Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.

PR:		92497
Submitted by:	/me
Repocopied by:	marcus

23 files changed, 17 insertions, 114 deletions

diff --git a/MOVED b/MOVED
index a329dd6cf4bd..5cc1201828d4 100644
--- a/MOVED
+++ b/MOVED
@@ -2156,3 +2156,4 @@ net/xnap|net-p2p/xnap|2006-01-30|Moved to new category
 misc/ed2k|net-p2p/ed2k|2006-01-30|Moved to new category
 misc/edonkey-tool-hash|net-p2p/edonkey-tool-hash|2006-01-30|Moved to new category
 misc/linux-edonkey-tool-recovermet|net-p2p/linux-edonkey-tool-recovermet|2006-01-30|Moved to new category
+math/netcdf|science/netcdf|2006-01-30|Moved to a better category
diff --git a/graphics/gmt/Makefile b/graphics/gmt/Makefile
index 683f27874a50..05ae4918e1bd 100644
--- a/graphics/gmt/Makefile
+++ b/graphics/gmt/Makefile
@@ -23,7 +23,7 @@ EXTRACT_ONLY=	${DISTNAME}_progs${EXTRACT_SUFX} \
 MAINTAINER=	sec@42.org
 COMMENT=	The Generic Mapping Tools data processing and display software package
 
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 
 EXTRACT_SUB=	GMT_share${EXTRACT_SUFX}
 
diff --git a/graphics/grads/Makefile b/graphics/grads/Makefile
index cceee35a9718..dd4d559d7d48 100644
--- a/graphics/grads/Makefile
+++ b/graphics/grads/Makefile
@@ -45,7 +45,7 @@ PLIST_SUB+=		NETCDF="@comment " HDF=""
 .endif
 
 .if defined(WITH_NETCDF)
-LIB_DEPENDS+=		netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS+=		netcdf.1:${PORTSDIR}/science/netcdf
 CONFIGURE_ARGS+=	--with-nc
 PLIST_SUB+=		NETCDF="" HDF="@comment "
 .endif
diff --git a/graphics/opendx/Makefile b/graphics/opendx/Makefile
index a2d35f24df79..8a5f3979f529 100644
--- a/graphics/opendx/Makefile
+++ b/graphics/opendx/Makefile
@@ -45,7 +45,7 @@ CONFIGURE_ARGS+=	--without-hdf
 .endif
 
 .if defined(WITH_NETCDF)
-LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/science/netcdf
 .else
 CONFIGURE_ARGS+=	--without-netcdf
 .endif
diff --git a/math/Makefile b/math/Makefile
index 087a7daaa2aa..2ae87541bfca 100644
--- a/math/Makefile
+++ b/math/Makefile
@@ -133,7 +133,6 @@
     SUBDIR += naturalmath
     SUBDIR += nauty
     SUBDIR += ndiff
-    SUBDIR += netcdf
     SUBDIR += newmat
     SUBDIR += ngraph
     SUBDIR += nsc2ke
diff --git a/math/grace/Makefile b/math/grace/Makefile
index c216f88c8a0f..2a8388d00cf6 100644
--- a/math/grace/Makefile
+++ b/math/grace/Makefile
@@ -20,7 +20,7 @@ MAINTAINER=	ports@FreeBSD.org
 COMMENT=	A powerful plotting tool (successor of xmgr)
 
 LIB_DEPENDS=	Xbae:${PORTSDIR}/x11-toolkits/xbae 	\
-		netcdf.1:${PORTSDIR}/math/netcdf	\
+		netcdf.1:${PORTSDIR}/science/netcdf	\
 		fftw.2:${PORTSDIR}/math/fftw		\
 		tiff.4:${PORTSDIR}/graphics/tiff	\
 		jpeg.9:${PORTSDIR}/graphics/jpeg	\
diff --git a/math/gri/Makefile b/math/gri/Makefile
index 869091c275b8..16ff8ce10d50 100644
--- a/math/gri/Makefile
+++ b/math/gri/Makefile
@@ -15,7 +15,7 @@ DISTNAME=	gri-${PORTVERSION}-arch-indep
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	An extensible plotting language for producing scientific graphs
 
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 BUILD_DEPENDS=	gawk:${PORTSDIR}/lang/gawk
 
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
diff --git a/math/labplot/Makefile b/math/labplot/Makefile
index 8a76823c3fc9..ccbd6188c0c0 100644
--- a/math/labplot/Makefile
+++ b/math/labplot/Makefile
@@ -21,7 +21,7 @@ LIB_DEPENDS=	tiff.4:${PORTSDIR}/graphics/tiff \
 		gsl.7:${PORTSDIR}/math/gsl \
 		jasper.4:${PORTSDIR}/graphics/jasper \
 		fftw3.3:${PORTSDIR}/math/fftw3 \
-		netcdf:${PORTSDIR}/math/netcdf \
+		netcdf:${PORTSDIR}/science/netcdf \
 		qwtplot3d.0:${PORTSDIR}/math/qwtplot3d
 RUN_DEPENDS=	pstoedit:${PORTSDIR}/graphics/pstoedit
 
diff --git a/math/netcdf/Makefile b/math/netcdf/Makefile
deleted file mode 100644
index b907ef08a76a..000000000000
--- a/math/netcdf/Makefile
+++ /dev/null
@@ -1,50 +0,0 @@
-# New ports collection makefile for:	netcdf
-# Date created:		29 July 1999
-# Whom:			Thomas Gellekum <tg@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	netcdf
-PORTVERSION=	3.6.0p1
-CATEGORIES=	math
-MASTER_SITES=	ftp://ftp.unidata.ucar.edu/pub/netcdf/%SUBDIR%/
-MASTER_SITE_SUBDIR=	. old
-DISTNAME=	${PORTNAME}-${PORTVERSION:S/p/-p/}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Library for machine-independent, array-oriented data access
-
-WRKSRC=		${WRKDIR}/${DISTNAME}/src
-
-CONFLICTS=	hdf-4.*
-
-GNU_CONFIGURE=	yes
-CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
-CONFIGURE_ENV=	CPPFLAGS="-fPIC -DPIC -Df2cFortran"
-INSTALLS_SHLIB=	yes
-
-MAN1=	ncdump.1 ncgen.1
-MAN3=	netcdf.3 netcdf.3f
-
-post-build:
-	@(cd ${WRKSRC}/libsrc && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-	@(cd ${WRKSRC}/cxx && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-
-post-install:
-	@${STRIP_CMD} ${PREFIX}/bin/ncdump
-	@${STRIP_CMD} ${PREFIX}/bin/ncgen
-	${INSTALL_DATA} ${WRKSRC}/libsrc/libnetcdf.so ${PREFIX}/lib/libnetcdf.so.1
-	${LN} -sf libnetcdf.so.1 ${PREFIX}/lib/libnetcdf.so
-	${INSTALL_DATA} ${WRKSRC}/cxx/libnetcdf_c++.so ${PREFIX}/lib/libnetcdf_c++.so.1
-	${LN} -sf libnetcdf_c++.so.1 ${PREFIX}/lib/libnetcdf_c++.so
-.if !defined(NOPORTDOCS)
-	@${MKDIR} ${DOCSDIR}
-.for file in COPYRIGHT README RELEASE_NOTES
-	${INSTALL_DATA} ${WRKSRC}/${file} ${DOCSDIR}
-.endfor
-.endif
-
-.include <bsd.port.mk>
diff --git a/math/netcdf/distinfo b/math/netcdf/distinfo
deleted file mode 100644
index c95930469808..000000000000
--- a/math/netcdf/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 (netcdf-3.6.0-p1.tar.gz) = 27c193e0462d9979406d167a01a5ee95
-SHA256 (netcdf-3.6.0-p1.tar.gz) = a9e6105ed89ce6cfd2edc78e8184232a2f950e674c5241c28cae361a1fe1adfe
-SIZE (netcdf-3.6.0-p1.tar.gz) = 842025
diff --git a/math/netcdf/files/patch-aa b/math/netcdf/files/patch-aa
deleted file mode 100644
index 4c9e564dc054..000000000000
--- a/math/netcdf/files/patch-aa
+++ /dev/null
@@ -1,19 +0,0 @@
---- rules.make.orig	Sat Dec 18 05:34:48 2004
-+++ rules.make	Thu Jan  6 15:12:59 2005
-@@ -145,14 +145,8 @@
- 	$(INSTALL) $(MANUAL) $@
- $(MANDIR)/man3/$(MANUAL):	$(MANDIR)/man3 $(MANUAL)
- 	$(INSTALL) $(MANUAL) $@
--$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
--$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f90
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
-+$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
-+$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
- 
- ################################################################################
- # Cleanup:
diff --git a/math/netcdf/pkg-descr b/math/netcdf/pkg-descr
deleted file mode 100644
index a8ab96607da6..000000000000
--- a/math/netcdf/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-NetCDF (network Common Data Form) is an interface for array-oriented
-data access and a library that provides an implementation of the
-interface. The netCDF library also defines a machine-independent
-format for representing scientific data. Together, the interface,
-library, and format support the creation, access, and sharing of
-scientific data. The netCDF software was developed at the Unidata
-Program Center in Boulder, Colorado.
-
-WWW: http://www.unidata.ucar.edu/packages/netcdf/
diff --git a/math/netcdf/pkg-plist b/math/netcdf/pkg-plist
deleted file mode 100644
index fcbebdf8999f..000000000000
--- a/math/netcdf/pkg-plist
+++ /dev/null
@@ -1,17 +0,0 @@
-bin/ncdump
-bin/ncgen
-include/ncvalues.h
-include/netcdf.h
-include/netcdf.hh
-include/netcdf.inc
-include/netcdfcpp.h
-lib/libnetcdf.a
-lib/libnetcdf.so
-lib/libnetcdf.so.1
-lib/libnetcdf_c++.a
-lib/libnetcdf_c++.so
-lib/libnetcdf_c++.so.1
-%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT
-%%PORTDOCS%%%%DOCSDIR%%/README
-%%PORTDOCS%%%%DOCSDIR%%/RELEASE_NOTES
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
diff --git a/math/p5-NetCDF/Makefile b/math/p5-NetCDF/Makefile
index 1ae34c84c067..2808208f18f0 100644
--- a/math/p5-NetCDF/Makefile
+++ b/math/p5-NetCDF/Makefile
@@ -16,7 +16,7 @@ EXTRACT_SUFX=	.tar.Z
 MAINTAINER=	rand@meridian-enviro.com
 COMMENT=	Perl5 module to read and write netCDF files
 
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 
 USE_PERL5=	yes
 
diff --git a/math/petsc/Makefile b/math/petsc/Makefile
index 657c04382861..f3cd78eb3030 100644
--- a/math/petsc/Makefile
+++ b/math/petsc/Makefile
@@ -143,7 +143,7 @@ CONFIGURE_ARGS+=	--with-parmetis=1					\
 #WITH_NETCDF=	yes
 #.endif
 #.if defined(WITH_NETCDF)
-#LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/math/netcdf
+#LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/science/netcdf
 #CONFIGURE_ENV+=	NETCDF_INCLUDE=${LOCALBASE}/include	\
 #		NETCDF_LIB=${LOCALBASE}/lib
 #.endif
diff --git a/math/py-scientific/Makefile b/math/py-scientific/Makefile
index 5b725ba2bb9b..073871997d4b 100644
--- a/math/py-scientific/Makefile
+++ b/math/py-scientific/Makefile
@@ -17,7 +17,7 @@ MAINTAINER=	tg@FreeBSD.org
 COMMENT=	Collection of Python modules for scientific computing
 
 BUILD_DEPENDS=	${PYNUMERIC}
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	${PYNUMERIC}
 
 USE_PYTHON=	yes
diff --git a/math/ruby-netcdf/Makefile b/math/ruby-netcdf/Makefile
index bdb7cd4a2ad1..542145c820d1 100644
--- a/math/ruby-netcdf/Makefile
+++ b/math/ruby-netcdf/Makefile
@@ -17,7 +17,7 @@ MAINTAINER=	ports@FreeBSD.org
 COMMENT=	A Ruby interface to the NetCDF scientific IO library
 
 BUILD_DEPENDS=	${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray
 
 USE_RUBY=	yes
diff --git a/science/Makefile b/science/Makefile
index 42fa754e24d8..8d5e172aecc7 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -48,6 +48,7 @@
     SUBDIR += mpb
     SUBDIR += mpqc
     SUBDIR += mpqc-mpich
+    SUBDIR += netcdf
     SUBDIR += oases
     SUBDIR += omnetpp
     SUBDIR += openbabel
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 8d710737ac7e..a0f74283cc3f 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -69,7 +69,7 @@ CONFIGURE_ARGS+=--with-hdf5=no
 .endif
 
 .if !defined(WITHOUT_NETCDF)
-LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/science/netcdf
 CONFIGURE_ARGS+=--with-netcdf=${LOCALBASE} --with-hdf=no
 .else
 CONFIGURE_ARGS+=--with-netcdf=no
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index b907ef08a76a..45c61fd487d6 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	3.6.0p1
-CATEGORIES=	math
+CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.unidata.ucar.edu/pub/netcdf/%SUBDIR%/
 MASTER_SITE_SUBDIR=	. old
 DISTNAME=	${PORTNAME}-${PORTVERSION:S/p/-p/}
diff --git a/science/netcdf4/Makefile b/science/netcdf4/Makefile
index b907ef08a76a..45c61fd487d6 100644
--- a/science/netcdf4/Makefile
+++ b/science/netcdf4/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	3.6.0p1
-CATEGORIES=	math
+CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.unidata.ucar.edu/pub/netcdf/%SUBDIR%/
 MASTER_SITE_SUBDIR=	. old
 DISTNAME=	${PORTNAME}-${PORTVERSION:S/p/-p/}
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
index bdb7cd4a2ad1..542145c820d1 100644
--- a/science/ruby-netcdf/Makefile
+++ b/science/ruby-netcdf/Makefile
@@ -17,7 +17,7 @@ MAINTAINER=	ports@FreeBSD.org
 COMMENT=	A Ruby interface to the NetCDF scientific IO library
 
 BUILD_DEPENDS=	${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
 RUN_DEPENDS=	${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray
 
 USE_RUBY=	yes
diff --git a/science/vis5d+/Makefile b/science/vis5d+/Makefile
index d75ab4516bb8..3b85ddfd75bc 100644
--- a/science/vis5d+/Makefile
+++ b/science/vis5d+/Makefile
@@ -18,7 +18,7 @@ COMMENT=	An OpenGL-based volumetric visualization program for scientific dataset
 
 BUILD_DEPENDS=	${LOCALBASE}/lib/libmix.a:${PORTSDIR}/graphics/qslim \
 		convert:${PORTSDIR}/graphics/ImageMagick
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf \
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf \
 		gtkgl.5:${PORTSDIR}/x11-toolkits/gtkglarea
 RUN_DEPENDS=	convert:${PORTSDIR}/graphics/ImageMagick