For EMBOSS:

	This patch brings EMBOSS up to date with the current version.

	i.   The patches included in files/ are bugfixes for files in
	     EMBOSS-3.0.0 that appeared after the release. They are
   	     documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

	     This is just 'for the record' so that we remember to remove these
	     patches in the next update.

	ii.  EMBOSS is now installed by default in LOCALBASE/emboss
	     This is to avoid CONFLICTS with other ports that install files
	     with the same names. Installing EMBOSS to another PREFIX is also
	     possible.

	iii. now EMBASSY and EMBOSS both store their distfiles in the same
	     DIST_SUBDIR

	iv.  use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
	     (manual) way

	For EMBASSY:

	This update brings embassy in sync with the update of EMBOSS to 3.0.0.

	Things that changed from previous version of the port:

	i.  embassy now installs by default in $LOCALBASE/emboss (the
	    new default PREFIX for emboss as well).

	ii. changed DIST_SUBDIR so that all the distfiles are put together with
	    emboss. This makes sense(TM)

	iii. incorporated new EMBASSY apps (this accounts for the changes in
	     OPTIONS and pkg-plist)

	iv.  removed obsoleted patches

	Finally, I included a sample text that could go in UPDATING.

PR:		93053
Submitted by:	Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)

1 files changed, 16 insertions, 0 deletions

diff --git a/UPDATING b/UPDATING
index 2361806e59bd..38fff2dd574c 100644
--- a/UPDATING
+++ b/UPDATING
@@ -6,6 +6,22 @@ You should get into the habit of checking this file for changes each
 time you update your ports collection, before attempting any port
 upgrades.
 
+20060331:
+  AFFECTS: users of biology/emboss and biology/embassy
+  AUTHOR: fernan@iib.unsam.edu.ar
+
+  Since EMBOSS-3.0.0 both EMBOSS and EMBASSY install by default into
+  $LOCALBASE/emboss to avoid conflicts with other ports.
+
+  Users upgrading to 3.0.0 should take this into consideration when
+  planning the upgrade, because it will involve moving data not
+  installed by the port (databases) and tweaking the emboss.defaults
+  config file.
+
+  If you want to install the ports into $LOCALBASE (/usr/local, the old
+  behaviour), you can still do so by setting PREFIX manually. But you
+  will have to take care of conflicting ports yourself.
+
 20060330:
   AFFECTS: users of x11/kdebase3
   AUTHOR: kde@freebsd.org