- Upgrade to version 1.70

- Update WWW

PR: 25772
Submitted by: maintainer

5 files changed, 41 insertions, 18 deletions

diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile
index ba2a39bd3152..1e9512a8b60c 100644
--- a/biology/p5-AcePerl/Makefile
+++ b/biology/p5-AcePerl/Makefile
@@ -6,28 +6,28 @@
 #
 
 PORTNAME=	AcePerl
-PORTVERSION=	1.67
+PORTVERSION=	1.70
 CATEGORIES=	biology databases perl5
-MASTER_SITES=	http://stein.cshl.org/AcePerl/archive/ \
-		${MASTER_SITE_PERL_CPAN}
+MASTER_SITES=	${MASTER_SITE_PERL_CPAN}
 MASTER_SITE_SUBDIR=Ace
 PKGNAMEPREFIX=	p5-
 
 MAINTAINER=	bio@freebsd.net
 
-PERL_CONFIGURE=	YES
-
-MAN3=		Ace::Sequence::Feature.3 \
-		Ace::Sequence.3 \
-		Ace.3 \
-		Ace::Sequence::FeatureList.3 \
-		Ace::Sequence::Multi.3 \
-		Ace::Sequence::Homol.3 \
-		Ace::Object.3 \
-		Ace::Local.3 \
-		Ace::Iterator.3 \
-		Ace::Model.3
+PERL_CONFIGURE=	yes
 
+MAN3=		Ace.3 Ace::Browser::AceSubs.3 Ace::Graphics::Fk.3 \
+		Ace::Graphics::Glyph.3 Ace::Graphics::Glyph::anchored_arrow.3 \
+		Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::group.3 \
+		Ace::Graphics::Glyph::line.3 Ace::Graphics::Glyph::primers.3 \
+		Ace::Graphics::Glyph::segments.3 \
+		Ace::Graphics::Glyph::transcript.3 \
+		Ace::Graphics::GlyphFactory.3 Ace::Graphics::Panel.3 \
+		Ace::Graphics::Track.3 Ace::Iterator.3 Ace::Local.3 \
+		Ace::Model.3 Ace::Object.3 Ace::Sequence.3 \
+		Ace::Sequence::Feature.3 Ace::Sequence::FeatureList.3 \
+		Ace::Sequence::GappedAlignment.3 Ace::Sequence::Homol.3 \
+		Ace::Sequence::Multi.3 Ace::Sequence::Transcript.3
 MANPREFIX=	${PREFIX}/lib/perl5/${PERL_VERSION}
 
 post-patch:
diff --git a/biology/p5-AcePerl/distinfo b/biology/p5-AcePerl/distinfo
index 9576df0586fd..1878c8c7ce91 100644
--- a/biology/p5-AcePerl/distinfo
+++ b/biology/p5-AcePerl/distinfo
@@ -1 +1 @@
-MD5 (AcePerl-1.67.tar.gz) = 46c9bc547f4c8e73480ddac7cbf79d95
+MD5 (AcePerl-1.70.tar.gz) = f2ab51ce6c4aa7abc0136abd55f486b6
diff --git a/biology/p5-AcePerl/pkg-comment b/biology/p5-AcePerl/pkg-comment
index ff9627c37254..a93e81fd7380 100644
--- a/biology/p5-AcePerl/pkg-comment
+++ b/biology/p5-AcePerl/pkg-comment
@@ -1 +1 @@
-Perl interface to the ACEDB genome database system
+Perl5 interface to the ACEDB genome database system
diff --git a/biology/p5-AcePerl/pkg-descr b/biology/p5-AcePerl/pkg-descr
index 766e14953e2a..ae6708977e75 100644
--- a/biology/p5-AcePerl/pkg-descr
+++ b/biology/p5-AcePerl/pkg-descr
@@ -3,7 +3,7 @@ system. It provides functionality for connecting to remote ACEDB databases,
 performing queries, fetching ACE objects, and updating databases.
 
 Author:	Lincoln D. Stein <lstein@cshl.org>
-WWW: http://stein.cshl.org/AcePerl/
+WWW:    http://stein.cshl.org/AcePerl/
 
 Port maintained by the FreeBSD bio-porters mailing list.
 
diff --git a/biology/p5-AcePerl/pkg-plist b/biology/p5-AcePerl/pkg-plist
index 52e905370a94..723b0fcbdec5 100644
--- a/biology/p5-AcePerl/pkg-plist
+++ b/biology/p5-AcePerl/pkg-plist
@@ -1,15 +1,34 @@
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/AceSubs.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SearchSubs.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SiteDefs.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/TreeSubs.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Freesubs.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Fk.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/anchored_arrow.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/arrow.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/group.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/line.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/primers.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/segments.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/transcript.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/GlyphFactory.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Panel.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Track.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Iterator.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Local.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Model.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object/Wormbase.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/RPC.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Feature.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/FeatureList.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/GappedAlignment.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Homol.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Multi.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence/Transcript.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/SocketServer.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/GFF/Filehandle.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/.packlist
@@ -83,4 +102,8 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/timestamps.al
 @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace
 @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/GFF
 @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Sequence
+@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Object
+@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph
+@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics
+@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser
 @dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace