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| author | Kurt Jaeger <pi@FreeBSD.org> | 2014-08-23 18:04:58 +0000 |
|---|---|---|
| committer | Kurt Jaeger <pi@FreeBSD.org> | 2014-08-23 18:04:58 +0000 |
| commit | 690da7ea383f1f7ba029563658b17f1a2544007b (patch) | |
| tree | 23e972a9950cc8d2fbf2c0128d929e3655a093ab /biology/phred | |
| parent | 652bbb78d901c4cafc5ebcb47f5de9e22c3bee34 (diff) | |
| download | ports-690da7ea383f1f7ba029563658b17f1a2544007b.tar.gz ports-690da7ea383f1f7ba029563658b17f1a2544007b.zip | |
update ports:
biology/phrab
biology/phred
biology/consed
Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.
PR: 191336
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
Notes
Notes:
svn path=/head/; revision=365765
Diffstat (limited to 'biology/phred')
| -rw-r--r-- | biology/phred/Makefile | 28 | ||||
| -rw-r--r-- | biology/phred/files/pkg-message.in | 6 |
2 files changed, 13 insertions, 21 deletions
diff --git a/biology/phred/Makefile b/biology/phred/Makefile index 61027fcfe259..06f673b57574 100644 --- a/biology/phred/Makefile +++ b/biology/phred/Makefile @@ -11,6 +11,8 @@ EXTRACT_SUFX= .tar.Z MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Base calling and quality value assignment on DNA sequencing +SUB_FILES= pkg-message + RESTRICTED= Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use. .if defined(PACKAGE_BUILDING) IGNORE= distribution files must be obtained via the authors @@ -20,21 +22,13 @@ NO_WRKSUBDIR= yes ALL_TARGET= phred daev -BINMODE= 0111 # avoid copying binaries as required by the agreement BINARIES= phred daev -.for f in ${BINARIES} -PLIST_FILES+= bin/${f} -.endfor DATADIR= ${PREFIX}/etc/PhredPar DATAFILES= phredpar.dat -.for f in ${DATAFILES} -PORTDATA+= ${f}.dist -.endfor PORTDOCS= NEWS PHRED.DOC DAEV.DOC -NO_STAGE= yes .include <bsd.port.pre.mk> .for f in ${DISTFILES} @@ -45,23 +39,15 @@ IGNORE= you must request the source code \(${f}\) via e-mail, place it manually do-install: .for f in ${BINARIES} - @${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/ + @${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/ .endfor - @${MKDIR} ${DATADIR} + @${MKDIR} ${STAGEDIR}${DATADIR} .for f in ${DATAFILES} - @${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}/${f}.dist + @${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DATADIR}/${f}.sample .endfor -.if ${PORT_OPTIONS:MDOCS} - @${MKDIR} ${DOCSDIR} + @${MKDIR} ${STAGEDIR}${DOCSDIR} .for f in ${PORTDOCS} - @${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR} + @${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DOCSDIR} .endfor -.endif - @${ECHO} "---------------------------------------------------------------------------" - @${ECHO} "You must set PHRED_PARAMETER_FILE environment variable." - @${ECHO} "" - @${ECHO} "The default parameter file in the distribution is located at:" - @${ECHO} " ${DATADIR}/phredpar.dat.dist" - @${ECHO} "---------------------------------------------------------------------------" .include <bsd.port.post.mk> diff --git a/biology/phred/files/pkg-message.in b/biology/phred/files/pkg-message.in new file mode 100644 index 000000000000..04ae9ab3ef43 --- /dev/null +++ b/biology/phred/files/pkg-message.in @@ -0,0 +1,6 @@ +----------------------------------------------------------------------------- +You must set PHRED_PARAMETER_FILE environment variable. + +The default parameter file in the distribution is located at: +%%DATADIR%%/phredpar.dat +----------------------------------------------------------------------------- |