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| author | Andrej Zverev <az@FreeBSD.org> | 2013-09-07 07:44:26 +0000 |
|---|---|---|
| committer | Andrej Zverev <az@FreeBSD.org> | 2013-09-07 07:44:26 +0000 |
| commit | 6f1287003076a66b3874202a0ccee07835658b3f (patch) | |
| tree | 631b2e0ea326a30b434e711980814ba3b010db90 /biology | |
| parent | 312fd92cc301fbf0529d852d31550be7b6e0c679 (diff) | |
| download | ports-6f1287003076a66b3874202a0ccee07835658b3f.tar.gz ports-6f1287003076a66b3874202a0ccee07835658b3f.zip | |
- convert to the new perl5 framework
Approved by: portmgr (bapt@, blanket)
Notes
Notes:
svn path=/head/; revision=326575
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/consed/Makefile | 2 | ||||
| -rw-r--r-- | biology/p5-Bio-ASN1-EntrezGene/Makefile | 3 | ||||
| -rw-r--r-- | biology/p5-bioperl-run/Makefile | 3 | ||||
| -rw-r--r-- | biology/velvet/Makefile | 3 |
4 files changed, 7 insertions, 4 deletions
diff --git a/biology/consed/Makefile b/biology/consed/Makefile index c5f067276030..9dc71cb3c238 100644 --- a/biology/consed/Makefile +++ b/biology/consed/Makefile @@ -19,7 +19,7 @@ RUN_DEPENDS= phred:${PORTSDIR}/biology/phred \ phrap:${PORTSDIR}/biology/phrap \ phd2fasta:${PORTSDIR}/biology/phd2fasta -USE_PERL5= yes +USES= perl5 USE_LINUX= yes USE_LINUX_APPS= xorglibs ONLY_FOR_ARCHS= i386 amd64 diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile index bd91a167633c..11a94ac25c46 100644 --- a/biology/p5-Bio-ASN1-EntrezGene/Makefile +++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile @@ -17,7 +17,8 @@ COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09 -PERL_CONFIGURE= yes +USES= perl5 +USE_PERL5= configure MAN3= Bio::ASN1::EntrezGene.3 \ Bio::ASN1::EntrezGene::Indexer.3 \ diff --git a/biology/p5-bioperl-run/Makefile b/biology/p5-bioperl-run/Makefile index b2becf786dbf..80a257afce72 100644 --- a/biology/p5-bioperl-run/Makefile +++ b/biology/p5-bioperl-run/Makefile @@ -24,7 +24,8 @@ RUN_DEPENDS:= ${BUILD_DEPENDS} CONFLICTS= p5-bioperl-run-1.[13579]* -PERL_MODBUILD= YES +USES= perl5 +USE_PERL5= modbuild WRKSRC= ${WRKDIR}/BioPerl-run-1.6.0 MAN1= bp_bioperl_application_installer.pl.1 \ diff --git a/biology/velvet/Makefile b/biology/velvet/Makefile index 6808c05340c1..de5eae20a9c6 100644 --- a/biology/velvet/Makefile +++ b/biology/velvet/Makefile @@ -22,7 +22,8 @@ MAXKMERLENGTH?= 31 VELVET_CATEGORIES?= 2 MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES} -USE_PERL5_RUN= yes +USES= perl5 +USE_PERL5= run BINARIES= velvetg velveth SCRIPTS= shuffleSequences_fasta.pl shuffleSequences_fastq.pl \ |