diff options
author | Kris Kennaway <kris@FreeBSD.org> | 2005-11-05 09:07:44 +0000 |
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committer | Kris Kennaway <kris@FreeBSD.org> | 2005-11-05 09:07:44 +0000 |
commit | b1cf59535c70b37f79dbb4a7374b9908cd760c4c (patch) | |
tree | de86c8c77ebfec33fb4888f702c1c1fc593cce83 /biology | |
parent | 46ce9b21a3308230eb3c7821516af7ccc044bb41 (diff) | |
download | ports-b1cf59535c70b37f79dbb4a7374b9908cd760c4c.tar.gz ports-b1cf59535c70b37f79dbb4a7374b9908cd760c4c.zip |
Remove expired ports
Notes
Notes:
svn path=/head/; revision=147349
Diffstat (limited to 'biology')
-rw-r--r-- | biology/Makefile | 1 | ||||
-rw-r--r-- | biology/nclever/Makefile | 35 | ||||
-rw-r--r-- | biology/nclever/distinfo | 2 | ||||
-rw-r--r-- | biology/nclever/files/patch-main | 11 | ||||
-rw-r--r-- | biology/nclever/files/patch-makefile | 47 | ||||
-rw-r--r-- | biology/nclever/pkg-descr | 8 | ||||
-rw-r--r-- | biology/nclever/pkg-plist | 6 |
7 files changed, 0 insertions, 110 deletions
diff --git a/biology/Makefile b/biology/Makefile index c81dd0446941..1af48c9dff8e 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -40,7 +40,6 @@ SUBDIR += mopac SUBDIR += nab SUBDIR += ncbi-toolkit - SUBDIR += nclever SUBDIR += ortep3 SUBDIR += p5-AcePerl SUBDIR += p5-Bio-ASN1-EntrezGene diff --git a/biology/nclever/Makefile b/biology/nclever/Makefile deleted file mode 100644 index 08a71e3f92d5..000000000000 --- a/biology/nclever/Makefile +++ /dev/null @@ -1,35 +0,0 @@ -# New ports collection makefile for: nclever -# Date created: 17 August 2001 -# Whom: Tony Maher -# -# $FreeBSD$ -# - -PORTNAME= nclever -PORTVERSION= 4.0 -CATEGORIES= biology -MASTER_SITES= ftp://megasun.bch.umontreal.ca/pub/nclever/ -DISTNAME= ${PORTNAME}${PORTVERSION} -EXTRACT_SUFX= .tar.Z - -MAINTAINER= tonym@biolateral.com.au -COMMENT= NClever is a character-based version of NCBI's Entrez program - -BUILD_DEPENDS= ${LOCALBASE}/lib/ncbi/libncbi.a:${PORTSDIR}/biology/ncbi-toolkit - -BROKEN= Unfetchable -DEPRECATED= "${BROKEN}" -EXPIRATION_DATE=2005-09-22 - -do-install: - @${MKDIR} ${PREFIX}/bin - @${INSTALL_PROGRAM} ${WRKSRC}/nclever ${PREFIX}/bin -.if !defined(NOPORTDOCS) - @${MKDIR} ${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/nclever_manual.txt ${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/nclever.citation ${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/sample_script1.txt ${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/sample_script2.txt ${DOCSDIR} -.endif - -.include <bsd.port.mk> diff --git a/biology/nclever/distinfo b/biology/nclever/distinfo deleted file mode 100644 index f251fe985118..000000000000 --- a/biology/nclever/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -MD5 (nclever4.0.tar.Z) = ef1c97fe8769b41e0fa8773848d70836 -SIZE (nclever4.0.tar.Z) = 80935 diff --git a/biology/nclever/files/patch-main b/biology/nclever/files/patch-main deleted file mode 100644 index 0014e55b9ef8..000000000000 --- a/biology/nclever/files/patch-main +++ /dev/null @@ -1,11 +0,0 @@ ---- main.c.orig Mon Sep 24 16:34:16 2001 -+++ main.c Mon Sep 24 16:37:26 2001 -@@ -358,7 +358,7 @@ - /* Read a line from stdin */ - static Boolean GetCommand(void) - { -- if (!gets(Command)) return(FALSE); -+ if (!fgets(Command,MAXLINELEN-1,stdin)) return(FALSE); - if (EchoCommands) fprintf(CmdStream,"%s\n",Command); - return(TRUE); - } diff --git a/biology/nclever/files/patch-makefile b/biology/nclever/files/patch-makefile deleted file mode 100644 index 1a97f20d9bd3..000000000000 --- a/biology/nclever/files/patch-makefile +++ /dev/null @@ -1,47 +0,0 @@ ---- Makefile.orig Thu Dec 7 11:11:31 2000 -+++ Makefile Thu Dec 7 11:34:11 2000 -@@ -29,7 +29,8 @@ - # NCBI librairies are needed. - - # Set the correct path to the NCBI package --NCBI = /usr/local/lib/NCBI -+NCBILIB = /usr/local/lib/ncbi -+NCBIINC = /usr/local/include/ncbi - - # Set the name of your ANSI C compiler - CC = gcc -@@ -39,7 +40,7 @@ - LIBSNCBI = -lncbiNacc -lnetentr -lncbicdr -lncbiobj -lnetcli -lncbi - # System linking libraries (these are used under Solaris 2.6; - # adjust according to your site). --LIBSSYS = -lm -lsocket -lnsl -lxnet -+LIBSSYS = -lm - - # - # Nothing to adjust below this line ! -@@ -50,20 +51,20 @@ - all: nclever - - nclever: $(OBJS) -- $(CC) $(CCFLAGS) -o nclever -L$(NCBI)/lib $(OBJS) $(LIBSNCBI) $(LIBSSYS) -+ $(CC) $(CCFLAGS) -o nclever -L$(NCBILIB) $(OBJS) $(LIBSNCBI) $(LIBSSYS) - strip nclever - - main.o: main.c main.h -- $(CC) $(CCFLAGS) -c -I$(NCBI)/include main.c -+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) main.c - - lists.o: lists.c main.h -- $(CC) $(CCFLAGS) -c -I$(NCBI)/include lists.c -+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) lists.c - - print.o: print.c main.h -- $(CC) $(CCFLAGS) -c -I$(NCBI)/include print.c -+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) print.c - - entinfo.o: entinfo.c main.h -- $(CC) $(CCFLAGS) -c -I$(NCBI)/include entinfo.c -+ $(CC) $(CCFLAGS) -c -I$(NCBIINC) entinfo.c - - clean: - rm *.o diff --git a/biology/nclever/pkg-descr b/biology/nclever/pkg-descr deleted file mode 100644 index 88fe809475c6..000000000000 --- a/biology/nclever/pkg-descr +++ /dev/null @@ -1,8 +0,0 @@ -NClever is a character-based version of NCBI's Entrez program. It is an -interactive tool that allows easy browsing of the Entrez database. - -More information available at: -WWW: ftp://megasun.bch.umontreal.ca/pub/nclever - --- -Tony Maher <tonym@biolateral.com.au> diff --git a/biology/nclever/pkg-plist b/biology/nclever/pkg-plist deleted file mode 100644 index 9b4616487e0a..000000000000 --- a/biology/nclever/pkg-plist +++ /dev/null @@ -1,6 +0,0 @@ -bin/nclever -%%PORTDOCS%%%%DOCSDIR%%/nclever.citation -%%PORTDOCS%%%%DOCSDIR%%/nclever_manual.txt -%%PORTDOCS%%%%DOCSDIR%%/sample_script1.txt -%%PORTDOCS%%%%DOCSDIR%%/sample_script2.txt -%%PORTDOCS%%@dirrm %%DOCSDIR%% |