diff options
| author | Sylvio Cesar Teixeira <sylvio@FreeBSD.org> | 2010-05-09 13:59:34 +0000 |
|---|---|---|
| committer | Sylvio Cesar Teixeira <sylvio@FreeBSD.org> | 2010-05-09 13:59:34 +0000 |
| commit | b5dabfb20dc5ba66969b8548e8657973fc54aac0 (patch) | |
| tree | bd682482b2188383162680689a3e0aac42d1fd43 /biology | |
| parent | bd5dc9a2830c64d7ce979f36d55069ab5b2852cd (diff) | |
| download | ports-b5dabfb20dc5ba66969b8548e8657973fc54aac0.tar.gz ports-b5dabfb20dc5ba66969b8548e8657973fc54aac0.zip | |
- Update to 3.1.4
PR: ports/146411
Submitted by: Glen Barber <glen.j.barber@gmail.com> (maintainer)
Notes
Notes:
svn path=/head/; revision=254018
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/migrate/Makefile | 2 | ||||
| -rw-r--r-- | biology/migrate/distinfo | 6 | ||||
| -rw-r--r-- | biology/migrate/files/patch-Makefile.in | 21 |
3 files changed, 18 insertions, 11 deletions
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile index a5f912eb1551..2b2c6f6e2753 100644 --- a/biology/migrate/Makefile +++ b/biology/migrate/Makefile @@ -6,7 +6,7 @@ # PORTNAME= migrate -PORTVERSION= 3.1.3 +PORTVERSION= 3.1.4 CATEGORIES= biology MASTER_SITES= http://people.sc.fsu.edu/~beerli/popgen/currentversion/ DISTNAME= ${PORTNAME}-${PORTVERSION}.src diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo index c2aaa89d30e8..672e54d04486 100644 --- a/biology/migrate/distinfo +++ b/biology/migrate/distinfo @@ -1,3 +1,3 @@ -MD5 (migrate-3.1.3.src.tar.gz) = 20b07feaeb3624769d6befec640a30e2 -SHA256 (migrate-3.1.3.src.tar.gz) = 176f516c8dec12b5370230e91dbc454b2ab6740656fdbb1a2475a5377fee630d -SIZE (migrate-3.1.3.src.tar.gz) = 2021127 +MD5 (migrate-3.1.4.src.tar.gz) = a1ffa3baa8a78b17b2dcb387de7801ee +SHA256 (migrate-3.1.4.src.tar.gz) = f09d35f544865f1cde3677b9b347b8a5de9e907f81d4f509e8f15c2fd28ea110 +SIZE (migrate-3.1.4.src.tar.gz) = 2227530 diff --git a/biology/migrate/files/patch-Makefile.in b/biology/migrate/files/patch-Makefile.in index 765eb15bc0bb..971ff5683425 100644 --- a/biology/migrate/files/patch-Makefile.in +++ b/biology/migrate/files/patch-Makefile.in @@ -1,16 +1,16 @@ ---- Makefile.in.orig 2008-12-06 03:19:25.000000000 +0900 -+++ Makefile.in 2008-12-09 15:17:10.000000000 +0900 -@@ -79,7 +79,7 @@ +--- Makefile.in.orig 2010-05-01 16:14:26.000000000 -0400 ++++ Makefile.in 2010-05-08 16:08:49.000000000 -0400 +@@ -80,7 +80,7 @@ # -DNEXUSTREE print nexus tree instead of plain newick trees # -UEP calculates unique event polymorphism - NEWSTUFF = -DNEWVERSION -DBFDEBUG + NEWSTUFF = -COMMONFLAGS = $(ARCH) $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) +COMMONFLAGS = $(MACOSVERSION) $(NEWSTUFF) -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP $(CFLAGS_MT) $(HARDWARECFLAGS) # # combine the common flags with the version number and subversion number COMMONVFLAGS = $(COMMONFLAGS) -DMIGRATESUBVERSION=\"\\\"$(MIGRATESUBVERSION)\\\"\" -@@ -195,22 +195,21 @@ - @echo ' make install (installs the executables and man page)' +@@ -202,22 +202,21 @@ + @echo ' make install (installs the executables and man page [out of date])' @echo ' [there are other targets for debugging purposes, check the Makefile]' -all:: haru @@ -36,7 +36,7 @@ mpis-thread:: haru $(MAKE) $(NAME) "CC=$(MPICC)" "CFLAGS = $(CFLAGS) $(PRETTYCFLAGS) $(THREADCFLAGS) -DMPI -DSLOWNET -DNEWREPLICANT -DMPIREPLICANT" "LIBS = $(OTHERLIBS) $(PDFLIB) $(LIBS)" -@@ -398,22 +397,22 @@ +@@ -405,22 +404,22 @@ else echo Must define $@; exit 1; fi $(NAME): $(PRODUCT_DEPENDS) @@ -64,3 +64,10 @@ #---------------------------------------------------------------- +@@ -473,4 +472,4 @@ + #---------------------------------------------------------------- + # BEAGLE + beagle: +- $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL" +\ No newline at end of file ++ $(MAKE) $(NAME) "CFLAGS = $(DEBUGCFLAGS) $(BEAGLEFLAGS) $(PRETTYCFLAGS)" "LIBS = $(PDFLIB) $(LIBS)" "LDFLAGS =$(LDFLAGS) $(EXCEPTIONS) `pkg-config /Users/beerli/src/beagle-lib/hmsbeagle-1.0.pc --cflags --libs` -framework OpenCL" |