update ports/biology/act to latest release (v2)

PR:		49093
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>

3 files changed, 1603 insertions, 988 deletions

diff --git a/biology/act/Makefile b/biology/act/Makefile
index d19ea54476f1..5146c497584c 100644
--- a/biology/act/Makefile
+++ b/biology/act/Makefile
@@ -1,15 +1,15 @@
 # New ports collection makefile for:	artemis
-# Date created:				11 Mar 2002
-# Whom:					chuynh@bilateral.com.au
+# Date created:		10 Mar 2003
+# Whom:			fernan@iib.unsam.edu.ar
 #
 # $FreeBSD$
 #
 
 PORTNAME=	act
-PORTVERSION=	1.0
+PORTVERSION=	2.0
 CATEGORIES=	biology
-MASTER_SITES=	http://www.sanger.ac.uk/Software/ACT/v1/
-DISTNAME=	act_compiled_v1
+MASTER_SITES=	http://www.sanger.ac.uk/Software/ACT/v2/
+DISTNAME=	act_compiled_v2
 
 MAINTAINER=	chuynh@biolateral.com.au
 COMMENT=	A DNA sequence comparison viewer based on Artemis
diff --git a/biology/act/distinfo b/biology/act/distinfo
index 48b31986c4a9..8095e70cb564 100644
--- a/biology/act/distinfo
+++ b/biology/act/distinfo
@@ -1 +1 @@
-MD5 (act_compiled_v1.tar.gz) = 30e263c6507007d866a24b59c0767d77
+MD5 (act_compiled_v2.tar.gz) = 7029fb9ac1beb63679a41cfea788e4f5
diff --git a/biology/act/pkg-plist b/biology/act/pkg-plist
index 46e5a821c9db..bfa40bc00500 100644
--- a/biology/act/pkg-plist
+++ b/biology/act/pkg-plist
@@ -1,983 +1,1598 @@
-act-1.0/CVS/Root
-act-1.0/CVS/Repository
-act-1.0/CVS/Entries
-act-1.0/.cvsignore
-act-1.0/AppGlobal.java
-act-1.0/Dad.java
-act-1.0/Makefile
-act-1.0/act
-act-1.0/META-INF/CVS/Root
-act-1.0/META-INF/CVS/Repository
-act-1.0/META-INF/CVS/Entries
-act-1.0/META-INF/MANIFEST.MF
-act-1.0/uk/CVS/Root
-act-1.0/uk/CVS/Repository
-act-1.0/uk/CVS/Entries
-act-1.0/uk/ac/CVS/Root
-act-1.0/uk/ac/CVS/Repository
-act-1.0/uk/ac/CVS/Entries
-act-1.0/uk/ac/sanger/CVS/Root
-act-1.0/uk/ac/sanger/CVS/Repository
-act-1.0/uk/ac/sanger/CVS/Entries
-act-1.0/uk/ac/sanger/pathogens/CVS/Root
-act-1.0/uk/ac/sanger/pathogens/CVS/Repository
-act-1.0/uk/ac/sanger/pathogens/CVS/Entries
-act-1.0/uk/ac/sanger/pathogens/Document.java
-act-1.0/uk/ac/sanger/pathogens/FastVector.java
-act-1.0/uk/ac/sanger/pathogens/FileDocument.java
-act-1.0/uk/ac/sanger/pathogens/FileProgressDocument.java
-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java
-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java
-act-1.0/uk/ac/sanger/pathogens/OutOfRangeException.java
-act-1.0/uk/ac/sanger/pathogens/ProgressInputStream.java
-act-1.0/uk/ac/sanger/pathogens/ReadOnlyException.java
-act-1.0/uk/ac/sanger/pathogens/StringVector.java
-act-1.0/uk/ac/sanger/pathogens/URLDocument.java
-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Root
-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Repository
-act-1.0/uk/ac/sanger/pathogens/embl/CVS/Entries
-act-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.java
-act-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.java
-act-1.0/uk/ac/sanger/pathogens/embl/Entry.java
-act-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.java
-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.java
-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java
-act-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/Feature.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java
-act-1.0/uk/ac/sanger/pathogens/embl/Key.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.java
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java
-act-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.java
-act-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java
-act-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java
-act-1.0/uk/ac/sanger/pathogens/embl/KeyVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/LineGroup.java
-act-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java
-act-1.0/uk/ac/sanger/pathogens/embl/Location.java
-act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.java
-act-1.0/uk/ac/sanger/pathogens/embl/Qualifier.java
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.java
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.java
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java
-act-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java
-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/PushBackException.java
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/Range.java
-act-1.0/uk/ac/sanger/pathogens/embl/RangeVector.java
-act-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java
-act-1.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/Sequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java
-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.java
-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java
-act-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java
-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.java
-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java
-act-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.java
-act-1.0/uk/ac/sanger/pathogens/embl/embl.example
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class
-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.class
-act-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class
-act-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class
-act-1.0/uk/ac/sanger/pathogens/embl/Key.class
-act-1.0/uk/ac/sanger/pathogens/embl/KeyVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/Qualifier.class
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/Entry.class
-act-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class
-act-1.0/uk/ac/sanger/pathogens/embl/LineGroup.class
-act-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.class
-act-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class
-act-1.0/uk/ac/sanger/pathogens/embl/PushBackException.class
-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class
-act-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/Sequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/Feature.class
-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class
-act-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.class
-act-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class
-act-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.class
-act-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class
-act-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class
-act-1.0/uk/ac/sanger/pathogens/embl/Range.class
-act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/RangeVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/Location.class
-act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.class
-act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.class
-act-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.class
-act-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class
-act-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class
-act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class
-act-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class
-act-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class
-act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class
-act-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.class
-act-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.class
-act-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class
-act-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class
-act-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class
-act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class
-act-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class
-act-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class
-act-1.0/uk/ac/sanger/pathogens/OutOfRangeException.class
-act-1.0/uk/ac/sanger/pathogens/StringVector.class
-act-1.0/uk/ac/sanger/pathogens/StringVector$1.class
-act-1.0/uk/ac/sanger/pathogens/ReadOnlyException.class
-act-1.0/uk/ac/sanger/pathogens/Document.class
-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class
-act-1.0/uk/ac/sanger/pathogens/FileDocument.class
-act-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class
-act-1.0/uk/ac/sanger/pathogens/FileProgressDocument.class
-act-1.0/uk/ac/sanger/pathogens/FastVector.class
-act-1.0/uk/ac/sanger/pathogens/ProgressInputStream.class
-act-1.0/diana/CVS/Root
-act-1.0/diana/CVS/Repository
-act-1.0/diana/CVS/Entries
-act-1.0/diana/AlignMatch.java
-act-1.0/diana/AlignMatchVector.java
-act-1.0/diana/ChangeEvent.java
-act-1.0/diana/ChangeListener.java
-act-1.0/diana/ClipBoard.java
-act-1.0/diana/ComparisonData.java
-act-1.0/diana/ComparisonDataFactory.java
-act-1.0/diana/ComparisonDataParseException.java
-act-1.0/diana/Entry.java
-act-1.0/diana/EntryChangeEvent.java
-act-1.0/diana/EntryChangeListener.java
-act-1.0/diana/EntryGroup.java
-act-1.0/diana/EntryGroupChangeEvent.java
-act-1.0/diana/EntryGroupChangeListener.java
-act-1.0/diana/EntrySource.java
-act-1.0/diana/plot/CVS/Root
-act-1.0/diana/plot/CVS/Repository
-act-1.0/diana/plot/CVS/Entries
-act-1.0/diana/plot/AGWindowAlgorithm.java
-act-1.0/diana/plot/ATDeviationAlgorithm.java
-act-1.0/diana/plot/Algorithm.java
-act-1.0/diana/plot/BaseAlgorithm.java
-act-1.0/diana/plot/Codon12CorrelationAlgorithm.java
-act-1.0/diana/plot/CodonUsageAlgorithm.java
-act-1.0/diana/plot/CodonUsageFormatException.java
-act-1.0/diana/plot/CodonUsageWeight.java
-act-1.0/diana/plot/CodonWeight.java
-act-1.0/diana/plot/CoilFeatureAlgorithm.java
-act-1.0/diana/plot/HydroAlgorithm.java
-act-1.0/diana/plot/FeatureAlgorithm.java
-act-1.0/diana/plot/GCDeviationAlgorithm.java
-act-1.0/diana/plot/GCFrameAlgorithm.java
-act-1.0/diana/plot/GCSDWindowAlgorithm.java
-act-1.0/diana/plot/GCWindowAlgorithm.java
-act-1.0/diana/plot/HydrophilicityAlgorithm.java
-act-1.0/diana/plot/HydrophobicityAlgorithm.java
-act-1.0/diana/plot/UserDataAlgorithm.java
-act-1.0/diana/plot/BaseAlgorithm.class
-act-1.0/diana/plot/Algorithm.class
-act-1.0/diana/plot/Codon12CorrelationAlgorithm.class
-act-1.0/diana/plot/GCWindowAlgorithm.class
-act-1.0/diana/plot/GCSDWindowAlgorithm.class
-act-1.0/diana/plot/AGWindowAlgorithm.class
-act-1.0/diana/plot/GCFrameAlgorithm.class
-act-1.0/diana/plot/GCDeviationAlgorithm.class
-act-1.0/diana/plot/ATDeviationAlgorithm.class
-act-1.0/diana/plot/UserDataAlgorithm.class
-act-1.0/diana/plot/CodonUsageAlgorithm.class
-act-1.0/diana/plot/CodonUsageWeight.class
-act-1.0/diana/plot/CodonWeight.class
-act-1.0/diana/plot/FeatureAlgorithm.class
-act-1.0/diana/plot/HydrophobicityAlgorithm.class
-act-1.0/diana/plot/HydroAlgorithm.class
-act-1.0/diana/plot/HydrophilicityAlgorithm.class
-act-1.0/diana/plot/CoilFeatureAlgorithm.class
-act-1.0/diana/plot/CodonUsageFormatException.class
-act-1.0/diana/EntrySourceVector.java
-act-1.0/diana/EntryVector.java
-act-1.0/diana/ExternalApplication.java
-act-1.0/diana/ExternalProgram.java
-act-1.0/diana/ExternalProgramException.java
-act-1.0/diana/ExternalProgramVector.java
-act-1.0/diana/ExternalSearchProgram.java
-act-1.0/diana/Feature.java
-act-1.0/diana/FeatureChangeEvent.java
-act-1.0/diana/FeatureChangeListener.java
-act-1.0/diana/FeatureEnumeration.java
-act-1.0/diana/FeatureFromVectorPredicate.java
-act-1.0/diana/FeatureKeyPredicate.java
-act-1.0/diana/FeatureKeyQualifierPredicate.java
-act-1.0/diana/FeatureSegment.java
-act-1.0/diana/FeaturePredicate.java
-act-1.0/diana/FeatureSegmentVector.java
-act-1.0/diana/FeatureVector.java
-act-1.0/diana/FilteredEntryGroup.java
-act-1.0/diana/GotoEvent.java
-act-1.0/diana/GotoEventSource.java
-act-1.0/diana/GotoListener.java
-act-1.0/diana/LastSegmentException.java
-act-1.0/diana/Logger.java
-act-1.0/diana/MSPcrunchComparisonData.java
-act-1.0/diana/MUMmerComparisonData.java
-act-1.0/diana/Options.java
-act-1.0/diana/Selectable.java
-act-1.0/diana/Selection.java
-act-1.0/diana/SelectionChangeEvent.java
-act-1.0/diana/SelectionChangeListener.java
-act-1.0/diana/helix.gif
-act-1.0/diana/SimpleComparisonData.java
-act-1.0/diana/SimpleEntryGroup.java
-act-1.0/diana/SimpleGotoEventSource.java
-act-1.0/diana/sanger-centre.gif
-act-1.0/diana/components/CVS/Root
-act-1.0/diana/components/CVS/Repository
-act-1.0/diana/components/CVS/Entries
-act-1.0/diana/components/ActMain.java
-act-1.0/diana/components/AddMenu.java
-act-1.0/diana/components/AlignmentViewer.java
-act-1.0/diana/components/ArtemisMain.java
-act-1.0/diana/components/BasePlot.java
-act-1.0/diana/components/BasePlotGroup.java
-act-1.0/diana/components/CanvasPanel.java
-act-1.0/diana/components/Comparator.java
-act-1.0/diana/components/ComparatorDialog.java
-act-1.0/diana/components/CorbaEntrySource.java
-act-1.0/diana/components/DisplayAdjustmentEvent.java
-act-1.0/diana/components/DisplayAdjustmentListener.java
-act-1.0/diana/components/DisplayComponent.java
-act-1.0/diana/components/EMBLCorbaEntrySource.java
-act-1.0/diana/components/EditMenu.java
-act-1.0/diana/components/EnsemblEntrySource.java
-act-1.0/diana/components/EntryActionListener.java
-act-1.0/diana/components/EntryEdit.java
-act-1.0/diana/components/EntryEditVector.java
-act-1.0/diana/components/EntryFileDialog.java
-act-1.0/diana/components/EntryGroupDisplay.java
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+act-2.0/seqdb/BioSeqHolder.java
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+act-2.0/Ensembl/artemis/RequestedSequenceTooLong.java
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+act-2.0/Ensembl/artemis/RequestedSequenceTooLongHelper.java
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+act-2.0/Ensembl/artemis/DBPOATie.java
+act-2.0/Dad.class
+act-2.0/AppGlobal.class
 bin/act
-@dirrm act-1.0/CVS
-@dirrm act-1.0/META-INF/CVS
-@dirrm act-1.0/META-INF
-@dirrm act-1.0/uk/CVS
-@dirrm act-1.0/uk/ac/CVS
-@dirrm act-1.0/uk/ac/sanger/CVS
-@dirrm act-1.0/uk/ac/sanger/pathogens/CVS
-@dirrm act-1.0/uk/ac/sanger/pathogens/embl/CVS
-@dirrm act-1.0/uk/ac/sanger/pathogens/embl
-@dirrm act-1.0/uk/ac/sanger/pathogens
-@dirrm act-1.0/uk/ac/sanger
-@dirrm act-1.0/uk/ac
-@dirrm act-1.0/uk
-@dirrm act-1.0/diana/CVS
-@dirrm act-1.0/diana/plot/CVS
-@dirrm act-1.0/diana/plot
-@dirrm act-1.0/diana/components/CVS
-@dirrm act-1.0/diana/components
-@dirrm act-1.0/diana/sequence/CVS
-@dirrm act-1.0/diana/sequence
-@dirrm act-1.0/diana
-@dirrm act-1.0/etc/CVS
-@dirrm act-1.0/etc
-@dirrm act-1.0/collections/CVS
-@dirrm act-1.0/collections
-@dirrm act-1.0
+@dirrm act-2.0/CVS
+@dirrm act-2.0/META-INF/CVS
+@dirrm act-2.0/META-INF
+@dirrm act-2.0/diana/CVS
+@dirrm act-2.0/diana/plot/CVS
+@dirrm act-2.0/diana/plot
+@dirrm act-2.0/diana/components/CVS
+@dirrm act-2.0/diana/components
+@dirrm act-2.0/diana/sequence/CVS
+@dirrm act-2.0/diana/sequence
+@dirrm act-2.0/diana
+@dirrm act-2.0/corba/CVS
+@dirrm act-2.0/corba
+@dirrm act-2.0/etc/CVS
+@dirrm act-2.0/etc
+@dirrm act-2.0/uk/CVS
+@dirrm act-2.0/uk/ac/CVS
+@dirrm act-2.0/uk/ac/sanger/CVS
+@dirrm act-2.0/uk/ac/sanger/pathogens/CVS
+@dirrm act-2.0/uk/ac/sanger/pathogens/embl/CVS
+@dirrm act-2.0/uk/ac/sanger/pathogens/embl
+@dirrm act-2.0/uk/ac/sanger/pathogens
+@dirrm act-2.0/uk/ac/sanger
+@dirrm act-2.0/uk/ac
+@dirrm act-2.0/uk
+@dirrm act-2.0/lib/CVS
+@dirrm act-2.0/lib
+@dirrm act-2.0/collections/CVS
+@dirrm act-2.0/collections
+@dirrm act-2.0/type
+@dirrm act-2.0/nsdb/LocationPackage
+@dirrm act-2.0/nsdb/NucFeaturePackage
+@dirrm act-2.0/nsdb/EmblPackage
+@dirrm act-2.0/nsdb
+@dirrm act-2.0/seqdb
+@dirrm act-2.0/Ensembl/artemis
+@dirrm act-2.0/Ensembl
+@dirrm act-2.0