diff options
| author | Martin Wilke <miwi@FreeBSD.org> | 2009-06-15 21:07:11 +0000 |
|---|---|---|
| committer | Martin Wilke <miwi@FreeBSD.org> | 2009-06-15 21:07:11 +0000 |
| commit | 939d411f085212610d20fec9fe0b0be119f21341 (patch) | |
| tree | 9021c5843d8a45310db0154f0f754ccc3b69ae81 /math/R | |
| parent | d5d949bdb88b25d3dd9e2439a9591f21c454ddb2 (diff) | |
| download | ports-939d411f085212610d20fec9fe0b0be119f21341.tar.gz ports-939d411f085212610d20fec9fe0b0be119f21341.zip | |
- Update to 2.9.0
PR: 135251
Submitted by: bf <bf2006a@yahoo.com> (maintainer)
Notes
Notes:
svn path=/head/; revision=235921
Diffstat (limited to 'math/R')
| -rw-r--r-- | math/R/Makefile | 124 | ||||
| -rw-r--r-- | math/R/distinfo | 6 | ||||
| -rw-r--r-- | math/R/pkg-plist | 835 |
3 files changed, 796 insertions, 169 deletions
diff --git a/math/R/Makefile b/math/R/Makefile index 112a54641bd6..b7415637f0a6 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -7,8 +7,7 @@ # PORTNAME= R -PORTVERSION= 2.8.1 -PORTREVISION= 1 +PORTVERSION= 2.9.0 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ ftp://cran.r-project.org/pub/R/src/base/R-2/ \ @@ -32,17 +31,20 @@ MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ MAINTAINER= bf1783@gmail.com COMMENT= A language for statistical computing and graphics -OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \ - TCLTK "Use Tcl/Tk (for the tcltk package)" on \ - JPEG "Enable the jpeg() graphics device" on \ - PNG "Enable the png() graphics device" on \ - X11 "Enable the X11() graphics device" on \ - GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \ - PCRE_PORT "Use PCRE port instead of bundled source" on \ - DVI_MANUALS "Install DVI manuals (requires TeX)" off \ - PDF_MANUALS "Install PDF manuals (requires TeX)" off \ - INFO_MANUALS "Install GNU info manuals" on \ - LETTER_PAPER "Use US Letter paper" off +OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \ + GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \ + ICU "Improve collation in multibyte locales with ICU" on \ + JPEG "Enable the jpeg() graphics device" on \ + LETTER_PAPER "Use US Letter paper" off \ + NLS "Build with NLS support" on \ + PCRE_PORT "Use PCRE port instead of bundled source" on \ + PNG "Enable the png() graphics device" on \ + TCLTK "Use Tcl/Tk (for the tcltk package)" on \ + THREADS "Build a multithreaded R" on \ + X11 "Enable the X11() graphics device" on \ + DVI_MANUALS "Install DVI manuals (requires TeX)" off \ + INFO_MANUALS "Install GNU info manuals" on \ + PDF_MANUALS "Install PDF manuals (requires TeX)" off MAN1= R.1 Rscript.1 @@ -54,7 +56,6 @@ ALL_TARGET= all GNU_CONFIGURE= yes USE_ICONV= yes USE_PERL5= yes -USE_GETTEXT= yes CONFIGURE_ENV= INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" CONFIGURE_ARGS= --enable-R-shlib --with-system-bzlib --with-system-zlib \ @@ -62,14 +63,6 @@ CONFIGURE_ARGS= --enable-R-shlib --with-system-bzlib --with-system-zlib \ .include <bsd.port.pre.mk> -.ifndef WITHOUT_NLS -USE_GETTEXT= yes -PLIST_SUB+= NLS="" -.else -CONFIGURE_ARGS+=--disable-nls -PLIST_SUB+= NLS="@comment " -.endif - .if defined(WITH_ATLAS) LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas CONFIGURE_ARGS+=--with-blas="-lf77blas -latlas" @@ -83,14 +76,15 @@ LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas \ CONFIGURE_ARGS+=--with-blas="-lblas" --with-lapack="-llapack -lblas" .endif -.if defined(WITHOUT_TCLTK) -CONFIGURE_ARGS+=--without-tcltk -PLIST_SUB+= TCLTK="@comment " +.if !defined(WITHOUT_GHOSTSCRIPT) +USE_GHOSTSCRIPT_RUN=yes +.endif + +.if defined(WITHOUT_ICU) +CONFIGURE_ARGS+=--without-ICU .else -LIB_DEPENDS+= tcl85:${PORTSDIR}/lang/tcl85 \ - tk85:${PORTSDIR}/x11-toolkits/tk85 -CONFIGURE_ARGS+=--with-tcltk -PLIST_SUB+= TCLTK="" +LIB_DEPENDS+= icui18n:${PORTSDIR}/devel/icu +CONFIGURE_ARGS+=--with-ICU .endif .if defined(WITHOUT_JPEG) @@ -100,6 +94,25 @@ LIB_DEPENDS+= jpeg.9:${PORTSDIR}/graphics/jpeg CONFIGURE_ARGS+=--with-jpeglib .endif +.if defined(WITH_LETTER_PAPER) +CONFIGURE_ENV+= R_PAPERSIZE=letter +.endif + +.if !defined(WITHOUT_NLS) +USE_GETTEXT= yes +PLIST_SUB+= NLS="" +.else +CONFIGURE_ARGS+=--disable-nls +PLIST_SUB+= NLS="@comment " +.endif + +.if defined(WITHOUT_PCRE_PORT) +CONFIGURE_ARGS+=--without-system-pcre +.else +LIB_DEPENDS+= pcre.0:${PORTSDIR}/devel/pcre +CONFIGURE_ARGS+=--with-system-pcre +.endif + .if defined(WITHOUT_PNG) CONFIGURE_ARGS+=--without-libpng .else @@ -107,6 +120,22 @@ LIB_DEPENDS+= png.5:${PORTSDIR}/graphics/png CONFIGURE_ARGS+=--with-libpng .endif +.if defined(WITHOUT_TCLTK) +CONFIGURE_ARGS+=--without-tcltk +PLIST_SUB+= TCLTK="@comment " +.else +USE_TK = 83+ +.include "${PORTSDIR}/Mk/bsd.tcl.mk" +CONFIGURE_ARGS+=--with-tcltk +PLIST_SUB+= TCLTK="" +.endif + +.if defined(WITHOUT_THREADS) +CONFIGURE_ARGS+=--disable-threads +.else +CONFIGURE_ARGS+=--enable-threads=posix +.endif + .if defined(WITHOUT_X11) CONFIGURE_ARGS+=--without-x PLIST_SUB+= X11="@comment " @@ -116,17 +145,6 @@ USE_XORG= x11 xt PLIST_SUB+= X11="" .endif -.if !defined(WITHOUT_GHOSTSCRIPT) -USE_GHOSTSCRIPT_RUN=yes -.endif - -.if defined(WITHOUT_PCRE_PORT) -CONFIGURE_ARGS+=--without-system-pcre -.else -LIB_DEPENDS+= pcre.0:${PORTSDIR}/devel/pcre -CONFIGURE_ARGS+=--with-system-pcre -.endif - .if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS) BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base ALL_TARGET+= dvi @@ -136,28 +154,32 @@ PLIST_SUB+= DVI_MANUAL="" PLIST_SUB+= DVI_MANUAL="@comment " .endif -.if defined(WITHOUT_PDF_MANUALS) && !defined(NOPORTDOCS) -PLIST_SUB+= PDF_MANUAL="@comment " -.else -PLIST_SUB+= PDF_MANUAL="" -BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base -ALL_TARGET+= pdf -INSTALL_TARGET+= install-pdf -.endif - .if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS) ALL_TARGET+= info INFO= R-FAQ R-admin R-data R-exts R-intro R-lang .endif -.if defined(WITH_LETTER_PAPER) -CONFIGURE_ENV+= R_PAPERSIZE=letter +.if defined(WITH_PDF_MANUALS) && !defined(NOPORTDOCS) +PLIST_SUB+= PDF_MANUAL="" +BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base +ALL_TARGET+= pdf +INSTALL_TARGET+= install-pdf +.else +PLIST_SUB+= PDF_MANUAL="@comment " .endif post-patch: @${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \ ${WRKSRC}/src/nmath/standalone/Makefile.in \ ${WRKSRC}/src/unix/Makefile.in + @${REINPLACE_CMD} -e "s|-lpthread|${PTHREAD_LIBS}|g" ${WRKSRC}/configure +.if defined(WITHOUT_NLS) + (cd ${WRKSRC}/src/library/Recommended; \ + for tarfile in *.tgz *.tar.gz ; do \ + ${TAR} -czf temptgz --exclude='*/po/*' @$$tarfile ; \ + ${MV} temptgz $$tarfile ; \ + done) +.endif regression-test: build @(cd ${WRKSRC}; ${MAKE} check) diff --git a/math/R/distinfo b/math/R/distinfo index a44d1aba164f..877bd984283b 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1,3 +1,3 @@ -MD5 (R-2.8.1.tar.gz) = acd40621b8942a2464daa2f9cef3273d -SHA256 (R-2.8.1.tar.gz) = ab488af73ce7a4f2057afcf0e725be96c9ae37f8721143004397b91928ecfa60 -SIZE (R-2.8.1.tar.gz) = 16585380 +MD5 (R-2.9.0.tar.gz) = a5b79a2bc1372136cda4674b5f46d146 +SHA256 (R-2.9.0.tar.gz) = f2de4b710feabf0395ee3503befc69332b78ed6b159e959e93bc086a1a8ad818 +SIZE (R-2.9.0.tar.gz) = 18423754 diff --git a/math/R/pkg-plist b/math/R/pkg-plist index 6467d4cdf34d..cf935dfa8893 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -29,6 +29,7 @@ lib/R/bin/javareconf lib/R/bin/libtool lib/R/bin/mkinstalldirs lib/R/bin/pager +lib/R/bin/rtags lib/R/etc/Makeconf lib/R/etc/Renviron lib/R/etc/ldpaths @@ -710,6 +711,443 @@ lib/R/library/MASS/scripts/ch13.R lib/R/library/MASS/scripts/ch14.R lib/R/library/MASS/scripts/ch15.R lib/R/library/MASS/scripts/ch16.R +lib/R/library/Matrix/CONTENTS +lib/R/library/Matrix/Copyrights +lib/R/library/Matrix/DESCRIPTION +lib/R/library/Matrix/Doxyfile +lib/R/library/Matrix/INDEX +lib/R/library/Matrix/Meta/Rd.rds +lib/R/library/Matrix/Meta/data.rds +lib/R/library/Matrix/Meta/hsearch.rds +lib/R/library/Matrix/Meta/nsInfo.rds +lib/R/library/Matrix/Meta/package.rds +lib/R/library/Matrix/Meta/vignette.rds +lib/R/library/Matrix/NAMESPACE +lib/R/library/Matrix/R-ex/BunchKaufman-methods.R +lib/R/library/Matrix/R-ex/CAex.R +lib/R/library/Matrix/R-ex/CHMfactor-class.R +lib/R/library/Matrix/R-ex/Cholesky-class.R +lib/R/library/Matrix/R-ex/Cholesky.R +lib/R/library/Matrix/R-ex/CsparseMatrix-class.R +lib/R/library/Matrix/R-ex/Diagonal.R +lib/R/library/Matrix/R-ex/Hilbert.R +lib/R/library/Matrix/R-ex/KNex.R +lib/R/library/Matrix/R-ex/LU-class.R +lib/R/library/Matrix/R-ex/Matrix-class.R +lib/R/library/Matrix/R-ex/Matrix.R +lib/R/library/Matrix/R-ex/MatrixFactorization-class.R +lib/R/library/Matrix/R-ex/RsparseMatrix-class.R +lib/R/library/Matrix/R-ex/Schur-class.R +lib/R/library/Matrix/R-ex/Schur.R +lib/R/library/Matrix/R-ex/Subassign-methods.R +lib/R/library/Matrix/R-ex/TsparseMatrix-class.R +lib/R/library/Matrix/R-ex/USCounties.R +lib/R/library/Matrix/R-ex/Xtrct-methods.R +lib/R/library/Matrix/R-ex/all-methods.R +lib/R/library/Matrix/R-ex/all.equal-methods.R +lib/R/library/Matrix/R-ex/atomicVector-class.R +lib/R/library/Matrix/R-ex/band.R +lib/R/library/Matrix/R-ex/bandSparse.R +lib/R/library/Matrix/R-ex/bdiag.R +lib/R/library/Matrix/R-ex/cBind.R +lib/R/library/Matrix/R-ex/chol.R +lib/R/library/Matrix/R-ex/colSums.R +lib/R/library/Matrix/R-ex/dMatrix-class.R +lib/R/library/Matrix/R-ex/ddenseMatrix-class.R +lib/R/library/Matrix/R-ex/ddiMatrix-class.R +lib/R/library/Matrix/R-ex/denseMatrix-class.R +lib/R/library/Matrix/R-ex/dgCMatrix-class.R +lib/R/library/Matrix/R-ex/dgTMatrix-class.R +lib/R/library/Matrix/R-ex/diagonalMatrix-class.R +lib/R/library/Matrix/R-ex/dpoMatrix-class.R +lib/R/library/Matrix/R-ex/drop0.R +lib/R/library/Matrix/R-ex/dsCMatrix-class.R +lib/R/library/Matrix/R-ex/dsRMatrix-class.R 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lib/R/library/grid/R-ex/grid.show.layout.R lib/R/library/grid/R-ex/grid.show.viewport.R lib/R/library/grid/R-ex/grid.text.R @@ -4106,6 +4563,7 @@ lib/R/library/grid/help/grid.record lib/R/library/grid/help/grid.rect lib/R/library/grid/help/grid.refresh lib/R/library/grid/help/grid.remove +lib/R/library/grid/help/grid.roundrect lib/R/library/grid/help/grid.segments lib/R/library/grid/help/grid.set lib/R/library/grid/help/grid.show.layout @@ -4126,6 +4584,7 @@ lib/R/library/grid/help/unit.c lib/R/library/grid/help/unit.length lib/R/library/grid/help/unit.pmin lib/R/library/grid/help/unit.rep +lib/R/library/grid/help/valid.just lib/R/library/grid/help/validDetails lib/R/library/grid/help/viewport lib/R/library/grid/help/viewports @@ -4181,6 +4640,7 @@ lib/R/library/grid/html/grid.record.html lib/R/library/grid/html/grid.rect.html lib/R/library/grid/html/grid.refresh.html lib/R/library/grid/html/grid.remove.html +lib/R/library/grid/html/grid.roundrect.html lib/R/library/grid/html/grid.segments.html lib/R/library/grid/html/grid.set.html lib/R/library/grid/html/grid.show.layout.html @@ -4201,6 +4661,7 @@ lib/R/library/grid/html/unit.html lib/R/library/grid/html/unit.length.html lib/R/library/grid/html/unit.pmin.html lib/R/library/grid/html/unit.rep.html +lib/R/library/grid/html/valid.just.html lib/R/library/grid/html/validDetails.html lib/R/library/grid/html/viewport.html lib/R/library/grid/html/viewports.html @@ -4255,6 +4716,7 @@ lib/R/library/grid/latex/grid.record.tex lib/R/library/grid/latex/grid.rect.tex lib/R/library/grid/latex/grid.refresh.tex lib/R/library/grid/latex/grid.remove.tex +lib/R/library/grid/latex/grid.roundrect.tex lib/R/library/grid/latex/grid.segments.tex lib/R/library/grid/latex/grid.set.tex lib/R/library/grid/latex/grid.show.layout.tex @@ -4275,6 +4737,7 @@ lib/R/library/grid/latex/unit.length.tex lib/R/library/grid/latex/unit.pmin.tex lib/R/library/grid/latex/unit.rep.tex lib/R/library/grid/latex/unit.tex +lib/R/library/grid/latex/valid.just.tex lib/R/library/grid/latex/validDetails.tex lib/R/library/grid/latex/viewport.tex lib/R/library/grid/latex/viewports.tex @@ -4327,6 +4790,7 @@ lib/R/library/lattice/R-ex/make.groups.R lib/R/library/lattice/R-ex/melanoma.R lib/R/library/lattice/R-ex/packet.panel.default.R lib/R/library/lattice/R-ex/panel.bwplot.R +lib/R/library/lattice/R-ex/panel.smoothScatter.R lib/R/library/lattice/R-ex/panel.violin.R lib/R/library/lattice/R-ex/panel.xyplot.R lib/R/library/lattice/R-ex/print.trellis.R @@ -4390,6 +4854,7 @@ lib/R/library/lattice/help/panel.pairs lib/R/library/lattice/help/panel.parallel lib/R/library/lattice/help/panel.qqmath lib/R/library/lattice/help/panel.qqmathline +lib/R/library/lattice/help/panel.smoothScatter lib/R/library/lattice/help/panel.stripplot lib/R/library/lattice/help/panel.superpose lib/R/library/lattice/help/panel.violin @@ -4451,6 +4916,7 @@ lib/R/library/lattice/html/panel.pairs.html 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lib/R/library/methods/R-ex/RClassUtils.R lib/R/library/methods/R-ex/RMethodUtils.R @@ -4555,6 +5023,7 @@ lib/R/library/methods/R-ex/as.R lib/R/library/methods/R-ex/callGeneric.R lib/R/library/methods/R-ex/canCoerce.R lib/R/library/methods/R-ex/cbind2.R +lib/R/library/methods/R-ex/classesToAM.R lib/R/library/methods/R-ex/dotsMethods.R lib/R/library/methods/R-ex/findMethods.R lib/R/library/methods/R-ex/getClass.R @@ -4566,8 +5035,10 @@ lib/R/library/methods/R-ex/is.R lib/R/library/methods/R-ex/isSealedMethod.R lib/R/library/methods/R-ex/method.skeleton.R lib/R/library/methods/R-ex/new.R +lib/R/library/methods/R-ex/nonStructure-class.R lib/R/library/methods/R-ex/promptClass.R lib/R/library/methods/R-ex/representation.R +lib/R/library/methods/R-ex/selectSuperClasses.R lib/R/library/methods/R-ex/setClass.R lib/R/library/methods/R-ex/setClassUnion.R lib/R/library/methods/R-ex/setGeneric.R @@ -4576,6 +5047,7 @@ lib/R/library/methods/R-ex/setOldClass.R lib/R/library/methods/R-ex/show.R lib/R/library/methods/R-ex/showMethods.R lib/R/library/methods/R-ex/slot.R +lib/R/library/methods/R-ex/testInheritedMethods.R lib/R/library/methods/R-ex/validObject.R lib/R/library/methods/R/methods lib/R/library/methods/R/methods.rdb @@ -4610,6 +5082,7 @@ lib/R/library/methods/help/callGeneric lib/R/library/methods/help/canCoerce lib/R/library/methods/help/cbind2 lib/R/library/methods/help/classRepresentation-class +lib/R/library/methods/help/classesToAM lib/R/library/methods/help/dotsMethods lib/R/library/methods/help/findClass lib/R/library/methods/help/findMethods @@ -4629,9 +5102,11 @@ lib/R/library/methods/help/methodUtilities lib/R/library/methods/help/methods-defunct lib/R/library/methods/help/methods-package lib/R/library/methods/help/new +lib/R/library/methods/help/nonStructure-class lib/R/library/methods/help/promptClass lib/R/library/methods/help/promptMethods lib/R/library/methods/help/representation +lib/R/library/methods/help/selectSuperClasses lib/R/library/methods/help/setClass lib/R/library/methods/help/setClassUnion lib/R/library/methods/help/setGeneric @@ -4643,6 +5118,7 @@ lib/R/library/methods/help/showMethods lib/R/library/methods/help/signature-class lib/R/library/methods/help/slot lib/R/library/methods/help/substituteDirect +lib/R/library/methods/help/testInheritedMethods lib/R/library/methods/help/validObject lib/R/library/methods/help/zBasicFunsList lib/R/library/methods/html/00Index.html @@ -4675,6 +5151,7 @@ lib/R/library/methods/html/callGeneric.html lib/R/library/methods/html/canCoerce.html lib/R/library/methods/html/cbind2.html lib/R/library/methods/html/classRepresentation-class.html +lib/R/library/methods/html/classesToAM.html lib/R/library/methods/html/dotsMethods.html lib/R/library/methods/html/findClass.html lib/R/library/methods/html/findMethods.html @@ -4694,9 +5171,11 @@ lib/R/library/methods/html/methodUtilities.html lib/R/library/methods/html/methods-defunct.html lib/R/library/methods/html/methods-package.html lib/R/library/methods/html/new.html +lib/R/library/methods/html/nonStructure-class.html lib/R/library/methods/html/promptClass.html lib/R/library/methods/html/promptMethods.html lib/R/library/methods/html/representation.html +lib/R/library/methods/html/selectSuperClasses.html lib/R/library/methods/html/setClass.html lib/R/library/methods/html/setClassUnion.html lib/R/library/methods/html/setGeneric.html @@ -4708,6 +5187,7 @@ lib/R/library/methods/html/showMethods.html lib/R/library/methods/html/signature-class.html lib/R/library/methods/html/slot.html lib/R/library/methods/html/substituteDirect.html +lib/R/library/methods/html/testInheritedMethods.html lib/R/library/methods/html/validObject.html lib/R/library/methods/html/zBasicFunsList.html lib/R/library/methods/latex/BasicClasses.tex @@ -4739,6 +5219,7 @@ lib/R/library/methods/latex/callGeneric.tex lib/R/library/methods/latex/canCoerce.tex lib/R/library/methods/latex/cbind2.tex lib/R/library/methods/latex/classRepresentation-class.tex +lib/R/library/methods/latex/classesToAM.tex lib/R/library/methods/latex/dotsMethods.tex lib/R/library/methods/latex/findClass.tex lib/R/library/methods/latex/findMethods.tex @@ -4758,9 +5239,11 @@ lib/R/library/methods/latex/methodUtilities.tex lib/R/library/methods/latex/methods-defunct.tex lib/R/library/methods/latex/methods-package.tex lib/R/library/methods/latex/new.tex +lib/R/library/methods/latex/nonStructure-class.tex lib/R/library/methods/latex/promptClass.tex lib/R/library/methods/latex/promptMethods.tex lib/R/library/methods/latex/representation.tex +lib/R/library/methods/latex/selectSuperClasses.tex lib/R/library/methods/latex/setClass.tex lib/R/library/methods/latex/setClassUnion.tex lib/R/library/methods/latex/setGeneric.tex @@ -4772,6 +5255,7 @@ lib/R/library/methods/latex/showMethods.tex lib/R/library/methods/latex/signature-class.tex lib/R/library/methods/latex/slot.tex lib/R/library/methods/latex/substituteDirect.tex +lib/R/library/methods/latex/testInheritedMethods.tex lib/R/library/methods/latex/validObject.tex lib/R/library/methods/latex/zBasicFunsList.tex lib/R/library/methods/libs/methods.so @@ -4801,6 +5285,11 @@ lib/R/library/mgcv/Meta/nsInfo.rds lib/R/library/mgcv/Meta/package.rds lib/R/library/mgcv/NAMESPACE lib/R/library/mgcv/R-ex/Predict.matrix.R +lib/R/library/mgcv/R-ex/Predict.matrix.cr.smooth.R +lib/R/library/mgcv/R-ex/Tweedie.R +lib/R/library/mgcv/R-ex/ldTweedie.R +lib/R/library/mgcv/R-ex/smooth.construct.tensor.smooth.spec.R +lib/R/library/mgcv/R-ex/sp.vcov.R lib/R/library/mgcv/R-ex/anova.gam.R lib/R/library/mgcv/R-ex/cSplineDes.R lib/R/library/mgcv/R-ex/choose.k.R @@ -4850,6 +5339,11 @@ lib/R/library/mgcv/R-ex/vis.gam.R lib/R/library/mgcv/R/mgcv lib/R/library/mgcv/R/mgcv.rdb lib/R/library/mgcv/R/mgcv.rdx +lib/R/library/mgcv/help/Predict.matrix.cr.smooth +lib/R/library/mgcv/help/Tweedie +lib/R/library/mgcv/help/ldTweedie +lib/R/library/mgcv/help/smooth.construct.tensor.smooth.spec +lib/R/library/mgcv/help/sp.vcov lib/R/library/mgcv/help/AnIndex lib/R/library/mgcv/help/Predict.matrix lib/R/library/mgcv/help/anova.gam @@ -4868,17 +5362,14 @@ lib/R/library/mgcv/help/gam.control lib/R/library/mgcv/help/gam.convergence lib/R/library/mgcv/help/gam.fit lib/R/library/mgcv/help/gam.fit3 -lib/R/library/mgcv/help/gam.method lib/R/library/mgcv/help/gam.models lib/R/library/mgcv/help/gam.outer lib/R/library/mgcv/help/gam.selection -lib/R/library/mgcv/help/gam.setup lib/R/library/mgcv/help/gam.side lib/R/library/mgcv/help/gam2objective lib/R/library/mgcv/help/gamObject lib/R/library/mgcv/help/gamSim lib/R/library/mgcv/help/gamm -lib/R/library/mgcv/help/gamm.setup lib/R/library/mgcv/help/get.var lib/R/library/mgcv/help/influence.gam lib/R/library/mgcv/help/initial.sp @@ -4921,6 +5412,11 @@ lib/R/library/mgcv/help/tensor.prod.model.matrix lib/R/library/mgcv/help/uniquecombs lib/R/library/mgcv/help/vcov.gam lib/R/library/mgcv/help/vis.gam +lib/R/library/mgcv/html/Predict.matrix.cr.smooth.html +lib/R/library/mgcv/html/Tweedie.html +lib/R/library/mgcv/html/ldTweedie.html +lib/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html +lib/R/library/mgcv/html/sp.vcov.html lib/R/library/mgcv/html/00Index.html lib/R/library/mgcv/html/Predict.matrix.html lib/R/library/mgcv/html/anova.gam.html @@ -4939,17 +5435,14 @@ lib/R/library/mgcv/html/gam.convergence.html lib/R/library/mgcv/html/gam.fit.html lib/R/library/mgcv/html/gam.fit3.html lib/R/library/mgcv/html/gam.html -lib/R/library/mgcv/html/gam.method.html lib/R/library/mgcv/html/gam.models.html lib/R/library/mgcv/html/gam.outer.html lib/R/library/mgcv/html/gam.selection.html -lib/R/library/mgcv/html/gam.setup.html lib/R/library/mgcv/html/gam.side.html lib/R/library/mgcv/html/gam2objective.html lib/R/library/mgcv/html/gamObject.html lib/R/library/mgcv/html/gamSim.html lib/R/library/mgcv/html/gamm.html -lib/R/library/mgcv/html/gamm.setup.html lib/R/library/mgcv/html/get.var.html lib/R/library/mgcv/html/influence.gam.html lib/R/library/mgcv/html/initial.sp.html @@ -4993,6 +5486,11 @@ lib/R/library/mgcv/html/uniquecombs.html lib/R/library/mgcv/html/vcov.gam.html lib/R/library/mgcv/html/vis.gam.html lib/R/library/mgcv/latex/Predict.matrix.tex +lib/R/library/mgcv/latex/Predict.matrix.cr.smooth.tex +lib/R/library/mgcv/latex/Tweedie.tex +lib/R/library/mgcv/latex/ldTweedie.tex +lib/R/library/mgcv/latex/smooth.construct.tensor.smooth.spec.tex +lib/R/library/mgcv/latex/sp.vcov.tex lib/R/library/mgcv/latex/anova.gam.tex lib/R/library/mgcv/latex/cSplineDes.tex lib/R/library/mgcv/latex/choose.k.tex @@ -5008,17 +5506,14 @@ lib/R/library/mgcv/latex/gam.control.tex lib/R/library/mgcv/latex/gam.convergence.tex lib/R/library/mgcv/latex/gam.fit.tex lib/R/library/mgcv/latex/gam.fit3.tex -lib/R/library/mgcv/latex/gam.method.tex lib/R/library/mgcv/latex/gam.models.tex lib/R/library/mgcv/latex/gam.outer.tex lib/R/library/mgcv/latex/gam.selection.tex -lib/R/library/mgcv/latex/gam.setup.tex lib/R/library/mgcv/latex/gam.side.tex lib/R/library/mgcv/latex/gam.tex lib/R/library/mgcv/latex/gam2objective.tex lib/R/library/mgcv/latex/gamObject.tex lib/R/library/mgcv/latex/gamSim.tex -lib/R/library/mgcv/latex/gamm.setup.tex lib/R/library/mgcv/latex/gamm.tex lib/R/library/mgcv/latex/get.var.tex lib/R/library/mgcv/latex/influence.gam.tex @@ -6220,6 +6715,7 @@ lib/R/library/nnet/latex/predict.nnet.tex lib/R/library/nnet/latex/which.is.max.tex lib/R/library/nnet/libs/nnet.so lib/R/library/nnet/man/nnet.Rd.gz + %%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo %%NLS%%lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo lib/R/library/rpart/CONTENTS @@ -6752,6 +7248,7 @@ lib/R/library/stats/R-ex/plot.ppr.R lib/R/library/stats/R-ex/plot.profile.nls.R lib/R/library/stats/R-ex/plot.stepfun.R lib/R/library/stats/R-ex/plot.ts.R +lib/R/library/stats/R-ex/poisson.test.R lib/R/library/stats/R-ex/poly.R lib/R/library/stats/R-ex/power.R lib/R/library/stats/R-ex/power.anova.test.R @@ -7047,6 +7544,7 @@ lib/R/library/stats/help/plot.profile.nls lib/R/library/stats/help/plot.spec lib/R/library/stats/help/plot.stepfun lib/R/library/stats/help/plot.ts +lib/R/library/stats/help/poisson.test lib/R/library/stats/help/poly lib/R/library/stats/help/power lib/R/library/stats/help/power.anova.test @@ -7352,6 +7850,7 @@ lib/R/library/stats/html/plot.profile.nls.html lib/R/library/stats/html/plot.spec.html lib/R/library/stats/html/plot.stepfun.html lib/R/library/stats/html/plot.ts.html +lib/R/library/stats/html/poisson.test.html lib/R/library/stats/html/poly.html lib/R/library/stats/html/power.anova.test.html lib/R/library/stats/html/power.html @@ -7656,6 +8155,7 @@ lib/R/library/stats/latex/plot.profile.nls.tex lib/R/library/stats/latex/plot.spec.tex lib/R/library/stats/latex/plot.stepfun.tex lib/R/library/stats/latex/plot.ts.tex +lib/R/library/stats/latex/poisson.test.tex lib/R/library/stats/latex/poly.tex lib/R/library/stats/latex/power.anova.test.tex lib/R/library/stats/latex/power.prop.test.tex @@ -7862,8 +8362,8 @@ lib/R/library/survival/Meta/nsInfo.rds lib/R/library/survival/Meta/package.rds lib/R/library/survival/NAMESPACE lib/R/library/survival/R-ex/Surv.R +lib/R/library/survival/R-ex/aareg.R lib/R/library/survival/R-ex/anova.coxph.R -lib/R/library/survival/R-ex/as.date.R lib/R/library/survival/R-ex/attrassign.R lib/R/library/survival/R-ex/cch.R lib/R/library/survival/R-ex/clogit.R @@ -7871,21 +8371,16 @@ lib/R/library/survival/R-ex/cluster.R lib/R/library/survival/R-ex/cox.zph.R lib/R/library/survival/R-ex/coxph.R lib/R/library/survival/R-ex/coxph.detail.R -lib/R/library/survival/R-ex/date.ddmmmyy.R -lib/R/library/survival/R-ex/date.mdy.R -lib/R/library/survival/R-ex/date.mmddyy.R -lib/R/library/survival/R-ex/date.mmddyyyy.R +lib/R/library/survival/R-ex/dsurvreg.R lib/R/library/survival/R-ex/frailty.R lib/R/library/survival/R-ex/is.ratetable.R lib/R/library/survival/R-ex/kidney.R lib/R/library/survival/R-ex/lines.survfit.R -lib/R/library/survival/R-ex/mdy.date.R lib/R/library/survival/R-ex/nwtco.R lib/R/library/survival/R-ex/plot.cox.zph.R lib/R/library/survival/R-ex/plot.survfit.R lib/R/library/survival/R-ex/predict.coxph.R lib/R/library/survival/R-ex/predict.survreg.R -lib/R/library/survival/R-ex/print.survfit.R lib/R/library/survival/R-ex/pspline.R lib/R/library/survival/R-ex/pyears.R lib/R/library/survival/R-ex/ratetable.R @@ -7893,16 +8388,20 @@ lib/R/library/survival/R-ex/residuals.coxph.R lib/R/library/survival/R-ex/residuals.survreg.R lib/R/library/survival/R-ex/ridge.R lib/R/library/survival/R-ex/strata.R +lib/R/library/survival/R-ex/summary.aareg.R +lib/R/library/survival/R-ex/summary.coxph.R lib/R/library/survival/R-ex/summary.survfit.R +lib/R/library/survival/R-ex/survConcordance.R lib/R/library/survival/R-ex/survSplit.R lib/R/library/survival/R-ex/survdiff.R lib/R/library/survival/R-ex/survexp.R lib/R/library/survival/R-ex/survexp.us.R lib/R/library/survival/R-ex/survfit.R +lib/R/library/survival/R-ex/survfit.coxph.R lib/R/library/survival/R-ex/survobrien.R lib/R/library/survival/R-ex/survreg.R lib/R/library/survival/R-ex/survreg.distributions.R -lib/R/library/survival/R-ex/survreg.old.R +lib/R/library/survival/R-ex/survregDtest.R lib/R/library/survival/R-ex/tcut.R lib/R/library/survival/R-ex/tobin.R lib/R/library/survival/R-ex/untangle.specials.R @@ -7912,40 +8411,61 @@ lib/R/library/survival/R/survival.rdx lib/R/library/survival/data/Rdata.rdb lib/R/library/survival/data/Rdata.rds lib/R/library/survival/data/Rdata.rdx +lib/R/library/survival/data/leukemia.dat +lib/R/library/survival/data/minn2000.dat +lib/R/library/survival/data/minn2004.dat +lib/R/library/survival/data/minndecennial.dat +lib/R/library/survival/data/minnpred.dat +lib/R/library/survival/data/pbcseq.dat +lib/R/library/survival/data/us1996.dat +lib/R/library/survival/data/us1997.dat +lib/R/library/survival/data/us1998.dat +lib/R/library/survival/data/us1999.dat +lib/R/library/survival/data/us2000.dat +lib/R/library/survival/data/us2001.dat +lib/R/library/survival/data/us2002.dat +lib/R/library/survival/data/us2003.dat +lib/R/library/survival/data/us2004.dat +lib/R/library/survival/data/usdecennial.dat +lib/R/library/survival/data/usinfant.dat lib/R/library/survival/help/AnIndex lib/R/library/survival/help/Surv +lib/R/library/survival/help/aareg lib/R/library/survival/help/aml lib/R/library/survival/help/anova.coxph -lib/R/library/survival/help/as.date lib/R/library/survival/help/attrassign +lib/R/library/survival/help/basehaz lib/R/library/survival/help/bladder lib/R/library/survival/help/cch +lib/R/library/survival/help/cgd lib/R/library/survival/help/clogit lib/R/library/survival/help/cluster lib/R/library/survival/help/colon lib/R/library/survival/help/cox.zph lib/R/library/survival/help/coxph +lib/R/library/survival/help/coxph.control lib/R/library/survival/help/coxph.detail lib/R/library/survival/help/coxph.object -lib/R/library/survival/help/date.ddmmmyy -lib/R/library/survival/help/date.mdy -lib/R/library/survival/help/date.mmddyy -lib/R/library/survival/help/date.mmddyyyy -lib/R/library/survival/help/date.object +lib/R/library/survival/help/dsurvreg lib/R/library/survival/help/frailty lib/R/library/survival/help/heart lib/R/library/survival/help/is.ratetable lib/R/library/survival/help/kidney lib/R/library/survival/help/lines.survfit lib/R/library/survival/help/lung -lib/R/library/survival/help/mdy.date +lib/R/library/survival/help/mgus lib/R/library/survival/help/nwtco lib/R/library/survival/help/ovarian lib/R/library/survival/help/pbc +lib/R/library/survival/help/pbcseq +lib/R/library/survival/help/plot.aareg lib/R/library/survival/help/plot.cox.zph lib/R/library/survival/help/plot.survfit lib/R/library/survival/help/predict.coxph lib/R/library/survival/help/predict.survreg +lib/R/library/survival/help/print.aareg +lib/R/library/survival/help/print.summary.coxph +lib/R/library/survival/help/print.summary.survfit lib/R/library/survival/help/print.survfit lib/R/library/survival/help/pspline lib/R/library/survival/help/pyears @@ -7956,13 +8476,17 @@ lib/R/library/survival/help/residuals.survreg lib/R/library/survival/help/ridge lib/R/library/survival/help/stanford2 lib/R/library/survival/help/strata +lib/R/library/survival/help/summary.aareg +lib/R/library/survival/help/summary.coxph lib/R/library/survival/help/summary.survfit +lib/R/library/survival/help/survConcordance lib/R/library/survival/help/survSplit lib/R/library/survival/help/survdiff lib/R/library/survival/help/survexp lib/R/library/survival/help/survexp.fit lib/R/library/survival/help/survexp.us lib/R/library/survival/help/survfit +lib/R/library/survival/help/survfit.coxph lib/R/library/survival/help/survfit.object lib/R/library/survival/help/survival-internal lib/R/library/survival/help/survobrien @@ -7970,45 +8494,49 @@ lib/R/library/survival/help/survreg lib/R/library/survival/help/survreg.control lib/R/library/survival/help/survreg.distributions lib/R/library/survival/help/survreg.object -lib/R/library/survival/help/survreg.old +lib/R/library/survival/help/survregDtest lib/R/library/survival/help/tcut lib/R/library/survival/help/tobin lib/R/library/survival/help/untangle.specials lib/R/library/survival/help/veteran lib/R/library/survival/html/00Index.html lib/R/library/survival/html/Surv.html +lib/R/library/survival/html/aareg.html lib/R/library/survival/html/aml.html lib/R/library/survival/html/anova.coxph.html -lib/R/library/survival/html/as.date.html lib/R/library/survival/html/attrassign.html +lib/R/library/survival/html/basehaz.html lib/R/library/survival/html/bladder.html lib/R/library/survival/html/cch.html +lib/R/library/survival/html/cgd.html lib/R/library/survival/html/clogit.html lib/R/library/survival/html/cluster.html lib/R/library/survival/html/colon.html lib/R/library/survival/html/cox.zph.html +lib/R/library/survival/html/coxph.control.html lib/R/library/survival/html/coxph.detail.html lib/R/library/survival/html/coxph.html lib/R/library/survival/html/coxph.object.html -lib/R/library/survival/html/date.ddmmmyy.html -lib/R/library/survival/html/date.mdy.html -lib/R/library/survival/html/date.mmddyy.html -lib/R/library/survival/html/date.mmddyyyy.html -lib/R/library/survival/html/date.object.html +lib/R/library/survival/html/dsurvreg.html lib/R/library/survival/html/frailty.html lib/R/library/survival/html/heart.html lib/R/library/survival/html/is.ratetable.html lib/R/library/survival/html/kidney.html lib/R/library/survival/html/lines.survfit.html lib/R/library/survival/html/lung.html -lib/R/library/survival/html/mdy.date.html +lib/R/library/survival/html/mgus.html lib/R/library/survival/html/nwtco.html lib/R/library/survival/html/ovarian.html lib/R/library/survival/html/pbc.html +lib/R/library/survival/html/pbcseq.html +lib/R/library/survival/html/plot.aareg.html lib/R/library/survival/html/plot.cox.zph.html lib/R/library/survival/html/plot.survfit.html lib/R/library/survival/html/predict.coxph.html lib/R/library/survival/html/predict.survreg.html +lib/R/library/survival/html/print.aareg.html +lib/R/library/survival/html/print.summary.coxph.html +lib/R/library/survival/html/print.summary.survfit.html lib/R/library/survival/html/print.survfit.html lib/R/library/survival/html/pspline.html lib/R/library/survival/html/pyears.html @@ -8019,12 +8547,16 @@ lib/R/library/survival/html/residuals.survreg.html lib/R/library/survival/html/ridge.html lib/R/library/survival/html/stanford2.html lib/R/library/survival/html/strata.html +lib/R/library/survival/html/summary.aareg.html +lib/R/library/survival/html/summary.coxph.html lib/R/library/survival/html/summary.survfit.html +lib/R/library/survival/html/survConcordance.html lib/R/library/survival/html/survSplit.html lib/R/library/survival/html/survdiff.html lib/R/library/survival/html/survexp.fit.html lib/R/library/survival/html/survexp.html lib/R/library/survival/html/survexp.us.html +lib/R/library/survival/html/survfit.coxph.html lib/R/library/survival/html/survfit.html lib/R/library/survival/html/survfit.object.html lib/R/library/survival/html/survival-internal.html @@ -8033,44 +8565,48 @@ lib/R/library/survival/html/survreg.control.html lib/R/library/survival/html/survreg.distributions.html lib/R/library/survival/html/survreg.html lib/R/library/survival/html/survreg.object.html -lib/R/library/survival/html/survreg.old.html +lib/R/library/survival/html/survregDtest.html lib/R/library/survival/html/tcut.html lib/R/library/survival/html/tobin.html lib/R/library/survival/html/untangle.specials.html lib/R/library/survival/html/veteran.html lib/R/library/survival/latex/Surv.tex +lib/R/library/survival/latex/aareg.tex lib/R/library/survival/latex/aml.tex lib/R/library/survival/latex/anova.coxph.tex -lib/R/library/survival/latex/as.date.tex lib/R/library/survival/latex/attrassign.tex +lib/R/library/survival/latex/basehaz.tex lib/R/library/survival/latex/bladder.tex lib/R/library/survival/latex/cch.tex +lib/R/library/survival/latex/cgd.tex lib/R/library/survival/latex/clogit.tex lib/R/library/survival/latex/cluster.tex lib/R/library/survival/latex/colon.tex lib/R/library/survival/latex/cox.zph.tex +lib/R/library/survival/latex/coxph.control.tex lib/R/library/survival/latex/coxph.detail.tex lib/R/library/survival/latex/coxph.object.tex lib/R/library/survival/latex/coxph.tex -lib/R/library/survival/latex/date.ddmmmyy.tex -lib/R/library/survival/latex/date.mdy.tex -lib/R/library/survival/latex/date.mmddyy.tex -lib/R/library/survival/latex/date.mmddyyyy.tex -lib/R/library/survival/latex/date.object.tex +lib/R/library/survival/latex/dsurvreg.tex lib/R/library/survival/latex/frailty.tex lib/R/library/survival/latex/heart.tex lib/R/library/survival/latex/is.ratetable.tex lib/R/library/survival/latex/kidney.tex lib/R/library/survival/latex/lines.survfit.tex lib/R/library/survival/latex/lung.tex -lib/R/library/survival/latex/mdy.date.tex +lib/R/library/survival/latex/mgus.tex lib/R/library/survival/latex/nwtco.tex lib/R/library/survival/latex/ovarian.tex lib/R/library/survival/latex/pbc.tex +lib/R/library/survival/latex/pbcseq.tex +lib/R/library/survival/latex/plot.aareg.tex lib/R/library/survival/latex/plot.cox.zph.tex lib/R/library/survival/latex/plot.survfit.tex lib/R/library/survival/latex/predict.coxph.tex lib/R/library/survival/latex/predict.survreg.tex +lib/R/library/survival/latex/print.aareg.tex +lib/R/library/survival/latex/print.summary.coxph.tex +lib/R/library/survival/latex/print.summary.survfit.tex lib/R/library/survival/latex/print.survfit.tex lib/R/library/survival/latex/pspline.tex lib/R/library/survival/latex/pyears.tex @@ -8081,12 +8617,16 @@ lib/R/library/survival/latex/residuals.survreg.tex lib/R/library/survival/latex/ridge.tex lib/R/library/survival/latex/stanford2.tex lib/R/library/survival/latex/strata.tex +lib/R/library/survival/latex/summary.aareg.tex +lib/R/library/survival/latex/summary.coxph.tex lib/R/library/survival/latex/summary.survfit.tex +lib/R/library/survival/latex/survConcordance.tex lib/R/library/survival/latex/survSplit.tex lib/R/library/survival/latex/survdiff.tex lib/R/library/survival/latex/survexp.fit.tex lib/R/library/survival/latex/survexp.tex lib/R/library/survival/latex/survexp.us.tex +lib/R/library/survival/latex/survfit.coxph.tex lib/R/library/survival/latex/survfit.object.tex lib/R/library/survival/latex/survfit.tex lib/R/library/survival/latex/survival-internal.tex @@ -8094,15 +8634,14 @@ lib/R/library/survival/latex/survobrien.tex lib/R/library/survival/latex/survreg.control.tex lib/R/library/survival/latex/survreg.distributions.tex lib/R/library/survival/latex/survreg.object.tex -lib/R/library/survival/latex/survreg.old.tex lib/R/library/survival/latex/survreg.tex +lib/R/library/survival/latex/survregDtest.tex lib/R/library/survival/latex/tcut.tex lib/R/library/survival/latex/tobin.tex lib/R/library/survival/latex/untangle.specials.tex lib/R/library/survival/latex/veteran.tex lib/R/library/survival/libs/survival.so lib/R/library/survival/man/survival.Rd.gz -lib/R/library/survival/survival.ps.gz lib/R/library/tcltk/CONTENTS lib/R/library/tcltk/DESCRIPTION lib/R/library/tcltk/INDEX @@ -8118,6 +8657,8 @@ lib/R/library/tcltk/R-ex/TkWidgetcmds.R lib/R/library/tcltk/R-ex/TkWidgets.R lib/R/library/tcltk/R-ex/tclServiceMode.R lib/R/library/tcltk/R-ex/tkProgressBar.R +lib/R/library/tcltk/R-ex/tk_choose.dir.R +lib/R/library/tcltk/R-ex/tk_choose.files.R lib/R/library/tcltk/R/tcltk lib/R/library/tcltk/R/tcltk.rdb lib/R/library/tcltk/R/tcltk.rdx @@ -8147,6 +8688,9 @@ lib/R/library/tcltk/help/tcltk-defunct lib/R/library/tcltk/help/tcltk-package lib/R/library/tcltk/help/tkProgressBar lib/R/library/tcltk/help/tkStartGUI +lib/R/library/tcltk/help/tk_choose.dir +lib/R/library/tcltk/help/tk_choose.files +lib/R/library/tcltk/help/tk_messageBox lib/R/library/tcltk/help/tk_select.list lib/R/library/tcltk/help/tkpager lib/R/library/tcltk/html/00Index.html @@ -8159,6 +8703,9 @@ lib/R/library/tcltk/html/tcltk-defunct.html lib/R/library/tcltk/html/tcltk-package.html lib/R/library/tcltk/html/tkProgressBar.html lib/R/library/tcltk/html/tkStartGUI.html +lib/R/library/tcltk/html/tk_choose.dir.html +lib/R/library/tcltk/html/tk_choose.files.html +lib/R/library/tcltk/html/tk_messageBox.html lib/R/library/tcltk/html/tk_select.list.html lib/R/library/tcltk/html/tkpager.html lib/R/library/tcltk/latex/TclInterface.tex @@ -8170,6 +8717,9 @@ lib/R/library/tcltk/latex/tcltk-defunct.tex lib/R/library/tcltk/latex/tcltk-package.tex lib/R/library/tcltk/latex/tkProgressBar.tex lib/R/library/tcltk/latex/tkStartGUI.tex +lib/R/library/tcltk/latex/tk_choose.dir.tex +lib/R/library/tcltk/latex/tk_choose.files.tex +lib/R/library/tcltk/latex/tk_messageBox.tex lib/R/library/tcltk/latex/tk_select.list.tex lib/R/library/tcltk/latex/tkpager.tex lib/R/library/tcltk/libs/tcltk.so @@ -8197,16 +8747,19 @@ lib/R/library/tools/Meta/hsearch.rds lib/R/library/tools/Meta/nsInfo.rds lib/R/library/tools/Meta/package.rds lib/R/library/tools/NAMESPACE +lib/R/library/tools/R-ex/Rd2HTML.R lib/R/library/tools/R-ex/Rdutils.R lib/R/library/tools/R-ex/charsets.R lib/R/library/tools/R-ex/checkFF.R lib/R/library/tools/R-ex/delimMatch.R +lib/R/library/tools/R-ex/dependsOnPkgs.R lib/R/library/tools/R-ex/encoded.R lib/R/library/tools/R-ex/fileutils.R lib/R/library/tools/R-ex/getDepList.R lib/R/library/tools/R-ex/installFoundDepends.R lib/R/library/tools/R-ex/makeLazyLoading.R lib/R/library/tools/R-ex/md5sum.R +lib/R/library/tools/R-ex/parse_Rd.R lib/R/library/tools/R-ex/readNEWS.R lib/R/library/tools/R-ex/showNonASCII.R lib/R/library/tools/R-ex/undoc.R @@ -8218,6 +8771,8 @@ lib/R/library/tools/R/tools.rdb lib/R/library/tools/R/tools.rdx lib/R/library/tools/help/AnIndex lib/R/library/tools/help/QC +lib/R/library/tools/help/Rd2HTML +lib/R/library/tools/help/Rdiff lib/R/library/tools/help/Rdindex lib/R/library/tools/help/Rdutils lib/R/library/tools/help/buildVignettes @@ -8228,6 +8783,7 @@ lib/R/library/tools/help/checkTnF lib/R/library/tools/help/checkVignettes lib/R/library/tools/help/codoc lib/R/library/tools/help/delimMatch +lib/R/library/tools/help/dependsOnPkgs lib/R/library/tools/help/encoded lib/R/library/tools/help/fileutils lib/R/library/tools/help/getDepList @@ -8235,9 +8791,11 @@ lib/R/library/tools/help/installFoundDepends lib/R/library/tools/help/makeLazyLoading lib/R/library/tools/help/md5sum lib/R/library/tools/help/package.dependencies +lib/R/library/tools/help/parse_Rd lib/R/library/tools/help/read.00Index lib/R/library/tools/help/readNEWS lib/R/library/tools/help/showNonASCII +lib/R/library/tools/help/testInstalledPackage lib/R/library/tools/help/texi2dvi lib/R/library/tools/help/tools-defunct lib/R/library/tools/help/tools-deprecated @@ -8248,6 +8806,8 @@ lib/R/library/tools/help/writePACKAGES lib/R/library/tools/help/xgettext lib/R/library/tools/html/00Index.html lib/R/library/tools/html/QC.html +lib/R/library/tools/html/Rd2HTML.html +lib/R/library/tools/html/Rdiff.html lib/R/library/tools/html/Rdindex.html lib/R/library/tools/html/Rdutils.html lib/R/library/tools/html/buildVignettes.html @@ -8258,6 +8818,7 @@ lib/R/library/tools/html/checkTnF.html lib/R/library/tools/html/checkVignettes.html lib/R/library/tools/html/codoc.html lib/R/library/tools/html/delimMatch.html +lib/R/library/tools/html/dependsOnPkgs.html lib/R/library/tools/html/encoded.html lib/R/library/tools/html/fileutils.html lib/R/library/tools/html/getDepList.html @@ -8265,9 +8826,11 @@ lib/R/library/tools/html/installFoundDepends.html lib/R/library/tools/html/makeLazyLoading.html lib/R/library/tools/html/md5sum.html lib/R/library/tools/html/package.dependencies.html +lib/R/library/tools/html/parse_Rd.html lib/R/library/tools/html/read.00Index.html lib/R/library/tools/html/readNEWS.html lib/R/library/tools/html/showNonASCII.html +lib/R/library/tools/html/testInstalledPackage.html lib/R/library/tools/html/texi2dvi.html lib/R/library/tools/html/tools-defunct.html lib/R/library/tools/html/tools-deprecated.html @@ -8277,6 +8840,8 @@ lib/R/library/tools/html/vignetteDepends.html lib/R/library/tools/html/writePACKAGES.html lib/R/library/tools/html/xgettext.html lib/R/library/tools/latex/QC.tex +lib/R/library/tools/latex/Rd2HTML.tex +lib/R/library/tools/latex/Rdiff.tex lib/R/library/tools/latex/Rdindex.tex lib/R/library/tools/latex/Rdutils.tex lib/R/library/tools/latex/buildVignettes.tex @@ -8287,6 +8852,7 @@ lib/R/library/tools/latex/checkTnF.tex lib/R/library/tools/latex/checkVignettes.tex lib/R/library/tools/latex/codoc.tex lib/R/library/tools/latex/delimMatch.tex +lib/R/library/tools/latex/dependsOnPkgs.tex lib/R/library/tools/latex/encoded.tex lib/R/library/tools/latex/fileutils.tex lib/R/library/tools/latex/getDepList.tex @@ -8294,9 +8860,11 @@ lib/R/library/tools/latex/installFoundDepends.tex lib/R/library/tools/latex/makeLazyLoading.tex lib/R/library/tools/latex/md5sum.tex lib/R/library/tools/latex/package.dependencies.tex +lib/R/library/tools/latex/parse_Rd.tex lib/R/library/tools/latex/read.00Index.tex lib/R/library/tools/latex/readNEWS.tex lib/R/library/tools/latex/showNonASCII.tex +lib/R/library/tools/latex/testInstalledPackage.tex lib/R/library/tools/latex/texi2dvi.tex lib/R/library/tools/latex/tools-defunct.tex lib/R/library/tools/latex/tools-deprecated.tex @@ -8397,6 +8965,7 @@ lib/R/library/utils/R-ex/read.socket.R lib/R/library/utils/R-ex/recover.R lib/R/library/utils/R-ex/relist.R lib/R/library/utils/R-ex/roman.R +lib/R/library/utils/R-ex/rtags.R lib/R/library/utils/R-ex/savehistory.R lib/R/library/utils/R-ex/select.list.R lib/R/library/utils/R-ex/sessionInfo.R @@ -8407,7 +8976,6 @@ lib/R/library/utils/R-ex/txtProgressBar.R lib/R/library/utils/R-ex/update.packages.R lib/R/library/utils/R-ex/url.show.R lib/R/library/utils/R-ex/vignette.R -lib/R/library/utils/R-ex/withVisible.R lib/R/library/utils/R-ex/write.table.R lib/R/library/utils/R/utils lib/R/library/utils/R/utils.rdb @@ -8502,6 +9070,7 @@ lib/R/library/utils/help/recover lib/R/library/utils/help/relist lib/R/library/utils/help/remove.packages lib/R/library/utils/help/roman +lib/R/library/utils/help/rtags lib/R/library/utils/help/savehistory lib/R/library/utils/help/select.list lib/R/library/utils/help/sessionInfo @@ -8512,13 +9081,13 @@ lib/R/library/utils/help/summaryRprof lib/R/library/utils/help/toLatex lib/R/library/utils/help/txtProgressBar lib/R/library/utils/help/type.convert +lib/R/library/utils/help/unzip lib/R/library/utils/help/update.packages lib/R/library/utils/help/url.show lib/R/library/utils/help/utils-defunct lib/R/library/utils/help/utils-deprecated lib/R/library/utils/help/utils-package lib/R/library/utils/help/vignette -lib/R/library/utils/help/withVisible lib/R/library/utils/help/write.table lib/R/library/utils/help/zip.file.extract lib/R/library/utils/html/00Index.html @@ -8610,6 +9179,7 @@ lib/R/library/utils/html/recover.html lib/R/library/utils/html/relist.html lib/R/library/utils/html/remove.packages.html lib/R/library/utils/html/roman.html +lib/R/library/utils/html/rtags.html lib/R/library/utils/html/savehistory.html lib/R/library/utils/html/select.list.html lib/R/library/utils/html/sessionInfo.html @@ -8620,13 +9190,13 @@ lib/R/library/utils/html/summaryRprof.html lib/R/library/utils/html/toLatex.html lib/R/library/utils/html/txtProgressBar.html lib/R/library/utils/html/type.convert.html +lib/R/library/utils/html/unzip.html lib/R/library/utils/html/update.packages.html lib/R/library/utils/html/url.show.html lib/R/library/utils/html/utils-defunct.html lib/R/library/utils/html/utils-deprecated.html lib/R/library/utils/html/utils-package.html lib/R/library/utils/html/vignette.html -lib/R/library/utils/html/withVisible.html lib/R/library/utils/html/write.table.html lib/R/library/utils/html/zip.file.extract.html lib/R/library/utils/iconvlist @@ -8718,6 +9288,7 @@ lib/R/library/utils/latex/recover.tex lib/R/library/utils/latex/relist.tex lib/R/library/utils/latex/remove.packages.tex lib/R/library/utils/latex/roman.tex +lib/R/library/utils/latex/rtags.tex lib/R/library/utils/latex/savehistory.tex lib/R/library/utils/latex/select.list.tex lib/R/library/utils/latex/sessionInfo.tex @@ -8728,13 +9299,13 @@ lib/R/library/utils/latex/summaryRprof.tex lib/R/library/utils/latex/toLatex.tex lib/R/library/utils/latex/txtProgressBar.tex lib/R/library/utils/latex/type.convert.tex +lib/R/library/utils/latex/unzip.tex lib/R/library/utils/latex/update.packages.tex lib/R/library/utils/latex/url.show.tex lib/R/library/utils/latex/utils-defunct.tex lib/R/library/utils/latex/utils-deprecated.tex lib/R/library/utils/latex/utils-package.tex lib/R/library/utils/latex/vignette.tex -lib/R/library/utils/latex/withVisible.tex lib/R/library/utils/latex/write.table.tex lib/R/library/utils/latex/zip.file.extract.tex lib/R/library/utils/man/utils.Rd.gz @@ -8755,6 +9326,11 @@ lib/R/%%DATADIR%%/nspackloader.R lib/R/%%DATADIR%%/packloader.R lib/R/share/encodings/Adobe-glyphlist lib/R/share/encodings/character-sets +lib/R/share/R/REMOVE.R +lib/R/share/R/Rdiff.R +lib/R/share/R/examples-footer.R +lib/R/share/R/examples-header.R +lib/R/share/R/tests-startup.R lib/R/share/java/getsp.class lib/R/share/licenses/AGPL-3 lib/R/share/licenses/Artistic-1.0 @@ -8765,23 +9341,25 @@ lib/R/share/licenses/LGPL-2 lib/R/share/licenses/LGPL-2.1 lib/R/share/licenses/LGPL-3 lib/R/share/licenses/license.db -lib/R/share/locale/de/LC_MESSAGES/R.mo -lib/R/share/locale/en/LC_MESSAGES/R.mo -lib/R/share/locale/en@quot/LC_MESSAGES/R.mo -lib/R/share/locale/en_GB/LC_MESSAGES/R.mo -lib/R/share/locale/es/LC_MESSAGES/R.mo -lib/R/share/locale/fr/LC_MESSAGES/R.mo -lib/R/share/locale/it/LC_MESSAGES/R.mo -lib/R/share/locale/ja/LC_MESSAGES/R.mo -lib/R/share/locale/ko/LC_MESSAGES/R.mo -lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo -lib/R/share/locale/ru/LC_MESSAGES/R.mo -lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo -lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/de/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/en/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/en@quot/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/en_GB/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/es/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/fr/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/it/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/ja/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/ko/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/ru/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo +%%NLS%%lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo lib/R/share/make/check.mk +lib/R/share/make/basepkg.mk +lib/R/share/make/clean.mk +lib/R/share/make/winshlib.mk lib/R/share/make/config.mk lib/R/share/make/shlib.mk -lib/R/share/make/tests.mk lib/R/share/make/vars.mk lib/R/share/perl/File/Copy/Recursive.pm lib/R/share/perl/R/Dcf.pm @@ -8793,9 +9371,7 @@ lib/R/share/perl/R/Rdtools.pm lib/R/share/perl/R/Utils.pm lib/R/share/perl/R/Vars.pm lib/R/share/perl/Text/DelimMatch.pm -lib/R/share/perl/build-help-windows.pl lib/R/share/perl/build-help.pl -lib/R/share/perl/massage-Examples.pl lib/R/share/sh/dcf.sh lib/R/share/sh/echo.sh lib/R/share/sh/help-links.sh @@ -8853,14 +9429,29 @@ libdata/pkgconfig/libR.pc %%DOCSDIR%%/manual/R-intro.html %%DOCSDIR%%/manual/R-ints.html %%DOCSDIR%%/manual/R-lang.html -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf -%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi +%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi +%%PORTDOCS%%%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf +%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf @dirrm %%DOCSDIR%%/manual @dirrm %%DOCSDIR%%/html/search @dirrm %%DOCSDIR%%/html @@ -8873,33 +9464,33 @@ libdata/pkgconfig/libR.pc @dirrm lib/R/share/perl/File @dirrm lib/R/share/perl @dirrm lib/R/share/make -@dirrm lib/R/share/locale/zh_TW/LC_MESSAGES -@dirrm lib/R/share/locale/zh_TW -@dirrm lib/R/share/locale/zh_CN/LC_MESSAGES -@dirrm lib/R/share/locale/zh_CN -@dirrm lib/R/share/locale/ru/LC_MESSAGES -@dirrm lib/R/share/locale/ru -@dirrm lib/R/share/locale/pt_BR/LC_MESSAGES -@dirrm lib/R/share/locale/pt_BR -@dirrm lib/R/share/locale/ko/LC_MESSAGES -@dirrm lib/R/share/locale/ko -@dirrm lib/R/share/locale/ja/LC_MESSAGES -@dirrm lib/R/share/locale/ja -@dirrm lib/R/share/locale/it/LC_MESSAGES -@dirrm lib/R/share/locale/it -@dirrm lib/R/share/locale/fr/LC_MESSAGES -@dirrm lib/R/share/locale/fr -@dirrm lib/R/share/locale/es/LC_MESSAGES -@dirrm lib/R/share/locale/es -@dirrm lib/R/share/locale/en_GB/LC_MESSAGES -@dirrm lib/R/share/locale/en_GB -@dirrm lib/R/share/locale/en@quot/LC_MESSAGES -@dirrm lib/R/share/locale/en@quot -@dirrm lib/R/share/locale/en/LC_MESSAGES -@dirrm lib/R/share/locale/en -@dirrm lib/R/share/locale/de/LC_MESSAGES -@dirrm lib/R/share/locale/de -@dirrm lib/R/share/locale +%%NLS%%@dirrm lib/R/share/locale/zh_TW/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/zh_TW +%%NLS%%@dirrm lib/R/share/locale/zh_CN/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/zh_CN +%%NLS%%@dirrm lib/R/share/locale/ru/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/ru +%%NLS%%@dirrm lib/R/share/locale/pt_BR/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/pt_BR +%%NLS%%@dirrm lib/R/share/locale/ko/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/ko +%%NLS%%@dirrm lib/R/share/locale/ja/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/ja +%%NLS%%@dirrm lib/R/share/locale/it/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/it +%%NLS%%@dirrm lib/R/share/locale/fr/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/fr +%%NLS%%@dirrm lib/R/share/locale/es/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/es +%%NLS%%@dirrm lib/R/share/locale/en_GB/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/en_GB +%%NLS%%@dirrm lib/R/share/locale/en@quot/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/en@quot +%%NLS%%@dirrm lib/R/share/locale/en/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/en +%%NLS%%@dirrm lib/R/share/locale/de/LC_MESSAGES +%%NLS%%@dirrm lib/R/share/locale/de +%%NLS%%@dirrm lib/R/share/locale @dirrm lib/R/share/licenses @dirrm lib/R/share/java @dirrm lib/R/share/encodings @@ -9087,15 +9678,15 @@ libdata/pkgconfig/libR.pc %%NLS%%@dirrm lib/R/library/spatial/po/en@quot/LC_MESSAGES %%NLS%%@dirrm lib/R/library/spatial/po/en@quot %%NLS%%@dirrm lib/R/library/spatial/po -%%NLS%%@dirrm lib/R/library/spatial/man -%%NLS%%@dirrm lib/R/library/spatial/libs -%%NLS%%@dirrm lib/R/library/spatial/latex -%%NLS%%@dirrm lib/R/library/spatial/html -%%NLS%%@dirrm lib/R/library/spatial/help -%%NLS%%@dirrm lib/R/library/spatial/R-ex -%%NLS%%@dirrm lib/R/library/spatial/R -%%NLS%%@dirrm lib/R/library/spatial/Meta -%%NLS%%@dirrm lib/R/library/spatial +@dirrm lib/R/library/spatial/man +@dirrm lib/R/library/spatial/libs +@dirrm lib/R/library/spatial/latex +@dirrm lib/R/library/spatial/html +@dirrm lib/R/library/spatial/help +@dirrm lib/R/library/spatial/R-ex +@dirrm lib/R/library/spatial/R +@dirrm lib/R/library/spatial/Meta +@dirrm lib/R/library/spatial %%NLS%%@dirrm lib/R/library/rpart/po/ru/LC_MESSAGES %%NLS%%@dirrm lib/R/library/rpart/po/ru %%NLS%%@dirrm lib/R/library/rpart/po/fr/LC_MESSAGES @@ -9375,6 +9966,20 @@ libdata/pkgconfig/libR.pc @dirrm lib/R/library/base/R @dirrm lib/R/library/base/Meta @dirrm lib/R/library/base +@dirrm lib/R/library/Matrix/Meta +@dirrm lib/R/library/Matrix/R +@dirrm lib/R/library/Matrix/R-ex +@dirrm lib/R/library/Matrix/data +@dirrm lib/R/library/Matrix/doc/UFsparse +@dirrm lib/R/library/Matrix/doc +@dirrm lib/R/library/Matrix/external +@dirrm lib/R/library/Matrix/help +@dirrm lib/R/library/Matrix/html +@dirrm lib/R/library/Matrix/include +@dirrm lib/R/library/Matrix/latex +@dirrm lib/R/library/Matrix/libs +@dirrm lib/R/library/Matrix/man +@dirrm lib/R/library/Matrix @dirrm lib/R/library/MASS/scripts %%NLS%%@dirrm lib/R/library/MASS/po/fr/LC_MESSAGES %%NLS%%@dirrm lib/R/library/MASS/po/fr |