Add jags, Just Another Gibbs Sampler. A program for Bayesian analysis of

graphical models via Gibbs sampling, not wholy unlike classic BUGS.

PR:		ports/66648
Submitted by:	Eric van Gyzen <vangyzen@stat.duke.edu>

1 files changed, 48 insertions, 0 deletions

diff --git a/math/jags/Makefile b/math/jags/Makefile
new file mode 100644
index 000000000000..7d51506eae31
--- /dev/null
+++ b/math/jags/Makefile
@@ -0,0 +1,48 @@
+# Ports collection Makefile for:	jags
+# Date created:				21 April 2004
+# Whom:					Eric van Gyzen <vangyzen@stat.duke.edu>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	jags
+PORTVERSION=	0.50
+CATEGORIES=	math
+MASTER_SITES=	http://www-fis.iarc.fr/~martyn/software/jags/
+DISTNAME=	${PORTNAME:U}-${PORTVERSION}
+.if !defined(NOPORTDOCS)
+DISTFILES=	${DISTNAME}${EXTRACT_SUFX} bugs-examples.tar.gz manual.pdf
+EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
+.endif
+
+MAINTAINER=	vangyzen@stat.duke.edu
+COMMENT=	Just Another Gibbs Sampler
+
+LIB_DEPENDS=	Rmath.0:${PORTSDIR}/math/libRmath
+
+.if defined(WITH_ATLAS)
+LIB_DEPENDS+=	f77blas.1:${PORTSDIR}/math/atlas
+CONFIGURE_ARGS=	--with-lapack=-lalapack --with-blas=-lf77blas
+.else
+LIB_DEPENDS+=	lapack.3:${PORTSDIR}/math/lapack
+CONFIGURE_ARGS=	--with-lapack=-llapack --with-blas=-lblas
+.endif
+
+USE_BISON=	yes
+
+DIST_SUBDIR=	${PORTNAME}
+
+GNU_CONFIGURE=	yes
+CONFIGURE_ENV=	CPPFLAGS=-I${PREFIX}/include LDFLAGS=-L${PREFIX}/lib
+
+post-install:
+.if !defined(NOPORTDOCS)
+	${MKDIR} ${DOCSDIR}
+	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/manual.pdf ${DOCSDIR}
+	${MKDIR} ${EXAMPLESDIR}
+	( cd ${EXAMPLESDIR}; \
+	  ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/bugs-examples.tar.gz \
+	    -s ':^bugs-examples/*::' )
+.endif
+
+.include <bsd.port.mk>