diff options
| author | Rene Ladan <rene@FreeBSD.org> | 2025-01-01 11:16:27 +0000 |
|---|---|---|
| committer | Rene Ladan <rene@FreeBSD.org> | 2025-01-01 11:16:36 +0000 |
| commit | da8a6c5ce6e26ac014fe8a8311ba6e7d660631a7 (patch) | |
| tree | c984b8067b2d41d76e4bb56f69fcfddf53ab9ad5 /math | |
| parent | 0a48df48aa0a2427b474a81992cba79406d0389e (diff) | |
math/sage: Remove expired port
2024-12-31 math/sage: Broken for more than two years.
Diffstat (limited to 'math')
37 files changed, 0 insertions, 9690 deletions
diff --git a/math/Makefile b/math/Makefile index 7b5298ddec25..e4c2c0bca578 100644 --- a/math/Makefile +++ b/math/Makefile @@ -1157,7 +1157,6 @@ SUBDIR += rubygem-rb-gsl SUBDIR += rumur SUBDIR += saga - SUBDIR += sage SUBDIR += savage SUBDIR += sc SUBDIR += sc-im diff --git a/math/sage/Makefile b/math/sage/Makefile deleted file mode 100644 index 47d5bcea6a1a..000000000000 --- a/math/sage/Makefile +++ /dev/null @@ -1,576 +0,0 @@ -PORTNAME= sage -PORTVERSION= 9.2 -PORTREVISION= 48 -CATEGORIES= math -MASTER_SITES= https://mirrors.xmission.com/sage/src/ \ - http://mirrors.xmission.com/sage/src/ \ - https://www-ftp.lip6.fr/pub/math/sagemath/src/ \ - https://mirrors.mit.edu/sage/src/ \ - https://files.sagemath.org/src/ \ - ftp://www-ftp.lip6.fr/pub/math/sagemath/src/ -#MASTER_SITES= ftp://www-ftp.lip6.fr/pub/math/sagemath/devel/ -PKGNAMESUFFIX= -math - -MAINTAINER= thierry@FreeBSD.org -COMMENT= Open source Mathematics software -WWW= https://www.sagemath.org/ - -LICENSE= GPLv3 -LICENSE_FILE= ${WRKSRC}/COPYING.txt - -BROKEN= hoping to fix it with Python-3.9 -EXPIRATION_DATE=2024-12-31 - -BUILD_DEPENDS= bash:shells/bash \ - dash:shells/dash \ - cmake:devel/cmake-core \ - dreadnaut:math/nauty \ - ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}attrs>0:devel/py-attrs@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}backcall>0:devel/py-backcall@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cffi>0:devel/py-cffi@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cvxopt>0:math/py-cvxopt@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cypari2>0:math/py-cypari2@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cysignals>0:devel/py-cysignals@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}cython>0:lang/cython@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}python-dateutil>0:devel/py-python-dateutil@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}decorator>0:devel/py-decorator@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}defusedxml>0:devel/py-defusedxml@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}docutils>0:textproc/py-docutils@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}entrypoints>0:devel/py-entrypoints@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}fpylll>0:math/py-fpylll@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}gmpy2>0:math/py-gmpy2@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}html5lib>0:www/py-html5lib@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}imagesize>0:graphics/py-imagesize@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}importlib-metadata>0:devel/py-importlib-metadata@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}ipykernel>0:devel/py-ipykernel@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR}\ - 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p5-File-Slurp>0:devel/p5-File-Slurp \ - p5-JSON>0:converters/p5-JSON \ - p5-SVG>0:textproc/p5-SVG \ - p5-MongoDB>0:databases/p5-MongoDB \ - p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\ - palp>0:math/palp \ - pandoc:textproc/hs-pandoc \ - pari-elldata>0:math/pari_elldata\ - pari-galdata>0:math/pari_galdata\ - pari-galpol>0:math/pari_galpol \ - pari-nftables>0:math/pari_nftables \ - pari-seadata>0:math/pari_seadata\ - QuadraticSieve:math/flintqs \ - gpatch:devel/patch \ - rubiks>0:math/rubiks \ - sympow:math/sympow \ - tachyon:graphics/tachyon \ - three.js>0:www/threejs \ - yasm:devel/yasm \ - gtar:archivers/gtar \ - ffmpeg:multimedia/ffmpeg \ - ${LOCALBASE}/lib/libBLT.a:x11-toolkits/blt -LIB_DEPENDS= libarb.so:math/arb \ - libboost_thread.so:devel/boost-libs \ - libbraiding.so:math/libbraiding \ - libbrial.so:math/brial \ - libCbc.so:math/cbc \ - libcdd.so:math/cddlib \ - libcliquer.so:math/cliquer \ - libcurl.so:ftp/curl \ - libeantic.so:math/e-antic \ - libec.so:math/eclib \ - libecl.so:lang/ecl \ - 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libumfpack.so:math/suitesparse-umfpack \ - libsemigroups.so:math/libsemigroups \ - libsymmetrica.so:math/symmetrica\ - libzmq.so:net/libzmq4 \ - libzn_poly-0.9.so:math/zn_poly \ - libqd.so:math/qd \ - libisl.so:devel/isl \ - libblas.so:math/blas \ - libicuuc.so:devel/icu \ - libtiff.so:graphics/tiff \ - liblapack.so:math/lapack \ - libedit.so:devel/libedit \ - libwebp.so:graphics/webp \ - libpcre2-8.so:devel/pcre2 \ - libgdbm.so:databases/gdbm \ - liblcms2.so:graphics/lcms2 \ - libopenjp2.so:graphics/openjpeg -RUN_DEPENDS= bash:shells/bash \ - dreadnaut:math/nauty \ - ${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}attrs>0:devel/py-attrs@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}Babel>0:devel/py-babel@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}backcall>0:devel/py-backcall@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}brial>0:math/py-brial@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}certifi>0:security/py-certifi@${PY_FLAVOR}\ - 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${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}send2trash>0:deskutils/py-send2trash@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}simplegeneric>0:devel/py-simplegeneric@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}snowballstemmer>0:textproc/py-snowballstemmer@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-applehelp>0:textproc/py-sphinxcontrib-applehelp@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-devhelp>0:textproc/py-sphinxcontrib-devhelp@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-htmlhelp>0:textproc/py-sphinxcontrib-htmlhelp@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-jsmath>0:textproc/py-sphinxcontrib-jsmath@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-qthelp>0:textproc/py-sphinxcontrib-qthelp@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-serializinghtml>0:textproc/py-sphinxcontrib-serializinghtml@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sphinxcontrib-websupport>0:textproc/py-sphinxcontrib-websupport@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}sympy>0:math/py-sympy@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}terminado>0:net/py-terminado@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}testpath>0:devel/py-testpath@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}tornado>0:www/py-tornado@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}traitlets>0:devel/py-traitlets@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}tzlocal>0:devel/py-tzlocal@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}vcversioner>0:devel/py-vcversioner@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}wcwidth>0:devel/py-wcwidth@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}webencodings>0:converters/py-webencodings@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}widgetsnbextension>0:devel/py-widgetsnbextension@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}zipp>0:devel/py-zipp@${PY_FLAVOR}\ - ${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\ - fflas-ffpack-config:math/fflas-ffpack \ - fricas>0:math/fricas \ - gfan:math/gfan \ - git:devel/git \ - gp2c:math/gp2c \ - jmol:science/jmol \ - MathJax>0:www/mathjax \ - maxima>0:math/maxima \ - p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\ - palp>0:math/palp \ - pandoc:textproc/hs-pandoc \ - pari-elldata>0:math/pari_elldata\ - pari-galdata>0:math/pari_galdata\ - pari-galpol>0:math/pari_galpol \ - pari-nftables>0:math/pari_nftables \ - pari-seadata>0:math/pari_seadata\ - QuadraticSieve:math/flintqs \ - rubiks>0:math/rubiks \ - sympow:math/sympow \ - tachyon:graphics/tachyon \ - three.js>0:www/threejs \ - yasm:devel/yasm \ - pixz:archivers/pixz - -USES= autoreconf blaslapack:openblas compiler:c++11-lib fortran \ - gettext gmake gnome iconv java jpeg libtool localbase magick:6,build \ - ncurses ninja:build perl5 pkgconfig python readline shebangfix \ - sqlite tex tk xorg -USE_TEX= latex:build pdftex:build tex:build -USE_XORG= x11 xext xscrnsaver -USE_GNOME= cairo glib20 pango -USE_PYTHON= cython - -CONFLICTS= ${PYTHON_PKGNAMEPREFIX}wheel-0.* - -SHEBANG_FILES= . -SHEBANG_LANG+= dash -dash_OLD_CMD= /bin/dash -dash_CMD= ${LOCALBASE}/bin/dash - -DISABLE_BINUTILS= yes - -LIBS= -lomp -pthread -.if !defined{WITH_DEBUG} -LDFLAGS+= -s -.endif -BLDDIR= ${WRKDIR}/build -GNU_CONFIGURE= yes -CONFIGURE_ENV= SAGE_PORT=yes CC=${CC} GCC=${CC} CXX=${CXX} AS=${AS} LD=${LD} \ - SAGE_LOCAL=${PREFIX} SAGE_DESTDIR=${BLDDIR}/ \ - DESTDIR=${BLDDIR}/${PREFIX} PATCH=${LOCALBASE}/bin/gpatch -CONFIGURE_ARGS= --with-system-gcc=force \ - --with-system-python3=yes \ - --with-python=${PYTHON_CMD} \ - --enable-build-as-root \ - --disable-download-from-upstream-url \ - --localstatedir=/var -MAKE_ENV= MAKE=${GMAKE} DESTDIR=${BLDDIR} -ALL_TARGET= build -REINPLACE_ARGS= -i '' -BINARY_ALIAS= patch=${LOCALBASE}/bin/gpatch -OPTIONS_SUB= yes -PLIST_SUB= VER=${DISTVERSION} -SUB_FILES= pkg-message - -OPTIONS_DEFINE= DOCS -PORTDOCS= * - -.include <bsd.port.pre.mk> - -WSDIR= ${BLDDIR}${PREFIX} -SPKG_INST= configure.ac configure build/sage_bootstrap/uninstall.py \ - build/make/install src/bin/sage-env -PY2FIX= bin lib/${PYTHON_VERSION} -DOC2FIX= .pickle .doctree -SE2FIX= ^ECLDIR= ^SINGULAR MAXIMA_PREFIX -SHR2FIX= GAP_ROOT_DIR PPLPY_DOCS SINGULARPATH -STG2FIX= bin/sage-env-config \ - share/jupyter/kernels/sagemath/kernel.json -BADLN= kernels/sagemath/doc nbextensions/jsmol \ - nbextensions/mathjax nbextensions/threejs -# External dependencies not yet handled by SageMath -# Note: do not use wheel from ports -PY_LIBS= alabaster attrs babel backcall bleach certifi cffi cvxopt cycler \ - cypari cysignals cython dateutil decorator defusedxml docutils \ - entrypoints fpylll gmpy2 html5lib imagesize importlib_metadata ipykernel ipython \ - ipython_genutils ipywidgets itsdangerous jedi jinja2 jsonschema jupyter_client \ - jupyter_core kiwisolver markupsafe matplotlib mistune mpmath \ - nbconvert nbformat networkx nose notebook numpy packaging pandocfilters \ - parso pathpy pexpect pickleshare pillow pkgconfig pplpy \ - prometheus_client prompt_toolkit psutil ptyprocess pybind11 pycparser pyparsing \ - pygments pyrsistent pytz pyzmq requests rpy2 scandir scipy send2trash simplegeneric \ - six snowballstemmer sphinx sphinxcontrib_applehelp sphinxcontrib_devhelp sphinxcontrib_htmlhelp sphinxcontrib_jsmath sphinxcontrib_qthelp sphinxcontrib_serializinghtml sphinxcontrib_websupport sympy terminado testpath tornado traitlets \ - tzlocal vcversioner wcwidth webencodings widgetsnbextension zipp zope_interface -JS_LIBS= jmol mathjax threejs -SPKGCM4= e_antic ecl gap libhomfly linbox maxima pynac rubiks singular - -post-patch: - ${CP} ${FILESDIR}/psutil__arch__bsd__freebsd_socks.c.patch \ - ${WRKSRC}/build/pkgs/psutil/patches/ -.for sp in ${SPKGCM4} - ${CP} ${FILESDIR}/${sp}_spkg-configure.m4 \ - ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 -.endfor -.for sp in ${PY_LIBS} - ${CP} ${FILESDIR}/py_libs_spkg-configure.m4 \ - ${WRKSRC}/build/pkgs/${sp:C/pari2/pari/}/spkg-configure.m4 -.endfor -#.for sp in ${PY_FILES} -# ${SED} -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \ -# > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 -#.endfor -.for sp in ${JS_LIBS} - ${SED} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \ - > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4 -.endfor - -pre-configure: - ${REINPLACE_CMD} -e 's|SAGE_LOCAL="$$prefix"|SAGE_LOCAL="${WSDIR}"|' \ - -e 's|lib/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/configure.ac - ${REINPLACE_CMD} -e 's|SAGE_LOCAL="@prefix@"|SAGE_LOCAL="${WSDIR}"|' \ - ${WRKSRC}/src/bin/sage-env-config.in - ${REINPLACE_CMD} -e 's|%%CFLAGS%%|${CFLAGS}|;s|%%LDFLAGS%%|${LDFLAGS}|' \ - ${WRKSRC}/build/pkgs/tachyon/patches/Make-arch.patch - ${REINPLACE_CMD} -e '/SUITESPARSE_INC_DIR/s|$${SAGE_LOCAL}/include|${LOCALBASE}/include/suitesparse|'\ - ${WRKSRC}/build/pkgs/cvxopt/spkg-install.in - ${REINPLACE_CMD} -e 's|exec python3|exec ${PYTHON_CMD}|' \ - -e 's|exec "$$SAGE_LOCAL"/bin/python3|exec ${PYTHON_CMD}|' \ - ${WRKSRC}/src/bin/sage -.for f in ${PY_LIBS} - ${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|;s|py_libs|${f}|' \ - ${WRKSRC}/build/pkgs/${f}/spkg-configure.m4 -.endfor - ${REINPLACE_CMD} -e 's|import attrs|import attr|' \ - ${WRKSRC}/build/pkgs/attrs/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import cypari|import cypari2|' \ - ${WRKSRC}/build/pkgs/cypari/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import ipython|import IPython|' \ - ${WRKSRC}/build/pkgs/ipython/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import pathpy|import path|' \ - ${WRKSRC}/build/pkgs/pathpy/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import pillow|import PIL|' \ - ${WRKSRC}/build/pkgs/pillow/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import pplpy|import ppl|' \ - ${WRKSRC}/build/pkgs/pplpy/spkg-configure.m4 - ${REINPLACE_CMD} -e 's|import pyzmq|import zmq|' \ - ${WRKSRC}/build/pkgs/pyzmq/spkg-configure.m4 -.for f in applehelp devhelp htmlhelp jsmath qthelp serializinghtml websupport - ${REINPLACE_CMD} -e 's|import sphinxcontrib_|import sphinxcontrib.|' \ - ${WRKSRC}/build/pkgs/sphinxcontrib_${f}/spkg-configure.m4 -.endfor - ${REINPLACE_CMD} -e 's|import zope_interface|import zope.interface|' \ - ${WRKSRC}/build/pkgs/zope_interface/spkg-configure.m4 - ${REINPLACE_CMD} -e '/GAP_ROOT=/s|$$SAGE_LOCAL|${LOCALBASE}|' \ - ${WRKSRC}/build/pkgs/gap_packages/spkg-install.in - ${REINPLACE_CMD} -e "/os.path.join/s|SAGE_LOCAL|'${LOCALBASE}'|"\ - ${WRKSRC}/src/sage/libs/gap/util.pyx - ${REINPLACE_CMD} -e "/os.path.join(SAGE_LOCAL/s|SAGE_LOCAL|'${LOCALBASE}'|" \ - ${WRKSRC}/src/sage/env.py - ${REINPLACE_CMD} -e "/^library_dirs/s|SAGE_LOCAL|'${LOCALBASE}'|" \ - ${WRKSRC}/src/setup.py -.for f in ${SHR2FIX} - ${REINPLACE_CMD} -e "/${f}/s|SAGE_SHARE|'${LOCALBASE}/share/'|" \ - ${WRKSRC}/src/sage/env.py -.endfor - ${REINPLACE_CMD} -e "/JMOL_DIR/s|SAGE_SHARE|'${JAVASHAREDIR}'|" \ - -e "/JMOL_DIR/s|jmol|classes|" \ - ${WRKSRC}/src/sage/env.py - ${REINPLACE_CMD} -e "/JSMOL_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ - -e "/JSMOL_DIR/s|jsmol|JSmol|" \ - ${WRKSRC}/src/sage/env.py - ${REINPLACE_CMD} -e "/MATHJAX_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ - -e "/MATHJAX_DIR/s|mathjax|MathJax|" \ - ${WRKSRC}/src/sage/env.py - ${REINPLACE_CMD} -e "/THREEJS_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \ - ${WRKSRC}/src/sage/env.py -.for f in ${SE2FIX} - ${REINPLACE_CMD} -e '/${f}/s|$$SAGE_LOCAL|${LOCALBASE}|' \ - ${WRKSRC}/src/bin/sage-env -.endfor - ${REINPLACE_CMD} -e '/LDFLAGS=/s|-rpath,$$SAGE_LOCAL|-rpath,${LOCALBASE}|' \ - ${WRKSRC}/src/bin/sage-env -.for f in ${SPKG_INST} - ${REINPLACE_CMD} -e 's|/var/lib/sage|/share/libdata/${PORTNAME}|' \ - ${WRKSRC}/${f} -.endfor - # Bug with py-docutils > 0.16 - ${RM} -r ${WRKSRC}/src/doc/hu - (cd ${WRKSRC} && ./bootstrap) - ${MKDIR} ${BLDDIR}${PREFIX}/lib/pkgconfig # Removed thereafter - -post-build: -.if ${PORT_OPTIONS:MDOCS} - (cd ${WRKSRC} && ${MAKE_ENV} ${MAKE_CMD} doc) -.endif -.for d in ${PY2FIX} - ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "${WSDIR}/bin/python" {} \; |\ - ${XARGS} ${SED} -i "" -e 's|${WSDIR}/bin/pytho.*|${PYTHON_CMD}|' -.endfor -.for d in ${PY2FIX} - ${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "/usr/bin/env python" {} \; |\ - ${XARGS} ${SED} -i "" -e 's|/usr/bin/env pytho.*|${PYTHON_CMD}|' -.endfor - ${FIND} ${BLDDIR}/${PYTHON_LIBDIR} -type d -name __pycache__ | \ - ${XARGS} ${RM} -r -.for f in ${DOC2FIX} - ${FIND} ${BLDDIR}${DOCSDIR} -type f -name "*${f}" | ${XARGS} \ - ${SED} -i "" -e 's|${BLDDIR}||g' -.endfor -.for f in ${STG2FIX} - ${SED} -i "" -e 's|${BLDDIR}||g' ${BLDDIR}${PREFIX}/${f} -.endfor - ${RM} ${BLDDIR}${PYTHON_CMD} ${BADLN:C|^|${BLDDIR}${PREFIX}/share/jupyter/|} - ${RM} -r ${BLDDIR}${PREFIX}/var - ${RM} ${BLDDIR}${PREFIX}/lib64 ${BLDDIR}${PREFIX}/lib/pkgconfig/blas.pc \ - ${BLDDIR}${PREFIX}/lib/pkgconfig/cblas.pc \ - ${BLDDIR}${PREFIX}/lib/pkgconfig/gsl.pc \ - ${BLDDIR}${PREFIX}/lib/pkgconfig/lapack.pc - # Cannot use a package system for pip and setuptools - ${RM} ${BLDDIR}${PREFIX}/bin/easy_install* ${BLDDIR}${PREFIX}/bin/pip* - ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/pip-* ${BLDDIR}${PYTHON_SITELIBDIR}/pip/ - ${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/setuptools* \ - ${BLDDIR}${PYTHON_SITELIBDIR}/easy_install.py \ - ${BLDDIR}${PYTHON_SITELIBDIR}/pkg_resources \ - ${BLDDIR}${PYTHON_SITELIBDIR}/__pycache__/easy_install* - # Remove CONFLICTS with lang/python3 - ${RM} ${BLDDIR}${PREFIX}/bin/python ${BLDDIR}${PREFIX}/bin/python3 - ${REINPLACE_CMD} -e '/exec/s|python3|${PYTHON_VERSION}|' ${BLDDIR}${PREFIX}/bin/sage - # ${TRUE} because compilation of some .py fails: compileall.py -q to see errors - (cd ${WSDIR} && (${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \ - -d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} || \ - ${TRUE})) - ${FIND} ${BLDDIR}${PREFIX} -name "*.bak" -delete -# See https://lists.freebsd.org/pipermail/freebsd-python/2020-June/020710.html -.if exists(${PYTHON_SITELIBDIR}/path.py-7.1.dist-info/WHEEL) -PLIST_SUB+= EGG="@comment " WHEEL="" -.else -PLIST_SUB+= EGG="" WHEEL="@comment " -.endif - -do-install: - cd "${BLDDIR}" && ${FIND} . | ${CPIO} -pduml ${STAGEDIR} - # Remove bad links - ${LN} -sf ${DOCSDIR} \ - ${STAGEDIR}${PREFIX}/share/jupyter/kernels/sagemath/doc - ${LN} -sf ${LOCALBASE}/www/JSmol \ - ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/jsmol - ${LN} -sf ${LOCALBASE}/www/MathJax \ - ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/mathjax - ${LN} -sf ${LOCALBASE}/www/threejs \ - ${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/threejs - -post-install: - ${RM} ${STAGEDIR}${PREFIX}/lib64 ${STAGEDIR}${PREFIX}/libdata/pkgconfig/blas.pc \ - ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/distutils-precedence.pth \ - ${STAGEDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \ - ${STAGEDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \ - ${STAGEDIR}${PREFIX}/libdata/pkgconfig/lapack.pc - ${RM} -r ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_distutils_hack - -.include <bsd.port.post.mk> diff --git a/math/sage/distinfo b/math/sage/distinfo deleted file mode 100644 index 81a4184af6fe..000000000000 --- a/math/sage/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -TIMESTAMP = 1603652320 -SHA256 (sage-9.2.tar.gz) = 790550d9a5dc416f469773e9284b1080494ae221d6a616a33a9e5345d513baf9 -SIZE (sage-9.2.tar.gz) = 1162140478 diff --git a/math/sage/files/e_antic_spkg-configure.m4 b/math/sage/files/e_antic_spkg-configure.m4 deleted file mode 100644 index 5113faedeed1..000000000000 --- a/math/sage/files/e_antic_spkg-configure.m4 +++ /dev/null @@ -1,8 +0,0 @@ -SAGE_SPKG_CONFIGURE([e_antic], [ - SAGE_SPKG_DEPCHECK([arb gmp flint], [ - AC_CHECK_HEADER([e-antic/e-antic.h], [ - AC_SEARCH_LIBS([renf_init], [eantic], [ - ], [sage_spkg_install_e_antic=yes]) - ], [sage_spkg_install_e_antic=yes]) - ]) -]) diff --git a/math/sage/files/ecl_spkg-configure.m4 b/math/sage/files/ecl_spkg-configure.m4 deleted file mode 100644 index 39c5b862809e..000000000000 --- a/math/sage/files/ecl_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([ecl], [ - AC_PATH_PROG([ECL], [ecl]) - AS_IF([test x$ECL = x], [ - AC_MSG_NOTICE([ecl not found. Installing ecl]) - sage_spkg_install_ecl=yes]) -]) diff --git a/math/sage/files/gap_spkg-configure.m4 b/math/sage/files/gap_spkg-configure.m4 deleted file mode 100644 index 91cd0899d21a..000000000000 --- a/math/sage/files/gap_spkg-configure.m4 +++ /dev/null @@ -1,8 +0,0 @@ -SAGE_SPKG_CONFIGURE([gap], [ - SAGE_SPKG_DEPCHECK([gmp], [ - AC_CHECK_HEADER([gap/system.h], [ - AC_SEARCH_LIBS([GAP_COMM], [gap], [ - ], [sage_spkg_install_gap=yes]) - ], [sage_spkg_install_gap=yes]) - ]) -]) diff --git a/math/sage/files/gc_spkg-configure.m4 b/math/sage/files/gc_spkg-configure.m4 deleted file mode 100644 index 4eda93d63818..000000000000 --- a/math/sage/files/gc_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([gc], [ - SAGE_SPKG_DEPCHECK([libatomic_ops], [ - dnl checking with pkg-config - PKG_CHECK_MODULES([GC], [bdw-gc-threaded >= 7.6.4], [], [sage_spkg_install_gc=yes]) - ]) -]) diff --git a/math/sage/files/jmol_spkg-configure.m4.in b/math/sage/files/jmol_spkg-configure.m4.in deleted file mode 100644 index 44fbb5276aa0..000000000000 --- a/math/sage/files/jmol_spkg-configure.m4.in +++ /dev/null @@ -1,10 +0,0 @@ -SAGE_SPKG_CONFIGURE( - [jmol], [dnl direct testing of file existence - AC_MSG_CHECKING(JSmol installation...) - if [[ -f %%LOCALBASE%%/www/JSmol/JSmol.lite.js ]] ; then - AC_MSG_RESULT(OK) - else - AC_MSG_RESULT(KO) - sage_spkg_install_jmol=yes - fi -]) diff --git a/math/sage/files/libhomfly_spkg-configure.m4 b/math/sage/files/libhomfly_spkg-configure.m4 deleted file mode 100644 index 2f25c92534ea..000000000000 --- a/math/sage/files/libhomfly_spkg-configure.m4 +++ /dev/null @@ -1,8 +0,0 @@ -SAGE_SPKG_CONFIGURE([libhomfly], [ - SAGE_SPKG_DEPCHECK([gc], [ - AC_CHECK_HEADER([homfly.h], [ - AC_SEARCH_LIBS([homfly], [homfly], [ - ], [sage_spkg_install_libhomfly=yes]) - ], [sage_spkg_install_libhomfly=yes]) - ]) -]) diff --git a/math/sage/files/linbox_spkg-configure.m4 b/math/sage/files/linbox_spkg-configure.m4 deleted file mode 100644 index 58e5db0b7802..000000000000 --- a/math/sage/files/linbox_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([linbox], [ - SAGE_SPKG_DEPCHECK([gmp givaro fflas-ffpack], [ - dnl checking with pkg-config - PKG_CHECK_MODULES([LINBOX], [linbox >= 1.6.3], [], [sage_spkg_install_linbox=yes]) - ]) -]) diff --git a/math/sage/files/mathjax_spkg-configure.m4.in b/math/sage/files/mathjax_spkg-configure.m4.in deleted file mode 100644 index 5f733efb7dfc..000000000000 --- a/math/sage/files/mathjax_spkg-configure.m4.in +++ /dev/null @@ -1,10 +0,0 @@ -SAGE_SPKG_CONFIGURE( - [mathjax], [dnl direct testing of file existence - AC_MSG_CHECKING(MathJax installation...) - if [[ -f %%LOCALBASE%%/www/MathJax/MathJax.js ]] ; then - AC_MSG_RESULT(OK) - else - AC_MSG_RESULT(KO) - sage_spkg_install_mathjax=yes - fi -]) diff --git a/math/sage/files/maxima_spkg-configure.m4 b/math/sage/files/maxima_spkg-configure.m4 deleted file mode 100644 index 26ebc1f01f28..000000000000 --- a/math/sage/files/maxima_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([maxima], [ - AC_PATH_PROG([MAXIMA], [maxima]) - AS_IF([test x$MAXIMA = x], [ - AC_MSG_NOTICE([maxima not found. Installing maxima]) - sage_spkg_install_maxima=yes]) -]) diff --git a/math/sage/files/patch-bootstrap b/math/sage/files/patch-bootstrap deleted file mode 100644 index 1b28a370bffc..000000000000 --- a/math/sage/files/patch-bootstrap +++ /dev/null @@ -1,13 +0,0 @@ ---- bootstrap.orig 2020-10-02 09:05:18 UTC -+++ bootstrap -@@ -116,7 +116,9 @@ SAGE_SPKG_CONFIGURE_$(echo ${pkgname} | tr '[a-z]' '[A - BOOTSTRAP_QUIET="${BOOTSTRAP_QUIET}" \ - SAGE_ROOT="$SAGE_ROOT" \ - src/doc/bootstrap && \ -- install_config_rpath && \ -+ install_config_rpath -+ exit -+ # Continue with FreeBSD autoreconf - aclocal -I m4 && \ - automake --add-missing --copy build/make/Makefile-auto 3>&1 1>&2 2>&3 \ - | sed "${QUIET_SED_FILTER}" 3>&1 1>&2 2>&3 && \ diff --git a/math/sage/files/patch-build_bin_sage-apply-patches b/math/sage/files/patch-build_bin_sage-apply-patches deleted file mode 100644 index 1b470552c77a..000000000000 --- a/math/sage/files/patch-build_bin_sage-apply-patches +++ /dev/null @@ -1,11 +0,0 @@ ---- build/bin/sage-apply-patches.orig 2020-01-01 11:03:10 UTC -+++ build/bin/sage-apply-patches -@@ -67,7 +67,7 @@ if [[ -r "${patches[0]}" ]]; then - # Skip non-existing or non-readable patches - [ -r "$patch" ] || continue - echo "Applying $patch" -- patch $patch_strip $patch_args < "$patch" -+ gpatch $patch_strip $patch_args < "$patch" - if [ $? -ne 0 ]; then - echo >&2 "Error applying '$patch'" - exit 1 diff --git a/math/sage/files/patch-build_make_install b/math/sage/files/patch-build_make_install deleted file mode 100644 index fcbd87b411de..000000000000 --- a/math/sage/files/patch-build_make_install +++ /dev/null @@ -1,13 +0,0 @@ ---- build/make/install.orig 2020-10-27 19:12:31 UTC -+++ build/make/install -@@ -31,7 +31,9 @@ if [ -z "${SAGE_ORIG_PATH_SET}" ]; then - fi - export PATH="$SAGE_ROOT/build/bin:$SAGE_SRC/bin:$SAGE_LOCAL/bin:$PATH" - --export PYTHONPATH="$SAGE_LOCAL" -+PYTHON_SITELIBDIR=`$PYTHON_FOR_VENV -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])'` -+REL_PYTHON_SITELIBDIR=`echo $PYTHON_SITELIBDIR | sed -e "s|$PYTHONBASE||"` -+export PYTHONPATH="$SAGE_LOCAL:$SAGE_LOCAL$REL_PYTHON_SITELIBDIR:$PYTHON_SITELIBDIR" - - ############################################################################### - # Skip the rest if nothing to do (i.e., to [re]build). diff --git a/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 deleted file mode 100644 index 2d42a2d019bd..000000000000 --- a/math/sage/files/patch-build_pkgs_cddlib_spkg-configure.m4 +++ /dev/null @@ -1,23 +0,0 @@ ---- build/pkgs/cddlib/spkg-configure.m4.orig 2020-04-27 18:08:24 UTC -+++ build/pkgs/cddlib/spkg-configure.m4 -@@ -24,13 +24,13 @@ SAGE_SPKG_CONFIGURE([cddlib], [ - dnl check, passing up a chance to detect cddlib on Fedora and Debian - dnl for now. Once all of cddlib's consumers know about the new (or - dnl both) locations, we can update this check to support them. -- AC_CHECK_HEADER([cdd.h],[],[sage_spkg_install_cddlib=yes],[ -- #include <setoper.h> -- #include <cddmp.h> -+ AC_CHECK_HEADER([cdd/cdd.h],[ -+ dnl Both lattE and gfan try to link against libcddgmp (as -+ dnl opposed to libcdd). -+ AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes]) -+ ],[sage_spkg_install_cddlib=yes],[ -+ #include <cdd/setoper.h> -+ #include <cdd/cddmp.h> - ]) -- -- dnl Both lattE and gfan try to link against libcddgmp (as -- dnl opposed to libcdd). -- AC_SEARCH_LIBS([dd_abs],[cddgmp],[],[sage_spkg_install_cddlib=yes]) - ]) - ]) diff --git a/math/sage/files/patch-build_pkgs_giac_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_giac_spkg-configure.m4 deleted file mode 100644 index cb99e98f4b1e..000000000000 --- a/math/sage/files/patch-build_pkgs_giac_spkg-configure.m4 +++ /dev/null @@ -1,30 +0,0 @@ ---- build/pkgs/giac/spkg-configure.m4.orig 2021-03-16 21:40:45 UTC -+++ build/pkgs/giac/spkg-configure.m4 -@@ -1,26 +1,8 @@ - SAGE_SPKG_CONFIGURE([giac], [ -- SAGE_SPKG_DEPCHECK([pari], [ -- dnl giac does not seem to reveal its patchlevel -- m4_pushdef([GIAC_MIN_VERSION], [1.5.0]) -- m4_pushdef([GIAC_MAX_VERSION], [1.5.999]) -- AC_CACHE_CHECK([for giac >= ]GIAC_MIN_VERSION[, <= ]GIAC_MAX_VERSION, [ac_cv_path_GIAC], [ -- AC_PATH_PROGS_FEATURE_CHECK([GIAC], [giac], [ -- giac_version=$($ac_path_GIAC --version 2> /dev/null | tail -1) -- AS_IF([test -n "$giac_version"], [ -- AX_COMPARE_VERSION([$giac_version], [ge], GIAC_MIN_VERSION, [ -- AX_COMPARE_VERSION([$giac_version], [le], GIAC_MAX_VERSION, [ -- ac_cv_path_GIAC="$ac_path_GIAC" -- ]) -- ]) -- ]) -- ]) -- ]) -- AS_IF([test -z "$ac_cv_path_GIAC"], -- [sage_spkg_install_giac=yes]) -+ SAGE_SPKG_DEPCHECK([glpk pari], [ - AC_CHECK_HEADER([giac/giac.h], [ - AC_SEARCH_LIBS([ConvertUTF16toUTF8], [giac], [ - ], [sage_spkg_install_giac=yes]) - ], [sage_spkg_install_giac=yes]) -- m4_popdef([GIAC_MIN_VERSION]) - ]) - ]) diff --git a/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 deleted file mode 100644 index 9bb727698838..000000000000 --- a/math/sage/files/patch-build_pkgs_gsl_spkg-configure.m4 +++ /dev/null @@ -1,18 +0,0 @@ ---- build/pkgs/gsl/spkg-configure.m4.orig 2020-05-27 14:11:57 UTC -+++ build/pkgs/gsl/spkg-configure.m4 -@@ -2,15 +2,6 @@ SAGE_SPKG_CONFIGURE([gsl], [ - m4_pushdef([SAGE_GSL_MINVER],["2.4"]) - SAGE_SPKG_DEPCHECK([atlas openblas], [ - PKG_CHECK_MODULES([GSL], [gsl >= $SAGE_GSL_MINVER], [ -- PKG_CHECK_VAR([GSLPCDIR], [gsl], [pcfiledir], [ -- GSL_PC="$GSLPCDIR"/gsl.pc -- AC_SUBST([SAGE_SYSTEM_FACADE_PC_FILES]) -- AS_VAR_APPEND([SAGE_SYSTEM_FACADE_PC_FILES], [" \$(SAGE_PKGCONFIG)/gsl.pc"]) -- AC_SUBST([SAGE_GSL_PC_COMMAND],["\$(SED) -e 's/\$\${GSL_CBLAS_LIB}//' -e \"s/^GSL_CBLAS_LIB=.*/Requires: cblas/\" \"$GSL_PC\" > \"\$(@)\""]) -- ], [ -- AC_MSG_WARN([Unable to locate the directory of gsl.pc. This should not happen!]) -- sage_spkg_install_gsl=yes -- ]) - ], [sage_spkg_install_gsl=yes]) - ]) - m4_popdef([SAGE_GSL_MINVER]) diff --git a/math/sage/files/patch-build_pkgs_libnauty_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_libnauty_spkg-configure.m4 deleted file mode 100644 index f4feea1c76ea..000000000000 --- a/math/sage/files/patch-build_pkgs_libnauty_spkg-configure.m4 +++ /dev/null @@ -1,10 +0,0 @@ ---- build/pkgs/libnauty/spkg-configure.m4.orig 2020-10-02 15:26:33 UTC -+++ build/pkgs/libnauty/spkg-configure.m4 -@@ -2,6 +2,6 @@ SAGE_SPKG_CONFIGURE([libnauty], [ - SAGE_SPKG_DEPCHECK([nauty], [ - dnl The library is actually installed by the nauty spkg. - AC_CHECK_HEADER([nauty/nauty.h], [], [sage_spkg_install_libnauty=yes]) -- AC_SEARCH_LIBS([nauty], [densenauty], [], [sage_spkg_install_libnauty=yes]) -+ AC_SEARCH_LIBS([densenauty], [nauty], [], [sage_spkg_install_libnauty=yes]) - ]) - ]) diff --git a/math/sage/files/patch-build_pkgs_pari_spkg-configure.m4 b/math/sage/files/patch-build_pkgs_pari_spkg-configure.m4 deleted file mode 100644 index 5ca504a22bdf..000000000000 --- a/math/sage/files/patch-build_pkgs_pari_spkg-configure.m4 +++ /dev/null @@ -1,20 +0,0 @@ ---- build/pkgs/pari/spkg-configure.m4.orig 2020-10-27 19:12:31 UTC -+++ build/pkgs/pari/spkg-configure.m4 -@@ -77,17 +77,6 @@ SAGE_SPKG_CONFIGURE([pari], [ - AC_MSG_NOTICE([Otherwise Sage will build its own pari/GP.]) - sage_spkg_install_pari=yes - fi -- AC_MSG_CHECKING([whether bnfisunit bug of pari 2.11.3 is fixed]) -- bug_check=`echo "bnf = bnfinit(y^4-y-1); bnfisunit(bnf,-y^3+2*y^2-1)" | $GP -qf 2>> config.log` -- expected="[[0, 2, Mod(0, 2)]]~" -- if test x"$bug_check" = x"$expected"; then -- AC_MSG_RESULT([yes]) -- else -- AC_MSG_RESULT([no; cannot use system pari/GP with known bug]) -- AC_MSG_NOTICE([Upgrade your system package and reconfigure.]) -- AC_MSG_NOTICE([Otherwise Sage will build its own pari/GP.]) -- sage_spkg_install_pari=yes -- fi - AC_MSG_CHECKING([whether qfisom bug of pari 2.11.2 is fixed]) - bug_check=`echo "qfisom([[16,6;6,10]],[[4,3;3,10]])" | $GP -qf 2>> config.log` - expected="0" diff --git a/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch b/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch deleted file mode 100644 index 8bd1bccd2f0d..000000000000 --- a/math/sage/files/patch-build_pkgs_tachyon_patches_Make-arch.patch +++ /dev/null @@ -1,542 +0,0 @@ ---- build/pkgs/tachyon/patches/Make-arch.patch.orig 2020-01-01 11:03:10 UTC -+++ build/pkgs/tachyon/patches/Make-arch.patch -@@ -10,7 +10,15 @@ - - # MPI path setup, probably shouldn't need to be changed. - MPIINC=$(MPIDIR)/include --@@ -23,7 +24,8 @@ default: -+@@ -16,14 +17,15 @@ -+ MISCDEFS=$(USEJPEG) $(USEPNG) $(FLT) $(MBOX) -+ MISCINC=$(JPEGINC) $(PNGINC) $(SPACEBALLINC) -+ MISCFLAGS=$(MISCDEFS) $(MISCINC) -+-MISCLIB=$(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB) -++MISCLIB=%%LDFLAGS%% $(JPEGLIB) $(PNGLIB) $(SPACEBALLLIB) -+ -+ default: -+ @echo " Choose one of the architectures specified below." - @echo "--------------------------------------------------------------" - @echo " Parallel Versions " - @echo "" -@@ -20,7 +28,7 @@ - @echo " aix-64-thr - IBM AIX 5.x POSIX Threads, 64-bit " - @echo " aix-mpi - IBM AIX 5.x (SP) MPI " - @echo " asci-red-mpi - Intel ASCI Red MPI " --@@ -32,11 +34,12 @@ default: -+@@ -32,11 +34,12 @@ - @echo " cray-t3e-mpi - Cray T3E MPI " - @echo " cray-xt3-mpi - Cray XT3 MPI " - @echo " compaq-alphasc-mpi - Lemieux at PSC MPI " -@@ -34,7 +42,7 @@ - @echo " linux-alpha-ccc-qsw - Linux Alpha, Compaq C, MPI, QSWnet " - @echo " linux-lam - Linux MPI (OSC LAM) " - @echo " linux-lam-64 - Linux AMD64/EM64T, MPI, 64-bit " --@@ -48,13 +51,14 @@ default: -+@@ -48,13 +51,14 @@ - @echo "linux-ia64-thr-sgicc - Linux IA-64, SGI Pro64 Compilers " - @echo " macosx-thr - MacOS X PowerPC, POSIX Threads " - @echo " macosx-x86-thr - MacOS X Intel x86, POSIX Threads " -@@ -56,7 +64,7 @@ - @echo "--------------------------------------------------------------" - @echo " Hybrid Parallel Versions " - @echo "" --@@ -63,9 +67,11 @@ default: -+@@ -63,9 +67,11 @@ - @echo "--------------------------------------------------------------" - @echo " Sequential Versions " - @echo "" -@@ -70,7 +78,7 @@ - @echo " irix6 - SGI Irix 6.x " - @echo " linux - Linux " - @echo " linux-64 - Linux, AMD64/EM64T, GCC 3.x, 64-bit " --@@ -102,7 +108,7 @@ default: -+@@ -102,7 +108,7 @@ - @echo "Consult the README file in this directory for further info. " - - ## -@@ -79,7 +87,7 @@ - ## No pthreads on ASCI Red yet. I didn't bother with the cop() stuff - ## - asci-red-mpi: --@@ -118,7 +124,7 @@ asci-red-mpi: -+@@ -118,7 +124,7 @@ - - ## - ## IBM Blue Gene/L Parallel Supercomputer -@@ -88,7 +96,7 @@ - ## NOTE: strip breaks bluegene executables, they are dynamically re-linked - ## at runtime, so we must use /bin/true rather than strip - ## --@@ -137,7 +143,7 @@ bluegene-mpi: -+@@ -137,7 +143,7 @@ - ## Cray Parallel Vector Processor Machines Using Threads - ## - ## Tested on J90s, but should work on almost any of the Cray PVP systems. -@@ -97,7 +105,7 @@ - ## off running on a fast workstation, or even better, on a T3E!!! - ## - cray-thr: --@@ -228,7 +234,7 @@ cray-xt3-mpi: -+@@ -228,7 +234,7 @@ - ## - ## Architecture flags for the Intel Paragon XP/S Supercomputer using MPI - ## for message passing. NX is no longer supported by this software. -@@ -106,7 +114,7 @@ - ## Concurrent I/O is used by default. - ## - --@@ -264,8 +270,8 @@ paragon-mpi: -+@@ -264,8 +270,8 @@ - - - ## -@@ -117,7 +125,7 @@ - ## Tested with the mpich distribution from Argonne National Labs - ## - --@@ -277,7 +283,7 @@ ipsc860-mpi: -+@@ -277,7 +283,7 @@ - "AR = ar860" \ - "ARFLAGS = r" \ - "STRIP = strip860" \ -@@ -126,7 +134,7 @@ - - ipsc860-mpi-debug: - $(MAKE) all \ --@@ -287,7 +293,7 @@ ipsc860-mpi-debug: -+@@ -287,7 +293,7 @@ - "AR = ar860" \ - "ARFLAGS = r" \ - "STRIP = touch " \ -@@ -135,7 +143,7 @@ - - - ## --@@ -296,22 +302,18 @@ ipsc860-mpi-debug: -+@@ -296,22 +302,18 @@ - tru64-alpha: - $(MAKE) all \ - "ARCH = tru64-alpha" \ -@@ -159,7 +167,7 @@ - "ARFLAGS = r" \ - "STRIP = strip" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" --@@ -319,9 +321,7 @@ tru64-alpha-thr: -+@@ -319,9 +321,7 @@ - tru64-alpha-thr-ogl: - $(MAKE) all \ - "ARCH = tru64-alpha-thr-ogl" \ -@@ -169,7 +177,7 @@ - "ARFLAGS = r" \ - "STRIP = strip" \ - "LIBS = -L. -ltachyon $(TRU64_GLX_LIBS) $(MISCLIB) -lm" --@@ -448,7 +448,7 @@ solaris-ultra-hpc: -+@@ -448,7 +448,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -178,7 +186,7 @@ - - solaris-mpi: - $(MAKE) all \ --@@ -458,7 +458,7 @@ solaris-mpi: -+@@ -458,7 +458,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -187,25 +195,29 @@ - - solaris-thr: - $(MAKE) all \ --@@ -473,9 +473,15 @@ solaris-thr: -+@@ -473,13 +473,19 @@ - solaris-pthreads-gcc: - $(MAKE) all \ - "ARCH = solaris-pthreads-gcc" \ - - "CC = gcc" \ - "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \ - - "AR = ar" \ --+ "ARFLAGS = r" \ --+ "STRIP = strip" \ --+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" --+ -+ "ARFLAGS = r" \ -+ "STRIP = strip" \ -+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" -+ - +solaris-pthreads-gcc-64-bit: - + $(MAKE) all \ - + "ARCH = solaris-pthreads-gcc" \ - + "CFLAGS = -Wall -O4 -m64 -fomit-frame-pointer -ffast-math -D_REENTRANT -DSunOS $(MISCFLAGS) -DTHR -DUSEPOSIXTHREADS" \ -- "ARFLAGS = r" \ -- "STRIP = strip" \ -- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" --@@ -618,7 +624,7 @@ solaris-ultra-hpc-ogl: -++ "ARFLAGS = r" \ -++ "STRIP = strip" \ -++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" -++ -+ solaris-thr-x11: -+ $(MAKE) all \ -+ "ARCH = solaris-thr-x11" \ -+@@ -618,7 +624,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -214,7 +226,7 @@ - - solaris-ultra-pthreads-ogl: - $(MAKE) all \ --@@ -643,9 +649,7 @@ solaris-apcc-ultra-thr: -+@@ -643,9 +649,7 @@ - solaris-gcc-thr: - $(MAKE) all \ - "ARCH = solaris-gcc-thr" \ -@@ -224,7 +236,7 @@ - "ARFLAGS = r" \ - "STRIP = touch" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket -lthread" --@@ -653,9 +657,7 @@ solaris-gcc-thr: -+@@ -653,9 +657,7 @@ - solaris-gcc-thr-x11: - $(MAKE) all \ - "ARCH = solaris-gcc-thr-x11" \ -@@ -234,7 +246,7 @@ - "ARFLAGS = r" \ - "STRIP = touch" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lsocket $(X11LIB) -lthread" --@@ -701,7 +703,7 @@ irix5-mpi: -+@@ -701,7 +703,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -243,7 +255,7 @@ - - irix5: - $(MAKE) all \ --@@ -710,7 +712,7 @@ irix5: -+@@ -710,7 +712,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -252,7 +264,7 @@ - - irix6: - $(MAKE) all \ --@@ -719,7 +721,7 @@ irix6: -+@@ -719,7 +721,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -261,7 +273,7 @@ - - irix6-purify: - $(MAKE) all \ --@@ -738,7 +740,7 @@ irix6-64-thr: -+@@ -738,7 +740,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -270,7 +282,7 @@ - - irix6-thr: - $(MAKE) all \ --@@ -747,7 +749,7 @@ irix6-thr: -+@@ -747,7 +749,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -279,7 +291,7 @@ - - irix6-thr-purify: - $(MAKE) all \ --@@ -766,7 +768,7 @@ irix6-thr-ogl: -+@@ -766,7 +768,7 @@ - "AR = ar" \ - "ARFLAGS = r" \ - "STRIP = strip" \ -@@ -288,7 +300,7 @@ - - - ## --@@ -776,6 +778,8 @@ irix6-thr-ogl: -+@@ -776,6 +778,8 @@ - ## available yet, since access to a thread capable test machine is needed - ## for implementation. These configurations require xlc. - ## -@@ -297,7 +309,7 @@ - - - aix: --@@ -788,6 +792,19 @@ aix: -+@@ -788,6 +792,19 @@ - "STRIP = strip" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - -@@ -317,7 +329,7 @@ - aix-mpi: - $(MAKE) all \ - "ARCH = aix-mpi" \ --@@ -808,6 +825,19 @@ aix-thr: -+@@ -808,6 +825,19 @@ - "STRIP = strip" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" - -@@ -337,7 +349,7 @@ - aix-64-thr: - $(MAKE) all \ - "ARCH = aix-64-thr" \ --@@ -836,6 +866,32 @@ hpux: -+@@ -836,6 +866,32 @@ - "STRIP = strip" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - -@@ -370,7 +382,7 @@ - hpux-thr: - $(MAKE) all \ - "ARCH = hpux-thr" \ --@@ -867,67 +923,57 @@ hpux-ia64-thr: -+@@ -867,67 +923,57 @@ - next: - $(MAKE) all \ - "ARCH = next" \ -@@ -391,16 +403,16 @@ - "ARFLAGS = r" \ - "STRIP = strip" \ - - "RANLIB = ranlib" \ --+ "LIBS = -L. -ltachyon $(MISCLIB)" --+ -+ "LIBS = -L. -ltachyon $(MISCLIB)" -+ - +macosx-64: - + $(MAKE) all \ - + "ARCH = macosx" \ - + "CFLAGS = -Os -m64 -ffast-math -DBsd $(MISCFLAGS)" \ - + "ARFLAGS = r" \ - + "STRIP = strip" \ -- "LIBS = -L. -ltachyon $(MISCLIB)" -- -++ "LIBS = -L. -ltachyon $(MISCLIB)" -++ - macosx-thr: - $(MAKE) all \ - "ARCH = macosx-thr" \ -@@ -446,7 +458,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lpthread -L/usr/X11R6/lib -lGLU -lGL -lX11 -framework Carbon" - - --@@ -938,12 +984,9 @@ macosx-x86-thr-ogl: -+@@ -938,12 +984,9 @@ - beos: - $(MAKE) all \ - "ARCH = beos" \ -@@ -459,13 +471,14 @@ - "LIBS = -L. -ltachyon $(MISCLIB)" - - ## --@@ -954,23 +997,17 @@ beos: -+@@ -954,23 +997,17 @@ - bsd: - $(MAKE) all \ - "ARCH = bsd" \ - - "CC = gcc" \ -- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ -+- "CFLAGS = -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ - - "AR = ar" \ -++ "CFLAGS = %%CFLAGS%% -DBsd $(MISCFLAGS)" \ - "ARFLAGS = r" \ - "STRIP = strip" \ - - "RANLIB = ranlib" \ -@@ -475,15 +488,16 @@ - $(MAKE) all \ - "ARCH = bsd-sparc" \ - - "CC = gcc" \ -- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ -+- "CFLAGS = -mv8 -msupersparc -O3 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ - - "AR = ar" \ -++ "CFLAGS = -mv8 -msupersparc %%CFLAGS%% -DBsd $(MISCFLAGS)" \ - "ARFLAGS = r" \ - "STRIP = strip" \ - - "RANLIB = ranlib" \ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - - ## --@@ -980,23 +1017,17 @@ bsd-sparc: -+@@ -980,23 +1017,17 @@ - win32: - $(MAKE) all \ - "ARCH = win32" \ -@@ -509,7 +523,7 @@ - "LIBS = -L. -L'/Program files/MPIPro/LIB' -ltachyon -lmpi $(MISCLIB) -lm" - - ## --@@ -1007,60 +1038,45 @@ win32-mpi: -+@@ -1007,60 +1038,45 @@ - linux: - $(MAKE) all \ - "ARCH = linux" \ -@@ -570,7 +584,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - - --@@ -1068,12 +1084,9 @@ linux-64-debug: -+@@ -1068,12 +1084,9 @@ - linux-64-thr: - $(MAKE) all \ - "ARCH = linux-64-thr" \ -@@ -583,7 +597,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" - - --@@ -1081,17 +1094,14 @@ linux-64-thr: -+@@ -1081,17 +1094,14 @@ - linux-p4: - $(MAKE) all \ - "ARCH = linux-p4" \ -@@ -603,7 +617,7 @@ - linux-p4-icc: - $(MAKE) all \ - "ARCH = linux-p4-icc" \ --@@ -1119,23 +1129,17 @@ linux-p4-icc-thr: -+@@ -1119,23 +1129,17 @@ - linux-athlon: - $(MAKE) all \ - "ARCH = linux-athlon" \ -@@ -627,7 +641,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" - - --@@ -1167,21 +1171,25 @@ linux-athlon-pgcc: -+@@ -1167,21 +1171,25 @@ - linux-thr: - $(MAKE) all \ - "ARCH = linux-thr" \ -@@ -637,8 +651,8 @@ - "ARFLAGS = r" \ - "STRIP = strip" \ - - "RANLIB = ranlib" \ --+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" --+ -+ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" -+ - +# Linux Arm using gcc, with threads - +linux-arm-thr: - + $(MAKE) all \ -@@ -646,8 +660,8 @@ - + "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -DLinux -DTHR -D_REENTRANT $(MISCFLAGS)" \ - + "ARFLAGS = r" \ - + "STRIP = strip" \ -- "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" -- -++ "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" -++ - # Linux x86 using gcc, threads, and OpenGL - linux-thr-ogl: - $(MAKE) all \ -@@ -658,7 +672,7 @@ - "ARFLAGS = r" \ - "STRIP = touch" \ - "LIBS = -L. -ltachyon $(MISCLIB) $(LINUX_GLX_LIBS) $(MISCLIB) -lm -lpthread" --@@ -1190,24 +1198,18 @@ linux-thr-ogl: -+@@ -1190,24 +1198,18 @@ - linux-beowulf-mpi-ogl: - $(MAKE) all \ - "ARCH = linux-beowulf-mpi" \ -@@ -683,7 +697,7 @@ - "LIBS = -L. -ltachyon -lmpi $(MISCLIB) -lm" - - # Linux x86 using LAM MPI --@@ -1239,10 +1241,8 @@ linux-mpi: -+@@ -1239,10 +1241,8 @@ - "ARCH = linux-mpi" \ - "CC = mpicc" \ - "CFLAGS = -DLinux -DMPI $(MISCFLAGS)" \ -@@ -694,7 +708,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - - linux-mpi-thr: --@@ -1250,10 +1250,8 @@ linux-mpi-thr: -+@@ -1250,10 +1250,8 @@ - "ARCH = linux-mpi-thr" \ - "CC = mpicc" \ - "CFLAGS = -DLinux -DMPI -DTHR $(MISCFLAGS)" \ -@@ -705,7 +719,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" - - linux-mpi-64: --@@ -1261,10 +1259,8 @@ linux-mpi-64: -+@@ -1261,10 +1259,8 @@ - "ARCH = linux-mpi-64" \ - "CC = mpicc" \ - "CFLAGS = -Wall -O3 -fomit-frame-pointer -ffast-math -I$(LAMHOME)/h -DLinux -DMPI -DLP64 $(MISCFLAGS)" \ -@@ -716,7 +730,7 @@ - "LIBS = -L. -L$(LAMHOME)/lib -ltachyon $(MISCLIB) -lm" - - --@@ -1297,48 +1293,36 @@ linux-lam-thr: -+@@ -1297,48 +1293,36 @@ - linux-ipaq: - $(MAKE) all \ - "ARCH = linux-ipaq" \ -@@ -768,7 +782,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - - # Linux Alpha using Compaq's compilers --@@ -1369,12 +1353,9 @@ linux-alpha-ccc-qsw: -+@@ -1369,12 +1353,9 @@ - linux-ia64: - $(MAKE) all \ - "ARCH = linux-ia64" \ -@@ -782,7 +796,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm" - - # Linux IA-64 using SGI compilers (Merced, Itanium, McKinley, etc) --@@ -1393,12 +1374,9 @@ linux-ia64-sgicc: -+@@ -1393,12 +1374,9 @@ - linux-ia64-thr: - $(MAKE) all \ - "ARCH = linux-ia64-thr" \ -@@ -796,7 +810,7 @@ - "LIBS = -L. -ltachyon $(MISCLIB) -lm -lpthread" - - # Linux IA-64 using SGI compilers and threads (Merced, Itanium, McKinley, etc) --@@ -1421,9 +1399,7 @@ linux-ia64-thr-sgicc: -+@@ -1421,9 +1399,7 @@ - sgi-altix-mpi: - $(MAKE) all \ - "ARCH = sgi-altix-mpi" \ -@@ -806,7 +820,7 @@ - "ARFLAGS = r" \ - "STRIP = strip" \ - "LIBS = -ltachyon -lmpi $(MISCLIB) -lm " --@@ -1432,7 +1408,7 @@ sgi-altix-mpi: -+@@ -1432,7 +1408,7 @@ - ## CSPI PowerPC Based Multicomputers Running VXWORKS - ## This configuration works for the machine at MPI Software Technologies - ## Uses MSTI MPI/Pro for message passing. -@@ -815,7 +829,7 @@ - cspi-ppc-mpi: - $(MAKE) all \ - "ARCH = cspi-ppc-mpi" \ --@@ -1448,7 +1424,7 @@ cspi-ppc-mpi: -+@@ -1448,7 +1424,7 @@ - ## Mercury PowerPC Based Multicomputers Running MCOS - ## This configuration works for the machine at MPI Software Technologies - ## Uses MSTI MPI/Pro for message passing. -@@ -824,7 +838,7 @@ - mercury-ppc-mpi: - $(MAKE) all \ - "ARCH = mercury-ppc-mpi" \ --@@ -1469,7 +1445,7 @@ mercury-ppc-mpi-rtvi: -+@@ -1469,7 +1445,7 @@ - "ARFLAGS = -r" \ - "STRIP = /bin/touch" \ - "LIBS = -L. -L/opt/MPIPro/lib ../compile/mercury-ppc-mpi-rtvi/libmgf.a ../compile/mercury-ppc-mpi-rtvi/libray.a $(RTVILIB) -lmpi.appc" -@@ -833,7 +847,7 @@ - @echo " Also, copy your machines file into your CWD." - - ## --@@ -1490,7 +1466,7 @@ mercury-i860-rtvi: -+@@ -1490,7 +1466,7 @@ - ## Mercury i860 Based Multicomputers Running MCOS - ## This configuration works for the machine at MPI Software Technologies - ## Uses MSTI MPI/Pro for message passing. diff --git a/math/sage/files/patch-src_bin_sage-env b/math/sage/files/patch-src_bin_sage-env deleted file mode 100644 index 1702a4496c8a..000000000000 --- a/math/sage/files/patch-src_bin_sage-env +++ /dev/null @@ -1,29 +0,0 @@ ---- src/bin/sage-env.orig 2020-10-28 20:36:07 UTC -+++ src/bin/sage-env -@@ -454,16 +454,16 @@ unset R_HOME - unset R_PROFILE - # Do not use the global Makevars.site and ~/.R/Makevars when installing R packages - # Provide empty files to appease some R packages' installation scripts. --if [ -d "$SAGE_LOCAL/lib/R/share" ] ; then -- R_MAKEVARS_SITE="$SAGE_LOCAL/lib/R/share/Makevars.site" && export R_MAKEVARS_SITE -- if ! [ -f "$R_MAKEVARS_SITE" ] ; then -- if ! [ -e "$R_MAKEVARS_SITE" ] ; then -- echo "## Empty site-wide Makevars file for Sage's R" > "$R_MAKEVARS_SITE" -- else -- >&2 echo "Warning: $R_MAKEVARS_SITE exists and is not a file : trouble ahead..." -- fi -- fi --fi -+#if [ -d "$SAGE_LOCAL/lib/R/share" ] ; then -+# R_MAKEVARS_SITE="$SAGE_LOCAL/lib/R/share/Makevars.site" && export R_MAKEVARS_SITE -+# if ! [ -f "$R_MAKEVARS_SITE" ] ; then -+# if ! [ -e "$R_MAKEVARS_SITE" ] ; then -+# echo "## Empty site-wide Makevars file for Sage's R" > "$R_MAKEVARS_SITE" -+# else -+# >&2 echo "Warning: $R_MAKEVARS_SITE exists and is not a file : trouble ahead..." -+# fi -+# fi -+#fi - if [ -d "$DOT_SAGE" ] ; then - if ! [ -d "$DOT_SAGE/R" ] ; then - if ! [ -e "$DOT_SAGE/R" ] ; then diff --git a/math/sage/files/patch-src_sage_libs_eclib_____init____.pxd b/math/sage/files/patch-src_sage_libs_eclib_____init____.pxd deleted file mode 100644 index 0fec7993c35a..000000000000 --- a/math/sage/files/patch-src_sage_libs_eclib_____init____.pxd +++ /dev/null @@ -1,17 +0,0 @@ ---- src/sage/libs/eclib/__init__.pxd.orig 2021-03-16 21:40:43 UTC -+++ src/sage/libs/eclib/__init__.pxd -@@ -8,9 +8,11 @@ from libcpp.pair cimport pair - from sage.libs.ntl.types cimport ZZ_c - - --# NOTE: eclib includes have specific dependencies and must be included --# in a specific order. So we start by listing all relevant include files --# in the correct order. -+# NOTE: eclib used to have specific dependencies, so that they had to -+# be included in a specific order. Although this is no longer the -+# case, we start by listing all relevant include files in the correct -+# order. -+ - cdef extern from "eclib/vector.h": pass - cdef extern from "eclib/xmod.h": pass - cdef extern from "eclib/svector.h": pass diff --git a/math/sage/files/patch-src_sage_libs_eclib_interface.py b/math/sage/files/patch-src_sage_libs_eclib_interface.py deleted file mode 100644 index d5391d53fc26..000000000000 --- a/math/sage/files/patch-src_sage_libs_eclib_interface.py +++ /dev/null @@ -1,699 +0,0 @@ ---- src/sage/libs/eclib/interface.py.orig 2021-03-16 21:40:43 UTC -+++ src/sage/libs/eclib/interface.py -@@ -21,18 +21,17 @@ Check that ``eclib`` is imported as needed:: - sage: [k for k in sys.modules if k.startswith("sage.libs.eclib")] - [] - sage: EllipticCurve('11a1').mwrank_curve() -- y^2+ y = x^3 - x^2 - 10*x - 20 -+ y^2 + y = x^3 - x^2 - 10 x - 20 - sage: [k for k in sys.modules if k.startswith("sage.libs.eclib")] - ['...'] - """ -- -+import sys - from sage.structure.sage_object import SageObject - from sage.rings.all import Integer - from sage.rings.integer_ring import IntegerRing - --from .mwrank import _Curvedata, _two_descent, _mw -+from .mwrank import _Curvedata, _two_descent, _mw, parse_point_list - -- - class mwrank_EllipticCurve(SageObject): - r""" - The :class:`mwrank_EllipticCurve` class represents an elliptic -@@ -67,7 +66,7 @@ class mwrank_EllipticCurve(SageObject): - - sage: e = mwrank_EllipticCurve([3, -4]) - sage: e -- y^2 = x^3 + 3*x - 4 -+ y^2 = x^3 + 3 x - 4 - sage: e.ainvs() - [0, 0, 0, 3, -4] - -@@ -127,6 +126,7 @@ class mwrank_EllipticCurve(SageObject): - - # place holders - self.__saturate = -2 # not yet saturated -+ self.__descent = None - - def __reduce__(self): - r""" -@@ -137,12 +137,9 @@ class mwrank_EllipticCurve(SageObject): - sage: E = mwrank_EllipticCurve([0,0,1,-7,6]) - sage: E.__reduce__() - (<class 'sage.libs.eclib.interface.mwrank_EllipticCurve'>, ([0, 0, 1, -7, 6], False)) -- -- - """ - return mwrank_EllipticCurve, (self.__ainvs, self.__verbose) - -- - def set_verbose(self, verbose): - """ - Set the verbosity of printing of output by the :meth:`two_descent()` and -@@ -247,53 +244,27 @@ class mwrank_EllipticCurve(SageObject): - - sage: E = mwrank_EllipticCurve([0,-1,1,0,0]) - sage: E.__repr__() -- 'y^2+ y = x^3 - x^2 ' -+ 'y^2 + y = x^3 - x^2' - """ -- # TODO: Is the use (or omission) of spaces here intentional? -- a = self.ainvs() -- s = "y^2" -- if a[0] == -1: -- s += "- x*y " -- elif a[0] == 1: -- s += "+ x*y " -- elif a[0] != 0: -- s += "+ %s*x*y "%a[0] -- if a[2] == -1: -- s += " - y" -- elif a[2] == 1: -- s += "+ y" -- elif a[2] != 0: -- s += "+ %s*y"%a[2] -- s += " = x^3 " -- if a[1] == -1: -- s += "- x^2 " -- elif a[1] == 1: -- s += "+ x^2 " -- elif a[1] != 0: -- s += "+ %s*x^2 "%a[1] -- if a[3] == -1: -- s += "- x " -- elif a[3] == 1: -- s += "+ x " -- elif a[3] != 0: -- s += "+ %s*x "%a[3] -- if a[4] == -1: -- s += "-1" -- elif a[4] == 1: -- s += "+1" -- elif a[4] != 0: -- s += "+ %s"%a[4] -- s = s.replace("+ -","- ") -- return s -+ a1, a2, a3, a4, a6 = self.__ainvs -+ # we do not assume a1, a2, a3 are reduced to {0,1}, {-1,0,1}, {0,1} -+ coeff = lambda a: ''.join([" +" if a > 0 else " -", -+ " " + str(abs(a)) if abs(a) > 1 else ""]) -+ return ''.join(['y^2', -+ ' '.join([coeff(a1), 'xy']) if a1 else '', -+ ' '.join([coeff(a3), 'y']) if a3 else '', -+ ' = x^3', -+ ' '.join([coeff(a2), 'x^2']) if a2 else '', -+ ' '.join([coeff(a4), 'x']) if a4 else '', -+ ' '.join([" +" if a6 > 0 else " -", str(abs(a6))]) if a6 else '']) - -- - def two_descent(self, -- verbose = True, -- selmer_only = False, -- first_limit = 20, -- second_limit = 8, -- n_aux = -1, -- second_descent = True): -+ verbose=True, -+ selmer_only=False, -+ first_limit=20, -+ second_limit=8, -+ n_aux=-1, -+ second_descent=True): - r""" - Compute 2-descent data for this curve. - -@@ -374,16 +345,14 @@ class mwrank_EllipticCurve(SageObject): - second_limit = int(second_limit) - n_aux = int(n_aux) - second_descent = int(second_descent) # convert from bool to (int) 0 or 1 -- # TODO: Don't allow limits above some value...??? -- # (since otherwise mwrank just sets limit tiny) - self.__descent = _two_descent() - self.__descent.do_descent(self.__curve, -- verbose, -- selmer_only, -- first_limit, -- second_limit, -- n_aux, -- second_descent) -+ verbose, -+ selmer_only, -+ first_limit, -+ second_limit, -+ n_aux, -+ second_descent) - if not self.__descent.ok(): - raise RuntimeError("A 2-descent did not complete successfully.") - self.__saturate = -2 # not yet saturated -@@ -398,11 +367,9 @@ class mwrank_EllipticCurve(SageObject): - sage: E._mwrank_EllipticCurve__two_descent_data() - <sage.libs.eclib.mwrank._two_descent object at ...> - """ -- try: -- return self.__descent -- except AttributeError: -+ if self.__descent is None: - self.two_descent(self.__verbose) -- return self.__descent -+ return self.__descent - - def conductor(self): - """ -@@ -565,22 +532,24 @@ class mwrank_EllipticCurve(SageObject): - R = self.__two_descent_data().regulator() - return float(R) - -- def saturate(self, bound=-1): -+ def saturate(self, bound=-1, lower=2): - """ -- Compute the saturation of the Mordell-Weil group at all -- primes up to ``bound``. -+ Compute the saturation of the Mordell-Weil group. - - INPUT: - -- - ``bound`` (int, default -1) -- Use `-1` (the default) to -- saturate at *all* primes, `0` for no saturation, or `n` (a -- positive integer) to saturate at all primes up to `n`. -+ - ``bound`` (int, default -1) -- If `-1`, saturate at *all* -+ primes by computing a bound on the saturation index, -+ otherwise saturate at all primes up to the minimum of -+ ``bound`` and the saturation index bound. - -+ - ``lower`` (int, default 2) -- Only saturate at primes not -+ less than this. -+ - EXAMPLES: - - Since the 2-descent automatically saturates at primes up to -- 20, it is not easy to come up with an example where saturation -- has any effect:: -+ 20, further saturation often has no effect:: - - sage: E = mwrank_EllipticCurve([0, 0, 0, -1002231243161, 0]) - sage: E.gens() -@@ -599,7 +568,7 @@ class mwrank_EllipticCurve(SageObject): - """ - bound = int(bound) - if self.__saturate < bound: -- self.__two_descent_data().saturate(bound) -+ self.__two_descent_data().saturate(bound, lower) - self.__saturate = bound - - def gens(self): -@@ -613,8 +582,7 @@ class mwrank_EllipticCurve(SageObject): - [[0, -1, 1]] - """ - self.saturate() -- L = eval(self.__two_descent_data().getbasis().replace(":",",")) -- return [[Integer(x), Integer(y), Integer(z)] for (x,y,z) in L] -+ return parse_point_list(self.__two_descent_data().getbasis()) - - def certain(self): - r""" -@@ -760,65 +728,37 @@ class mwrank_MordellWeil(SageObject): - sage: EQ.search(1) - P1 = [0:1:0] is torsion point, order 1 - P1 = [-3:0:1] is generator number 1 -- saturating up to 20...Checking 2-saturation -- Points have successfully been 2-saturated (max q used = 7) -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 7) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 23) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 41) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 17) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 43) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 31) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 37) -+ saturating up to 20...Saturation index bound (for points of good reduction) = 3 -+ Reducing saturation bound from given value 20 to computed index bound 3 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 7) -+ Checking 3-saturation -+ Points were proved 3-saturated (max q used = 7) - done - P2 = [-2:3:1] is generator number 2 -- saturating up to 20...Checking 2-saturation -+ saturating up to 20...Saturation index bound (for points of good reduction) = 4 -+ Reducing saturation bound from given value 20 to computed index bound 4 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation - possible kernel vector = [1,1] - This point may be in 2E(Q): [14:-52:1] -- ...and it is! -+ ...and it is! - Replacing old generator #1 with new generator [1:-1:1] -+ Reducing index bound from 4 to 2 - Points have successfully been 2-saturated (max q used = 7) - Index gain = 2^1 -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 13) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 67) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 53) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 73) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 103) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 113) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 47) -- done (index = 2). -+ done, index = 2. - Gained index 2, new generators = [ [1:-1:1] [-2:3:1] ] - P3 = [-14:25:8] is generator number 3 -- saturating up to 20...Checking 2-saturation -- Points have successfully been 2-saturated (max q used = 11) -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 13) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 71) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 101) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 127) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 151) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 139) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 179) -- done (index = 1). -+ saturating up to 20...Saturation index bound (for points of good reduction) = 3 -+ Reducing saturation bound from given value 20 to computed index bound 3 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 11) -+ Checking 3-saturation -+ Points were proved 3-saturated (max q used = 13) -+ done, index = 1. - P4 = [-1:3:1] = -1*P1 + -1*P2 + -1*P3 (mod torsion) - P4 = [0:2:1] = 2*P1 + 0*P2 + 1*P3 (mod torsion) - P4 = [2:13:8] = -3*P1 + 1*P2 + -1*P3 (mod torsion) -@@ -878,7 +818,7 @@ class mwrank_MordellWeil(SageObject): - sage: E = mwrank_EllipticCurve([0,0,1,-7,6]) - sage: EQ = mwrank_MordellWeil(E) - sage: EQ.__reduce__() -- (<class 'sage.libs.eclib.interface.mwrank_MordellWeil'>, (y^2+ y = x^3 - 7*x + 6, True, 1, 999)) -+ (<class 'sage.libs.eclib.interface.mwrank_MordellWeil'>, (y^2 + y = x^3 - 7 x + 6, True, 1, 999)) - """ - return mwrank_MordellWeil, (self.__curve, self.__verbose, self.__pp, self.__maxr) - -@@ -902,21 +842,20 @@ class mwrank_MordellWeil(SageObject): - """ - return "Subgroup of Mordell-Weil group: %s"%self.__mw - -- def process(self, v, sat=0): -- """ -+ def process(self, v, saturation_bound=0): -+ """Process points in the list ``v``. -+ - This function allows one to add points to a :class:`mwrank_MordellWeil` object. - -- Process points in the list ``v``, with saturation at primes up to -- ``sat``. If ``sat`` is zero (the default), do no saturation. -- - INPUT: - - - ``v`` (list of 3-tuples or lists of ints or Integers) -- a - list of triples of integers, which define points on the - curve. - -- - ``sat`` (int, default 0) -- saturate at primes up to ``sat``, or at -- *all* primes if ``sat`` is zero. -+ - ``saturation_bound`` (int, default 0) -- saturate at primes up to -+ ``saturation_bound``, or at *all* primes if ``saturation_bound`` is -1; when ``saturation_bound`` -+ is 0 (the default), do no saturation.. - - OUTPUT: - -@@ -939,11 +878,11 @@ class mwrank_MordellWeil(SageObject): - sage: EQ.points() - [[1, -1, 1], [-2, 3, 1], [-14, 25, 8]] - -- Example to illustrate the saturation parameter ``sat``:: -+ Example to illustrate the saturation parameter ``saturation_bound``:: - - sage: E = mwrank_EllipticCurve([0,0,1,-7,6]) - sage: EQ = mwrank_MordellWeil(E) -- sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], sat=20) -+ sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], saturation_bound=20) - P1 = [1547:-2967:343] is generator number 1 - ... - Gained index 5, new generators = [ [-2:3:1] [-14:25:8] [1:-1:1] ] -@@ -956,7 +895,7 @@ class mwrank_MordellWeil(SageObject): - - sage: E = mwrank_EllipticCurve([0,0,1,-7,6]) - sage: EQ = mwrank_MordellWeil(E) -- sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], sat=0) -+ sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], saturation_bound=0) - P1 = [1547:-2967:343] is generator number 1 - P2 = [2707496766203306:864581029138191:2969715140223272] is generator number 2 - P3 = [-13422227300:-49322830557:12167000000] is generator number 3 -@@ -965,55 +904,92 @@ class mwrank_MordellWeil(SageObject): - sage: EQ.regulator() - 375.42920288254555 - sage: EQ.saturate(2) # points were not 2-saturated -- saturating basis...Saturation index bound = 93 -- WARNING: saturation at primes p > 2 will not be done; -- ... -+ saturating basis...Saturation index bound (for points of good reduction) = 93 -+ Only p-saturating for p up to given value 2. -+ The resulting points may not be p-saturated for p between this and the computed index bound 93 -+ Checking saturation at [ 2 ] -+ Checking 2-saturation -+ possible kernel vector = [1,0,0] -+ This point may be in 2E(Q): [1547:-2967:343] -+ ...and it is! -+ Replacing old generator #1 with new generator [-2:3:1] -+ Reducing index bound from 93 to 46 -+ Points have successfully been 2-saturated (max q used = 11) -+ Index gain = 2^1 -+ done - Gained index 2 -- New regulator = 93.857... -- (False, 2, '[ ]') -+ New regulator = 93.85730072 -+ (True, 2, '[ ]') - sage: EQ.points() - [[-2, 3, 1], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]] - sage: EQ.regulator() - 93.85730072063639 - sage: EQ.saturate(3) # points were not 3-saturated -- saturating basis...Saturation index bound = 46 -- WARNING: saturation at primes p > 3 will not be done; -- ... -+ saturating basis...Saturation index bound (for points of good reduction) = 46 -+ Only p-saturating for p up to given value 3. -+ The resulting points may not be p-saturated for p between this and the computed index bound 46 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 11) -+ Checking 3-saturation -+ possible kernel vector = [0,1,0] -+ This point may be in 3E(Q): [2707496766203306:864581029138191:2969715140223272] -+ ...and it is! -+ Replacing old generator #2 with new generator [-14:25:8] -+ Reducing index bound from 46 to 15 -+ Points have successfully been 3-saturated (max q used = 13) -+ Index gain = 3^1 -+ done - Gained index 3 -- New regulator = 10.428... -- (False, 3, '[ ]') -+ New regulator = 10.42858897 -+ (True, 3, '[ ]') - sage: EQ.points() - [[-2, 3, 1], [-14, 25, 8], [-13422227300, -49322830557, 12167000000]] - sage: EQ.regulator() - 10.4285889689596 - sage: EQ.saturate(5) # points were not 5-saturated -- saturating basis...Saturation index bound = 15 -- WARNING: saturation at primes p > 5 will not be done; -- ... -+ saturating basis...Saturation index bound (for points of good reduction) = 15 -+ Only p-saturating for p up to given value 5. -+ The resulting points may not be p-saturated for p between this and the computed index bound 15 -+ Checking saturation at [ 2 3 5 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 11) -+ Checking 3-saturation -+ Points were proved 3-saturated (max q used = 13) -+ Checking 5-saturation -+ possible kernel vector = [0,0,1] -+ This point may be in 5E(Q): [-13422227300:-49322830557:12167000000] -+ ...and it is! -+ Replacing old generator #3 with new generator [1:-1:1] -+ Reducing index bound from 15 to 3 -+ Points have successfully been 5-saturated (max q used = 71) -+ Index gain = 5^1 -+ done - Gained index 5 -- New regulator = 0.417... -- (False, 5, '[ ]') -+ New regulator = 0.4171435588 -+ (True, 5, '[ ]') - sage: EQ.points() - [[-2, 3, 1], [-14, 25, 8], [1, -1, 1]] - sage: EQ.regulator() - 0.417143558758384 - sage: EQ.saturate() # points are now saturated -- saturating basis...Saturation index bound = 3 -+ saturating basis...Saturation index bound (for points of good reduction) = 3 -+ Tamagawa index primes are [ ] - Checking saturation at [ 2 3 ] -- Checking 2-saturation -+ Checking 2-saturation - Points were proved 2-saturated (max q used = 11) -- Checking 3-saturation -+ Checking 3-saturation - Points were proved 3-saturated (max q used = 13) - done - (True, 1, '[ ]') - """ - if not isinstance(v, list): - raise TypeError("v (=%s) must be a list"%v) -- sat = int(sat) -+ saturation_bound = int(saturation_bound) - for P in v: -- if not isinstance(P, (list,tuple)) or len(P) != 3: -+ if not isinstance(P, (list, tuple)) or len(P) != 3: - raise TypeError("v (=%s) must be a list of 3-tuples (or 3-element lists) of ints"%v) -- self.__mw.process(P, sat) -+ self.__mw.process(P, saturation_bound) - - def regulator(self): - """ -@@ -1091,23 +1067,21 @@ class mwrank_MordellWeil(SageObject): - """ - return self.__mw.rank() - -- def saturate(self, max_prime=-1, odd_primes_only=False): -- r""" -- Saturate this subgroup of the Mordell-Weil group. -+ def saturate(self, max_prime=-1, min_prime=2): -+ r"""Saturate this subgroup of the Mordell-Weil group. - - INPUT: - -- - ``max_prime`` (int, default -1) -- saturation is performed for -- all primes up to ``max_prime``. If `-1` (the default), an -+ - ``max_prime`` (int, default -1) -- If `-1` (the default), an - upper bound is computed for the primes at which the subgroup -- may not be saturated, and this is used; however, if the -- computed bound is greater than a value set by the ``eclib`` -- library (currently 97) then no saturation will be attempted -- at primes above this. -+ may not be saturated, and saturation is performed for all -+ primes up to this bound. Otherwise, the bound used is the -+ minimum of ``max_prime`` and the computed bound. - -- - ``odd_primes_only`` (bool, default ``False``) -- only do -- saturation at odd primes. (If the points have been found -- via :meth:`two_descent` they should already be 2-saturated.) -+ - ``min_prime`` (int, default 2) -- only do saturation at -+ primes no less than this. (For example, if the points have -+ been found via :meth:`two_descent` they should already be -+ 2-saturated so a value of 3 is appropriate.) - - OUTPUT: - -@@ -1115,40 +1089,35 @@ class mwrank_MordellWeil(SageObject): - - - ``ok`` (bool) -- ``True`` if and only if the saturation was - provably successful at all primes attempted. If the default -- was used for ``max_prime`` and no warning was output about -- the computed saturation bound being too high, then ``True`` -- indicates that the subgroup is saturated at *all* -- primes. -+ was used for ``max_prime``, then ``True`` indicates that the -+ subgroup is saturated at *all* primes. - - - ``index`` (int) -- the index of the group generated by the - original points in their saturation. - - - ``unsatlist`` (list of ints) -- list of primes at which -- saturation could not be proved or achieved. Increasing the -- precision should correct this, since it happens when -- a linear combination of the points appears to be a multiple -- of `p` but cannot be divided by `p`. (Note that ``eclib`` -- uses floating point methods based on elliptic logarithms to -- divide points.) -+ saturation could not be proved or achieved. - - .. note:: - -- We emphasize that if this function returns ``True`` as the -- first return argument (``ok``), and if the default was used for the -- parameter ``max_prime``, then the points in the basis after -- calling this function are saturated at *all* primes, -- i.e., saturating at the primes up to ``max_prime`` are -- sufficient to saturate at all primes. Note that the -- function might not have needed to saturate at all primes up -- to ``max_prime``. It has worked out what prime you need to -- saturate up to, and that prime might be smaller than ``max_prime``. -+ In versions up to v20190909, ``eclib`` used floating point -+ methods based on elliptic logarithms to divide points, and -+ did not compute the precision necessary, which could casue -+ failures. Since v20210310, ``eclib`` uses exact method based -+ on division polynomials, which should mean that such -+ failures does not happen. - - .. note:: - -- Currently (May 2010), this does not remember the result of -- calling :meth:`search()`. So calling :meth:`search()` up -- to height 20 then calling :meth:`saturate()` results in -- another search up to height 18. -+ We emphasize that if this function returns ``True`` as the -+ first return argument (``ok``), and if the default was used -+ for the parameter ``max_prime``, then the points in the -+ basis after calling this function are saturated at *all* -+ primes, i.e., saturating at the primes up to ``max_prime`` -+ are sufficient to saturate at all primes. Note that the -+ function computes an upper bound for the index of -+ saturation, and does no work for primes greater than this -+ even if ``max_prime`` is larger. - - EXAMPLES:: - -@@ -1160,7 +1129,7 @@ class mwrank_MordellWeil(SageObject): - automatic saturation at this stage we set the parameter - ``sat`` to 0 (which is in fact the default):: - -- sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], sat=0) -+ sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], saturation_bound=0) - P1 = [1547:-2967:343] is generator number 1 - P2 = [2707496766203306:864581029138191:2969715140223272] is generator number 2 - P3 = [-13422227300:-49322830557:12167000000] is generator number 3 -@@ -1172,12 +1141,12 @@ class mwrank_MordellWeil(SageObject): - Now we saturate at `p=2`, and gain index 2:: - - sage: EQ.saturate(2) # points were not 2-saturated -- saturating basis...Saturation index bound = 93 -- WARNING: saturation at primes p > 2 will not be done; -+ saturating basis...Saturation index bound (for points of good reduction) = 93 -+ Only p-saturating for p up to given value 2. - ... - Gained index 2 - New regulator = 93.857... -- (False, 2, '[ ]') -+ (True, 2, '[ ]') - sage: EQ - Subgroup of Mordell-Weil group: [[-2:3:1], [2707496766203306:864581029138191:2969715140223272], [-13422227300:-49322830557:12167000000]] - sage: EQ.regulator() -@@ -1186,12 +1155,12 @@ class mwrank_MordellWeil(SageObject): - Now we saturate at `p=3`, and gain index 3:: - - sage: EQ.saturate(3) # points were not 3-saturated -- saturating basis...Saturation index bound = 46 -- WARNING: saturation at primes p > 3 will not be done; -+ saturating basis...Saturation index bound (for points of good reduction) = 46 -+ Only p-saturating for p up to given value 3. - ... - Gained index 3 - New regulator = 10.428... -- (False, 3, '[ ]') -+ (True, 3, '[ ]') - sage: EQ - Subgroup of Mordell-Weil group: [[-2:3:1], [-14:25:8], [-13422227300:-49322830557:12167000000]] - sage: EQ.regulator() -@@ -1200,12 +1169,12 @@ class mwrank_MordellWeil(SageObject): - Now we saturate at `p=5`, and gain index 5:: - - sage: EQ.saturate(5) # points were not 5-saturated -- saturating basis...Saturation index bound = 15 -- WARNING: saturation at primes p > 5 will not be done; -+ saturating basis...Saturation index bound (for points of good reduction) = 15 -+ Only p-saturating for p up to given value 5. - ... - Gained index 5 - New regulator = 0.417... -- (False, 5, '[ ]') -+ (True, 5, '[ ]') - sage: EQ - Subgroup of Mordell-Weil group: [[-2:3:1], [-14:25:8], [1:-1:1]] - sage: EQ.regulator() -@@ -1215,7 +1184,8 @@ class mwrank_MordellWeil(SageObject): - the points are now provably saturated at all primes:: - - sage: EQ.saturate() # points are now saturated -- saturating basis...Saturation index bound = 3 -+ saturating basis...Saturation index bound (for points of good reduction) = 3 -+ Tamagawa index primes are [ ] - Checking saturation at [ 2 3 ] - Checking 2-saturation - Points were proved 2-saturated (max q used = 11) -@@ -1229,7 +1199,7 @@ class mwrank_MordellWeil(SageObject): - - sage: E = mwrank_EllipticCurve([0,0,1,-7,6]) - sage: EQ = mwrank_MordellWeil(E) -- sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], sat=5) -+ sage: EQ.process([[1547, -2967, 343], [2707496766203306, 864581029138191, 2969715140223272], [-13422227300, -49322830557, 12167000000]], saturation_bound=5) - P1 = [1547:-2967:343] is generator number 1 - ... - Gained index 5, new generators = [ [-2:3:1] [-14:25:8] [1:-1:1] ] -@@ -1242,7 +1212,8 @@ class mwrank_MordellWeil(SageObject): - verify that full saturation has been done:: - - sage: EQ.saturate() -- saturating basis...Saturation index bound = 3 -+ saturating basis...Saturation index bound (for points of good reduction) = 3 -+ Tamagawa index primes are [ ] - Checking saturation at [ 2 3 ] - Checking 2-saturation - Points were proved 2-saturated (max q used = 11) -@@ -1255,8 +1226,9 @@ class mwrank_MordellWeil(SageObject): - index of the points in their saturation is at most 3, then - proves saturation at 2 and at 3, by reducing the points modulo - all primes of good reduction up to 11, respectively 13. -+ - """ -- ok, index, unsat = self.__mw.saturate(int(max_prime), odd_primes_only) -+ ok, index, unsat = self.__mw.saturate(int(max_prime), int(min_prime)) - return bool(ok), int(str(index)), unsat - - def search(self, height_limit=18, verbose=False): -@@ -1271,9 +1243,9 @@ class mwrank_MordellWeil(SageObject): - - .. note:: - -- On 32-bit machines, this *must* be < 21.48 else -+ On 32-bit machines, this *must* be < 21.48 (`31\log(2)`) else - `\exp(h_{\text{lim}}) > 2^{31}` and overflows. On 64-bit machines, it -- must be *at most* 43.668. However, this bound is a logarithmic -+ must be *at most* 43.668 (`63\log(2)`) . However, this bound is a logarithmic - bound and increasing it by just 1 increases the running time - by (roughly) `\exp(1.5)=4.5`, so searching up to even 20 - takes a very long time. -@@ -1320,8 +1292,10 @@ class mwrank_MordellWeil(SageObject): - Subgroup of Mordell-Weil group: [[4413270:10381877:27000]] - """ - height_limit = float(height_limit) -- if height_limit >= 21.4: # TODO: docstring says 21.48 (for 32-bit machines; what about 64-bit...?) -- raise ValueError("The height limit must be < 21.4.") -+ int_bits = sys.maxsize.bit_length() -+ max_height_limit = int_bits * 0.693147 # log(2.0) = 0.693147 approx -+ if height_limit >= max_height_limit: -+ raise ValueError("The height limit must be < {} = {}log(2) on a {}-bit machine.".format(max_height_limit, int_bits, int_bits+1)) - - moduli_option = 0 # Use Stoll's sieving program... see strategies in ratpoints-1.4.c - -@@ -1352,5 +1326,4 @@ class mwrank_MordellWeil(SageObject): - [[1, -1, 1], [-2, 3, 1], [-14, 25, 8]] - - """ -- L = eval(self.__mw.getbasis().replace(":",",")) -- return [[Integer(x), Integer(y), Integer(z)] for (x,y,z) in L] -+ return self.__mw.getbasis() diff --git a/math/sage/files/patch-src_sage_libs_eclib_mwrank.pyx b/math/sage/files/patch-src_sage_libs_eclib_mwrank.pyx deleted file mode 100644 index fb2a2e584e48..000000000000 --- a/math/sage/files/patch-src_sage_libs_eclib_mwrank.pyx +++ /dev/null @@ -1,418 +0,0 @@ ---- src/sage/libs/eclib/mwrank.pyx.orig 2021-03-16 21:40:43 UTC -+++ src/sage/libs/eclib/mwrank.pyx -@@ -28,6 +28,7 @@ from cysignals.signals cimport sig_on, sig_off - from sage.cpython.string cimport char_to_str, str_to_bytes - from sage.cpython.string import FS_ENCODING - from sage.libs.eclib cimport bigint, Curvedata, mw, two_descent -+from sage.rings.all import Integer - - cdef extern from "wrap.cpp": - ### misc functions ### -@@ -55,8 +56,8 @@ cdef extern from "wrap.cpp": - char* mw_getbasis(mw* m) - double mw_regulator(mw* m) - int mw_rank(mw* m) -- int mw_saturate(mw* m, bigint* index, char** unsat, -- long sat_bd, int odd_primes_only) -+ int mw_saturate(mw* m, long* index, char** unsat, -+ long sat_bd, long sat_low_bd) - void mw_search(mw* m, char* h_lim, int moduli_option, int verb) - - ### two_descent ### -@@ -67,9 +68,8 @@ cdef extern from "wrap.cpp": - long two_descent_get_rank(two_descent* t) - long two_descent_get_rank_bound(two_descent* t) - long two_descent_get_selmer_rank(two_descent* t) -- void two_descent_saturate(two_descent* t, long sat_bd) -+ void two_descent_saturate(two_descent* t, long sat_bd, long sat_low_bd) - -- - cdef object string_sigoff(char* s): - sig_off() - # Makes a python string and deletes what is pointed to by s. -@@ -445,7 +445,6 @@ cdef class _Curvedata: # cython class wrapping eclib - -1269581104000000 - """ - sig_on() -- from sage.rings.all import Integer - return Integer(string_sigoff(Curvedata_getdiscr(self.x))) - - def conductor(self): -@@ -467,7 +466,6 @@ cdef class _Curvedata: # cython class wrapping eclib - 126958110400 - """ - sig_on() -- from sage.rings.all import Integer - return Integer(string_sigoff(Curvedata_conductor(self.x))) - - def isogeny_class(self, verbose=False): -@@ -503,6 +501,36 @@ cdef class _Curvedata: # cython class wrapping eclib - - ############# _mw ################# - -+def parse_point_list(s): -+ r""" -+ Parse a string representing a list of points. -+ -+ INPUT: -+ -+ - ``s`` (string) -- string representation of a list of points, for -+ example '[]', '[[1:2:3]]', or '[[1:2:3],[4:5:6]]'. -+ -+ OUTPUT: -+ -+ (list) a list of triples of integers, for example [], [[1,2,3]], [[1,2,3],[4,5,6]]. -+ -+ EXAMPLES:: -+ -+ sage: from sage.libs.eclib.mwrank import parse_point_list -+ sage: parse_point_list('[]') -+ [] -+ sage: parse_point_list('[[1:2:3]]') -+ [[1, 2, 3]] -+ sage: parse_point_list('[[1:2:3],[4:5:6]]') -+ [[1, 2, 3], [4, 5, 6]] -+ -+ """ -+ s = s.replace(":", ",").replace(" ", "") -+ if s == '[]': -+ return [] -+ pts = s[2:-2].split('],[') -+ return [[Integer(x) for x in pt.split(",")] for pt in pts] -+ - cdef class _mw: - """ - Cython class wrapping eclib's mw class. -@@ -561,72 +589,37 @@ cdef class _mw: - sage: EQ.search(1) - P1 = [0:1:0] is torsion point, order 1 - P1 = [-3:0:1] is generator number 1 -- ... -- P4 = [12:35:27] = 1*P1 + -1*P2 + -1*P3 (mod torsion) -- -- The previous command produces the following output:: -- -- P1 = [0:1:0] is torsion point, order 1 -- P1 = [-3:0:1] is generator number 1 -- saturating up to 20...Checking 2-saturation -- Points have successfully been 2-saturated (max q used = 7) -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 7) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 23) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 41) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 17) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 43) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 31) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 37) -+ saturating up to 20...Saturation index bound (for points of good reduction) = 3 -+ Reducing saturation bound from given value 20 to computed index bound 3 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 7) -+ Checking 3-saturation -+ Points were proved 3-saturated (max q used = 7) - done - P2 = [-2:3:1] is generator number 2 -- saturating up to 20...Checking 2-saturation -+ saturating up to 20...Saturation index bound (for points of good reduction) = 4 -+ Reducing saturation bound from given value 20 to computed index bound 4 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation - possible kernel vector = [1,1] - This point may be in 2E(Q): [14:-52:1] -- ...and it is! -+ ...and it is! - Replacing old generator #1 with new generator [1:-1:1] -+ Reducing index bound from 4 to 2 - Points have successfully been 2-saturated (max q used = 7) - Index gain = 2^1 -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 13) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 67) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 53) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 73) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 103) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 113) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 47) -- done (index = 2). -+ done, index = 2. - Gained index 2, new generators = [ [1:-1:1] [-2:3:1] ] - P3 = [-14:25:8] is generator number 3 -- saturating up to 20...Checking 2-saturation -- Points have successfully been 2-saturated (max q used = 11) -- Checking 3-saturation -- Points have successfully been 3-saturated (max q used = 13) -- Checking 5-saturation -- Points have successfully been 5-saturated (max q used = 71) -- Checking 7-saturation -- Points have successfully been 7-saturated (max q used = 101) -- Checking 11-saturation -- Points have successfully been 11-saturated (max q used = 127) -- Checking 13-saturation -- Points have successfully been 13-saturated (max q used = 151) -- Checking 17-saturation -- Points have successfully been 17-saturated (max q used = 139) -- Checking 19-saturation -- Points have successfully been 19-saturated (max q used = 179) -- done (index = 1). -+ saturating up to 20...Saturation index bound (for points of good reduction) = 3 -+ Reducing saturation bound from given value 20 to computed index bound 3 -+ Checking saturation at [ 2 3 ] -+ Checking 2-saturation -+ Points were proved 2-saturated (max q used = 11) -+ Checking 3-saturation -+ Points were proved 3-saturated (max q used = 13) -+ done, index = 1. - P4 = [-1:3:1] = -1*P1 + -1*P2 + -1*P3 (mod torsion) - P4 = [0:2:1] = 2*P1 + 0*P2 + 1*P3 (mod torsion) - P4 = [2:13:8] = -3*P1 + 1*P2 + -1*P3 (mod torsion) -@@ -687,7 +680,7 @@ cdef class _mw: - sig_on() - return string_sigoff(mw_getbasis(self.x)) - -- def process(self, point, sat=0): -+ def process(self, point, saturation_bound=0): - """ - Processes the given point, adding it to the mw group. - -@@ -697,10 +690,12 @@ cdef class _mw: - An ``ArithmeticError`` is raised if the point is not on the - curve. - -- - ``sat`` (int, default 0) --saturate at primes up to ``sat``. -- No saturation is done if ``sat=0``. (Note that it is more -- efficient to add several points at once and then saturate -- just once at the end). -+ - ``saturation_bound`` (int, default 0) --saturate at primes up to ``saturation_bound``. -+ No saturation is done if ``saturation_bound=0``. If ``saturation_bound=-1`` then -+ saturation is done at all primes, by computing a bound on -+ the saturation index. Note that it is more efficient to add -+ several points at once and then saturate just once at the -+ end. - - .. NOTE:: - -@@ -746,7 +741,7 @@ cdef class _mw: - cdef _bigint x,y,z - sig_on() - x,y,z = _bigint(point[0]), _bigint(point[1]), _bigint(point[2]) -- r = mw_process(self.curve, self.x, x.x, y.x, z.x, sat) -+ r = mw_process(self.curve, self.x, x.x, y.x, z.x, saturation_bound) - sig_off() - if r != 0: - raise ArithmeticError("point (=%s) not on curve." % point) -@@ -757,8 +752,8 @@ cdef class _mw: - - OUTPUT: - -- (string) String representation of the points in the basis of -- the mw group. -+ (list) list of integer triples giving the projective -+ coordinates of the points in the basis. - - EXAMPLES:: - -@@ -768,13 +763,13 @@ cdef class _mw: - sage: EQ = _mw(E) - sage: EQ.search(3) - sage: EQ.getbasis() -- '[[0:-1:1], [-1:1:1]]' -+ [[0, -1, 1], [-1, 1, 1]] - sage: EQ.rank() - 2 - """ - sig_on() - s = string_sigoff(mw_getbasis(self.x)) -- return s -+ return parse_point_list(s) - - def regulator(self): - """ -@@ -797,7 +792,7 @@ cdef class _mw: - sage: EQ = _mw(E) - sage: EQ.search(3) - sage: EQ.getbasis() -- '[[0:-1:1], [-1:1:1]]' -+ [[0, -1, 1], [-1, 1, 1]] - sage: EQ.rank() - 2 - sage: EQ.regulator() -@@ -824,40 +819,55 @@ cdef class _mw: - sage: EQ = _mw(E) - sage: EQ.search(3) - sage: EQ.getbasis() -- '[[0:-1:1], [-1:1:1]]' -+ [[0, -1, 1], [-1, 1, 1]] - sage: EQ.rank() - 2 - """ - sig_on() - r = mw_rank(self.x) - sig_off() -- from sage.rings.all import Integer - return Integer(r) - -- def saturate(self, int sat_bd=-1, int odd_primes_only=0): -+ def saturate(self, int sat_bd=-1, int sat_low_bd=2): - """ - Saturates the current subgroup of the mw group. - - INPUT: - -- - ``sat_bnd`` (int, default -1) -- bound on primes at which to -- saturate. If -1 (default), compute a bound for the primes -- which may not be saturated, and use that. -+ - ``sat_bnd`` (int, default -1) -- upper bound on primes at -+ which to saturate. If -1 (default), compute a bound for the -+ primes which may not be saturated, and use that. Otherwise, -+ the bound used is the minumum of the value of ``sat_bnd`` -+ and the computed bound. - -- - ``odd_primes_only`` (bool, default ``False``) -- only do -- saturation at odd primes. (If the points have been found -- via 2-descent they should already be 2-saturated.) -+ - ``sat_low_bd`` (int, default 2) -- only do saturation at -+ prime not less than this. For exampe, if the points have -+ been found via 2-descent they should already be 2-saturated, -+ and ``sat_low_bd=3`` is appropriate. - - OUTPUT: - - (tuple) (success flag, index, list) The success flag will be 1 - unless something failed (usually an indication that the points -- were not saturated but the precision is not high enough to -- divide out successfully). The index is the index of the mw -- group before saturation in the mw group after. The list is a -- string representation of the primes at which saturation was -- not proved or achieved. -+ were not saturated but eclib was not able to divide out -+ successfully). The index is the index of the mw group before -+ saturation in the mw group after. The list is a string -+ representation of the primes at which saturation was not -+ proved or achieved. - -+ .. NOTE:: -+ -+ ``eclib`` will compute a bound on the saturation index. If -+ the computed saturation bound is very large and ``sat_bnd`` is -+ -1, ``eclib`` may output a warning, but will still attempt to -+ saturate up to the computed bound. If a positive value of -+ ``sat_bnd`` is given which is greater than the computed bound, -+ `p`-saturation will only be carried out for primes up to the -+ compated bound. Setting ``sat_low_bnd`` to a value greater -+ than 2 allows for saturation to be done incrementally, or for -+ exactly one prime `p` by setting both ``sat_bd`` and -+ ``sat_low_bd`` to `p`. -+ - EXAMPLES:: - - sage: from sage.libs.eclib.mwrank import _Curvedata -@@ -872,34 +882,23 @@ cdef class _mw: - sage: EQ - [[-1:1:1]] - -- If we set the saturation bound at 2, then saturation will fail:: -+ If we set the saturation bound at 2, then saturation will not -+ enlarge the basis, but the success flag is still 1 (True) -+ since we did not ask to check 3-saturation:: - - sage: EQ = _mw(E) - sage: EQ.process([494, -5720, 6859]) # 3 times another point - sage: EQ.saturate(sat_bd=2) -- Saturation index bound = 10 -- WARNING: saturation at primes p > 2 will not be done; -- points may be unsaturated at primes between 2 and index bound -- Failed to saturate MW basis at primes [ ] -- (0, 1, '[ ]') -+ (1, 1, '[ ]') - sage: EQ - [[494:-5720:6859]] - -- The following output is also seen in the preceding example:: -- -- Saturation index bound = 10 -- WARNING: saturation at primes p > 2 will not be done; -- points may be unsaturated at primes between 2 and index bound -- Failed to saturate MW basis at primes [ ] -- -- - """ -- cdef _bigint index -+ cdef long index - cdef char* s - cdef int ok - sig_on() -- index = _bigint() -- ok = mw_saturate(self.x, index.x, &s, sat_bd, odd_primes_only) -+ ok = mw_saturate(self.x, &index, &s, sat_bd, sat_low_bd) - unsat = string_sigoff(s) - return ok, index, unsat - -@@ -1094,7 +1093,6 @@ cdef class _two_descent: - sig_on() - r = two_descent_get_rank(self.x) - sig_off() -- from sage.rings.all import Integer - return Integer(r) - - def getrankbound(self): -@@ -1128,7 +1126,6 @@ cdef class _two_descent: - sig_on() - r = two_descent_get_rank_bound(self.x) - sig_off() -- from sage.rings.all import Integer - return Integer(r) - - def getselmer(self): -@@ -1161,7 +1158,6 @@ cdef class _two_descent: - sig_on() - r = two_descent_get_selmer_rank(self.x) - sig_off() -- from sage.rings.all import Integer - return Integer(r) - - def ok(self): -@@ -1222,10 +1218,21 @@ cdef class _two_descent: - """ - return two_descent_get_certain(self.x) - -- def saturate(self, saturation_bound=0): -+ def saturate(self, saturation_bound=0, lower=3): - """ - Carries out saturation of the points found by a 2-descent. - -+ INPUT: -+ -+ - ``saturation_bound`` (int) -- an upper bound on the primes -+ `p` at which `p`-saturation will be carried out, or -1, in -+ which case ``eclib`` will compute an upper bound on the -+ saturation index. -+ -+ - ``lower`` (int, default 3) -- do no `p`-saturation for `p` -+ less than this. The default is 3 since the points found -+ during 2-descent will be 2-saturated. -+ - OUTPUT: - - None. -@@ -1257,7 +1264,7 @@ cdef class _two_descent: - '[[1:-1:1], [-2:3:1], [-14:25:8]]' - """ - sig_on() -- two_descent_saturate(self.x, saturation_bound) -+ two_descent_saturate(self.x, saturation_bound, 3) - sig_off() - - def getbasis(self): diff --git a/math/sage/files/patch-src_sage_libs_eclib_wrap.cpp b/math/sage/files/patch-src_sage_libs_eclib_wrap.cpp deleted file mode 100644 index 6079115f72be..000000000000 --- a/math/sage/files/patch-src_sage_libs_eclib_wrap.cpp +++ /dev/null @@ -1,29 +0,0 @@ ---- src/sage/libs/eclib/wrap.cpp.orig 2021-03-16 21:40:43 UTC -+++ src/sage/libs/eclib/wrap.cpp -@@ -178,11 +178,11 @@ int mw_rank(struct mw* m) - } - - /* Returns index and unsat long array, which user must deallocate */ --int mw_saturate(struct mw* m, bigint* index, char** unsat, -- long sat_bd, int odd_primes_only) -+int mw_saturate(struct mw* m, long* index, char** unsat, -+ long sat_bd, long sat_low_bd) - { - vector<long> v; -- int s = m->saturate(*index, v, sat_bd, odd_primes_only); -+ int s = m->saturate(*index, v, sat_bd, sat_low_bd); - ostringstream instore; - instore << v; - *unsat = stringstream_to_char(instore); -@@ -236,9 +236,9 @@ long two_descent_get_certain(const two_descent* t) - return t->getcertain(); - } - --void two_descent_saturate(struct two_descent* t, long sat_bd) -+void two_descent_saturate(struct two_descent* t, long sat_bd, long sat_low_bd) - { -- t->saturate(sat_bd); -+ t->saturate(sat_bd, sat_low_bd); - } - - double two_descent_regulator(struct two_descent* t) diff --git a/math/sage/files/pkg-message.in b/math/sage/files/pkg-message.in deleted file mode 100644 index 2936192d8b0b..000000000000 --- a/math/sage/files/pkg-message.in +++ /dev/null @@ -1,5 +0,0 @@ -Before running sage, please define and export the following variables: - -export SAGE_ROOT=%%PREFIX%% -export SAGE_LOCAL=%%PREFIX%% - diff --git a/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch b/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch deleted file mode 100644 index 9c9876ee1d25..000000000000 --- a/math/sage/files/psutil__arch__bsd__freebsd_socks.c.patch +++ /dev/null @@ -1,86 +0,0 @@ ---- a/psutil/arch/bsd/freebsd_socks.c.orig 2017-03-21 00:28:50.234080000 -0700 -+++ b/psutil/arch/bsd/freebsd_socks.c 2017-03-21 00:35:53.545508000 -0700 -@@ -112,10 +112,17 @@ - } - - -+#if __FreeBSD_version >= 1200026 -+static struct xtcpcb * -+psutil_search_tcplist(char *buf, struct kinfo_file *kif) { -+ struct xtcpcb *tp; -+ struct xinpcb *inp; -+#else - static struct tcpcb * - psutil_search_tcplist(char *buf, struct kinfo_file *kif) { - struct tcpcb *tp; - struct inpcb *inp; -+#endif - struct xinpgen *xig, *oxig; - struct xsocket *so; - -@@ -123,9 +130,15 @@ - for (xig = (struct xinpgen *)((char *)xig + xig->xig_len); - xig->xig_len > sizeof(struct xinpgen); - xig = (struct xinpgen *)((char *)xig + xig->xig_len)) { -+#if __FreeBSD_version >= 1200026 -+ tp = (struct xtcpcb *)xig; -+ inp = &tp->xt_inp; -+ so = &inp->xi_socket; -+#else - tp = &((struct xtcpcb *)xig)->xt_tp; - inp = &((struct xtcpcb *)xig)->xt_inp; - so = &((struct xtcpcb *)xig)->xt_socket; -+#endif - - if (so->so_type != kif->kf_sock_type || - so->xso_family != kif->kf_sock_domain || -@@ -208,7 +221,11 @@ - struct xinpgen *xig, *exig; - struct xinpcb *xip; - struct xtcpcb *xtp; -+#if __FreeBSD_version >= 1200026 -+ struct xinpcb *inp; -+#else - struct inpcb *inp; -+#endif - struct xsocket *so; - const char *varname = NULL; - size_t len, bufsize; -@@ -273,8 +290,13 @@ - goto error; - } - inp = &xtp->xt_inp; -+#if __FreeBSD_version >= 1200026 -+ so = &inp->xi_socket; -+ status = xtp->t_state; -+#else - so = &xtp->xt_socket; - status = xtp->xt_tp.t_state; -+#endif - break; - case IPPROTO_UDP: - xip = (struct xinpcb *)xig; -@@ -283,7 +305,11 @@ - "struct xinpcb size mismatch"); - goto error; - } -+#if __FreeBSD_version >= 1200026 -+ inp = xip; -+#else - inp = &xip->xi_inp; -+#endif - so = &xip->xi_socket; - status = PSUTIL_CONN_NONE; - break; -@@ -477,7 +503,11 @@ - struct kinfo_file *freep = NULL; - struct kinfo_file *kif; - char *tcplist = NULL; -+#if __FreeBSD_version >= 1200026 -+ struct xtcpcb *tcp; -+#else - struct tcpcb *tcp; -+#endif - - PyObject *py_retlist = PyList_New(0); - PyObject *py_tuple = NULL; diff --git a/math/sage/files/py_libs_spkg-configure.m4 b/math/sage/files/py_libs_spkg-configure.m4 deleted file mode 100644 index db82eafd4939..000000000000 --- a/math/sage/files/py_libs_spkg-configure.m4 +++ /dev/null @@ -1,11 +0,0 @@ -SAGE_SPKG_CONFIGURE( - [py_libs], [dnl direct testing for import module - AC_MSG_CHECKING(Import module py_libs...) - python3 -c "import py_libs;" > /dev/null 2>&1 - if test $? -ne 0; then - AC_MSG_RESULT(KO) - sage_spkg_install_py_libs=yes - else - AC_MSG_RESULT(OK) - fi -]) diff --git a/math/sage/files/pynac_spkg-configure.m4 b/math/sage/files/pynac_spkg-configure.m4 deleted file mode 100644 index 1eec4ca010e3..000000000000 --- a/math/sage/files/pynac_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([pynac], [ - SAGE_SPKG_DEPCHECK([gmp ntl flint singular giac], [ - dnl checking with pkg-config - PKG_CHECK_MODULES([libpynac], [pynac >= 0.7.26], [], [sage_spkg_install_pynac=yes]) - ]) -]) diff --git a/math/sage/files/rubiks_spkg-configure.m4 b/math/sage/files/rubiks_spkg-configure.m4 deleted file mode 100644 index 0f8b0264b0e4..000000000000 --- a/math/sage/files/rubiks_spkg-configure.m4 +++ /dev/null @@ -1,11 +0,0 @@ -SAGE_SPKG_CONFIGURE([rubiks], [ - AC_PATH_PROG([rubiks], [cu2]) - AC_PATH_PROG([rubiks], [cubex]) - AC_PATH_PROG([rubiks], [dikcube]) - AC_PATH_PROG([rubiks], [mcube]) - AC_PATH_PROG([rubiks], [optimal]) - AC_PATH_PROG([rubiks], [size222]) - AS_IF([test x$rubiks = x], [ - AC_MSG_NOTICE([rubiks not found. Installing rubiks]) - sage_spkg_install_rubiks=yes]) -]) diff --git a/math/sage/files/sage_brial_spkg-configure.m4.in b/math/sage/files/sage_brial_spkg-configure.m4.in deleted file mode 100644 index a757bdcc0cf2..000000000000 --- a/math/sage/files/sage_brial_spkg-configure.m4.in +++ /dev/null @@ -1,10 +0,0 @@ -SAGE_SPKG_CONFIGURE( - [sage_brial], [dnl direct testing of file existence, import do not work without sage - AC_MSG_CHECKING(py-brial installation...) - if [[ -f %%PYTHON_SITELIBDIR%%/brial/cnf.py ]] ; then - AC_MSG_RESULT(OK) - else - AC_MSG_RESULT(KO) - sage_spkg_install_sage_brial=yes - fi -]) diff --git a/math/sage/files/singular_spkg-configure.m4 b/math/sage/files/singular_spkg-configure.m4 deleted file mode 100644 index 30a222414cdc..000000000000 --- a/math/sage/files/singular_spkg-configure.m4 +++ /dev/null @@ -1,6 +0,0 @@ -SAGE_SPKG_CONFIGURE([singular], [ - SAGE_SPKG_DEPCHECK([gmp mpfr], [ - dnl checking with pkg-config - PKG_CHECK_MODULES([libSingular], [Singular >= 4.1.1], [], [sage_spkg_install_singular=yes]) - ]) -]) diff --git a/math/sage/files/threejs_spkg-configure.m4.in b/math/sage/files/threejs_spkg-configure.m4.in deleted file mode 100644 index d068477ff88d..000000000000 --- a/math/sage/files/threejs_spkg-configure.m4.in +++ /dev/null @@ -1,10 +0,0 @@ -SAGE_SPKG_CONFIGURE( - [threejs], [dnl direct testing of file existence - AC_MSG_CHECKING(ThreeJS installation...) - if [[ -f %%LOCALBASE%%/www/threejs/Three.js ]] ; then - AC_MSG_RESULT(OK) - else - AC_MSG_RESULT(KO) - sage_spkg_install_threejs=yes - fi -]) diff --git a/math/sage/files/zn_poly_spkg-configure.m4 b/math/sage/files/zn_poly_spkg-configure.m4 deleted file mode 100644 index 88bfd21c8d1d..000000000000 --- a/math/sage/files/zn_poly_spkg-configure.m4 +++ /dev/null @@ -1,8 +0,0 @@ -SAGE_SPKG_CONFIGURE([zn_poly], [ - SAGE_SPKG_DEPCHECK([gmp], [ - AC_CHECK_HEADER([zn_poly/zn_poly.h], [ - AC_SEARCH_LIBS([zn_mod_init], [zn_poly-0.9], [ - ], [sage_spkg_install_zn_poly=yes]) - ], [sage_spkg_install_zn_poly=yes]) - ]) -]) diff --git a/math/sage/pkg-descr b/math/sage/pkg-descr deleted file mode 100644 index c50ce28e3909..000000000000 --- a/math/sage/pkg-descr +++ /dev/null @@ -1,11 +0,0 @@ -Sage is a free open-source mathematics software system licensed under the GPL. -It combines the power of many existing open-source packages into a common -Python-based interface. - -Mission: Creating a viable free open source alternative to Magma, Maple, -Mathematica and Matlab. - -For instructions on adding optional packages, see files/optional-packages.txt. - -You may want to avoid the command "make install" and instead simply use the -bin/mv command to move the ${WRKSRC} directory to where-ever you want it. diff --git a/math/sage/pkg-plist b/math/sage/pkg-plist deleted file mode 100644 index 37a8b9a7f15f..000000000000 --- a/math/sage/pkg-plist +++ /dev/null @@ -1,7006 +0,0 @@ -bin/math-readline -bin/sage -bin/sage-cachegrind -bin/sage-callgrind -bin/sage-cleaner 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