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authorGerald Pfeifer <gerald@FreeBSD.org>2014-03-10 20:55:20 +0000
committerGerald Pfeifer <gerald@FreeBSD.org>2014-03-10 20:55:20 +0000
commit1cd277bdcecf80f1b3c00ed15ff1c9e707024607 (patch)
tree8b56d1724c64bf5dd76ae2dcec17c58fb797e8e1 /science
parent04bfaa8ecd94236f2723c0ece94529bf8a6f36d7 (diff)
downloadports-1cd277bdcecf80f1b3c00ed15ff1c9e707024607.tar.gz
ports-1cd277bdcecf80f1b3c00ed15ff1c9e707024607.zip
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs)
Notes
Notes: svn path=/head/; revision=347809
Diffstat (limited to 'science')
-rw-r--r--science/2dhf/Makefile2
-rw-r--r--science/R-cran-AMORE/Makefile1
-rw-r--r--science/R-cran-DCluster/Makefile2
-rw-r--r--science/R-cran-Epi/Makefile2
-rw-r--r--science/R-cran-bayesm/Makefile1
-rw-r--r--science/R-cran-e1071/Makefile1
-rw-r--r--science/R-cran-eco/Makefile2
-rw-r--r--science/R-cran-epicalc/Makefile2
-rw-r--r--science/R-cran-snow/Makefile2
-rw-r--r--science/R-cran-som/Makefile2
-rw-r--r--science/abinit/Makefile2
-rw-r--r--science/afni/Makefile2
-rw-r--r--science/avogadro/Makefile2
-rw-r--r--science/brian/Makefile2
-rw-r--r--science/cdf/Makefile2
-rw-r--r--science/cgnslib/Makefile2
-rw-r--r--science/dcl/Makefile2
-rw-r--r--science/dlpoly-classic/Makefile2
-rw-r--r--science/ecs/Makefile2
-rw-r--r--science/elmer-eio/Makefile2
-rw-r--r--science/elmer-hutiter/Makefile2
-rw-r--r--science/elmer-matc/Makefile2
-rw-r--r--science/elmerpost/Makefile2
-rw-r--r--science/flounder/Makefile2
-rw-r--r--science/fvcom/Makefile2
-rw-r--r--science/fvm/Makefile2
-rw-r--r--science/gamess/Makefile1
-rw-r--r--science/getdp/Makefile2
-rw-r--r--science/ghemical/Makefile2
-rw-r--r--science/gnudatalanguage/Makefile2
-rw-r--r--science/gromacs/Makefile2
-rw-r--r--science/harminv/Makefile2
-rw-r--r--science/hdf/Makefile2
-rw-r--r--science/hs-bio/Makefile2
-rw-r--r--science/isaac-cfd/Makefile2
-rw-r--r--science/kalzium/Makefile1
-rw-r--r--science/libctl/Makefile2
-rw-r--r--science/libghemical/Makefile2
-rw-r--r--science/libkml/Makefile1
-rw-r--r--science/mbdyn/Makefile2
-rw-r--r--science/mcstas/Makefile2
-rw-r--r--science/meep/Makefile2
-rw-r--r--science/mpb/Makefile2
-rw-r--r--science/mpqc/Makefile2
-rw-r--r--science/ncs/Makefile2
-rw-r--r--science/openkim/Makefile1
-rw-r--r--science/pnetcdf/Makefile1
-rw-r--r--science/psi3/Makefile2
-rw-r--r--science/psychopy/Makefile2
-rw-r--r--science/py-h5py/Makefile1
-rw-r--r--science/py-hcluster/Makefile2
-rw-r--r--science/py-mdp/Makefile2
-rw-r--r--science/py-mlpy/Makefile2
-rw-r--r--science/py-netCDF4/Makefile2
-rw-r--r--science/py-obspy/Makefile2
-rw-r--r--science/py-pupynere/Makefile2
-rw-r--r--science/py-pydap/Makefile1
-rw-r--r--science/py-scikit-learn/Makefile1
-rw-r--r--science/py-scimath/Makefile2
-rw-r--r--science/py-scipy/Makefile1
-rw-r--r--science/pybrain/Makefile2
-rw-r--r--science/pycdf/Makefile2
-rw-r--r--science/pynn/Makefile2
-rw-r--r--science/pyteomics/Makefile1
-rw-r--r--science/ruby-dcl/Makefile2
-rw-r--r--science/ruby-gphys/Makefile2
-rw-r--r--science/ruby-netcdf/Makefile2
-rw-r--r--science/v_sim/Makefile2
-rw-r--r--science/veusz/Makefile1
69 files changed, 69 insertions, 55 deletions
diff --git a/science/2dhf/Makefile b/science/2dhf/Makefile
index e187cb7a287e..30e852768d73 100644
--- a/science/2dhf/Makefile
+++ b/science/2dhf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= 2dhf
PORTVERSION= 2005.05
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= http://www.fizyka.umk.pl/~jkob/2dhf/
DISTNAME= ${PORTNAME}-05.05
diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index 6447c2a865bf..e2d1931495f6 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -3,6 +3,7 @@
PORTNAME= AMORE
PORTVERSION= 0.2.14
+PORTREVISION= 1
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index f019af4f1ca6..9642708b81c2 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= DCluster
DISTVERSION= 0.2-6
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index dce4ccfca99c..f5cc920ae09d 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -3,7 +3,7 @@
PORTNAME= Epi
PORTVERSION= 1.1.49
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index 6eee82f46ffd..8564233b837a 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -3,6 +3,7 @@
PORTNAME= bayesm
PORTVERSION= 2.2.5
+PORTREVISION= 1
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile
index 9b159dc9a7cf..f71208263a54 100644
--- a/science/R-cran-e1071/Makefile
+++ b/science/R-cran-e1071/Makefile
@@ -3,6 +3,7 @@
PORTNAME= e1071
DISTVERSION= 1.6-2
+PORTREVISION= 1
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index 9530f8942b83..a47154025b33 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eco
PORTVERSION= 3.1.6
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/./1}
diff --git a/science/R-cran-epicalc/Makefile b/science/R-cran-epicalc/Makefile
index e6183c54eea4..7fb456bbc825 100644
--- a/science/R-cran-epicalc/Makefile
+++ b/science/R-cran-epicalc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= epicalc
PORTVERSION= 2.15.1.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-snow/Makefile b/science/R-cran-snow/Makefile
index d3c983506a34..4f213f3c4832 100644
--- a/science/R-cran-snow/Makefile
+++ b/science/R-cran-snow/Makefile
@@ -3,7 +3,7 @@
PORTNAME= snow
DISTVERSION= 0.3-13
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-som/Makefile b/science/R-cran-som/Makefile
index 1e08a3bfe604..6f76d3f2ee18 100644
--- a/science/R-cran-som/Makefile
+++ b/science/R-cran-som/Makefile
@@ -3,7 +3,7 @@
PORTNAME= som
DISTVERSION= 0.3-5
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index b6f2ce0a1f18..4db77587a45e 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= abinit
PORTVERSION= 5.7.3
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science
MASTER_SITES= ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PORTVERSION}/
diff --git a/science/afni/Makefile b/science/afni/Makefile
index a2e99910b7ab..90e32734c4b4 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -11,7 +11,7 @@
PORTNAME= afni
PORTVERSION= 2012.04.17.2129
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science biology graphics
MASTER_SITES= http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
index e0cf625022a3..056a4ec6c169 100644
--- a/science/avogadro/Makefile
+++ b/science/avogadro/Makefile
@@ -3,7 +3,7 @@
PORTNAME= avogadro
PORTVERSION= 1.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= SF
diff --git a/science/brian/Makefile b/science/brian/Makefile
index dbd7d3e716fe..a0ef6db83e42 100644
--- a/science/brian/Makefile
+++ b/science/brian/Makefile
@@ -3,7 +3,7 @@
PORTNAME= brian
PORTVERSION= 1.4.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP \
SF/${PORTNAME}/Brian/${PORTVERSION}
diff --git a/science/cdf/Makefile b/science/cdf/Makefile
index ed630287b142..0ef89ba4d87b 100644
--- a/science/cdf/Makefile
+++ b/science/cdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cdf3
PORTVERSION= 3.3.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= ${MASTER_SITE_LOCAL} \
ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf${VER}/unix/
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index 3db38778cf7a..55ccd98e5843 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cgnslib
DISTVERSION= 3.1.4
-PORTREVISION= 1
+PORTREVISION= 2
PORTEPOCH= 1
CATEGORIES= science
MASTER_SITES= SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/dcl/Makefile b/science/dcl/Makefile
index 4aa7a5de5c00..b6c7f72ad8cd 100644
--- a/science/dcl/Makefile
+++ b/science/dcl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= dcl
PORTVERSION= 5.4.7
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science graphics
MASTER_SITES= http://www.gfd-dennou.org/library/dcl/ \
http://dennou-h.gfd-dennou.org/library/dcl/ \
diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile
index c0e77086eab7..96cc1183b04a 100644
--- a/science/dlpoly-classic/Makefile
+++ b/science/dlpoly-classic/Makefile
@@ -3,7 +3,7 @@
PORTNAME= dlpoly
PORTVERSION= 1.8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science java
MASTER_SITES= http://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/238/2028/
PKGNAMESUFFIX= classic
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index a9108f2e7197..1e77c9cccfba 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ecs
PORTVERSION= 2.0.2
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/elmer-eio/Makefile b/science/elmer-eio/Makefile
index 3050840790b8..8d26b04b4b1b 100644
--- a/science/elmer-eio/Makefile
+++ b/science/elmer-eio/Makefile
@@ -3,7 +3,7 @@
PORTNAME= eio
PORTVERSION= 5.4.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
PKGNAMEPREFIX= elmer-
diff --git a/science/elmer-hutiter/Makefile b/science/elmer-hutiter/Makefile
index 73b0c0df4342..bcc24e4e7bd3 100644
--- a/science/elmer-hutiter/Makefile
+++ b/science/elmer-hutiter/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hutiter
PORTVERSION= 5.4.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science
MASTER_SITES= http://www.nic.funet.fi/index/files/index/elmer/src/old/ \
http://www.bezopasnik.org/unix/ports/distfiles/
diff --git a/science/elmer-matc/Makefile b/science/elmer-matc/Makefile
index 6ca6c97e24f1..05750db39232 100644
--- a/science/elmer-matc/Makefile
+++ b/science/elmer-matc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= matc
PORTVERSION= 5.4.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
PKGNAMEPREFIX= elmer-
diff --git a/science/elmerpost/Makefile b/science/elmerpost/Makefile
index 16d5dc32f8d7..e5ee285852d6 100644
--- a/science/elmerpost/Makefile
+++ b/science/elmerpost/Makefile
@@ -3,7 +3,7 @@
PORTNAME= elmerpost
PORTVERSION= 5.4.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
diff --git a/science/flounder/Makefile b/science/flounder/Makefile
index 5e4924e3f42e..008c2a8b72a0 100644
--- a/science/flounder/Makefile
+++ b/science/flounder/Makefile
@@ -3,7 +3,7 @@
PORTNAME= flounder
PORTVERSION= 0.40
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= science
MASTER_SITES= http://www.enel.ucalgary.ca/People/vigmond/flounder/
EXTRACT_SUFX= .tgz
diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile
index d5f0f2665603..67a6dc513a8a 100644
--- a/science/fvcom/Makefile
+++ b/science/fvcom/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvcom
PORTVERSION= 2.7.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://fvcom.smast.umassd.edu/FVCOM/index.html/
DISTNAME= sourcecode1
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index 5221c9fc99db..8c644ccdfc79 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
PORTNAME= fvm
PORTVERSION= 0.15.3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/gamess/Makefile b/science/gamess/Makefile
index a30e51343059..898c1c3f4a8e 100644
--- a/science/gamess/Makefile
+++ b/science/gamess/Makefile
@@ -3,6 +3,7 @@
PORTNAME= gamess
PORTVERSION= ${SNAPDATE}
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= #http://www.msg.ameslab.gov/GAMESS/License_Agreement.html
DISTNAME= gamess-current
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index 61aea8f1a796..b1ba29fb826a 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -3,7 +3,7 @@
PORTNAME= getdp
PORTVERSION= 2.2.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 47fc7740c06f..456b90c98ff1 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ghemical
PORTVERSION= 3.0.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 2b5936d16a9b..5e5014c206cb 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gnudatalanguage
DISTVERSION= 0.9.4
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science lang
MASTER_SITES= SF/${PORTNAME}/gdl/${DISTVERSION}
.if defined(BUILD_PYTHON_MODULE)
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 7077678cc298..95c05c991704 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gromacs
PORTVERSION= 4.6.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 306f548439b2..6054f81c3e6e 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -3,7 +3,7 @@
PORTNAME= harminv
PORTVERSION= 1.3.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/harminv/
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index e177abb71240..08b89a3fd49f 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hdf
DISTVERSION= 4.2.8
-PORTREVISION= 1
+PORTREVISION= 2
PORTEPOCH= 1
CATEGORIES= science archivers graphics
MASTER_SITES= http://www.hdfgroup.org/ftp/HDF/releases/%SUBDIR%/
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile
index 9b702fbedb09..b73673f6b92e 100644
--- a/science/hs-bio/Makefile
+++ b/science/hs-bio/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bio
PORTVERSION= 0.5.2
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science haskell
MAINTAINER= haskell@FreeBSD.org
diff --git a/science/isaac-cfd/Makefile b/science/isaac-cfd/Makefile
index bc493e005b6f..e2112fd09943 100644
--- a/science/isaac-cfd/Makefile
+++ b/science/isaac-cfd/Makefile
@@ -3,7 +3,7 @@
PORTNAME= isaac
PORTVERSION= 4.2
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= science
MASTER_SITES= SF/${PORTNAME}-cfd/${PORTNAME}-cfd/ISAAC%20Version%20${PORTVERSION}
DISTFILES= ${PORTNAME}src.4_2${EXTRACT_SUFX} ${PORTNAME}mk.4_2${EXTRACT_SUFX}
diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile
index ee1b0ec61db7..9fa7d24c1b0a 100644
--- a/science/kalzium/Makefile
+++ b/science/kalzium/Makefile
@@ -2,6 +2,7 @@
PORTNAME= kalzium
PORTVERSION= ${KDE4_VERSION}
+PORTREVISION= 1
CATEGORIES= science kde
MASTER_SITES= KDE/${KDE4_BRANCH}/${PORTVERSION}/src
DIST_SUBDIR= KDE/${PORTVERSION}
diff --git a/science/libctl/Makefile b/science/libctl/Makefile
index c7fba79bdc55..76c876059d87 100644
--- a/science/libctl/Makefile
+++ b/science/libctl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= libctl
PORTVERSION= 3.2.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science math
MASTER_SITES= http://ab-initio.mit.edu/libctl/
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index ece81e1d9a25..d8fe32cc3c73 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -3,7 +3,7 @@
PORTNAME= libghemical
PORTVERSION= 3.0.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
http://bioinformatics.org/ghemical/download/current
diff --git a/science/libkml/Makefile b/science/libkml/Makefile
index 2acdd0ae8f1a..7040f7c38424 100644
--- a/science/libkml/Makefile
+++ b/science/libkml/Makefile
@@ -3,6 +3,7 @@
PORTNAME= libkml
PORTVERSION= 1.2.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index a7fcf307d40f..01fcbf4f18fa 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mbdyn
PORTVERSION= 1.4.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://www.aero.polimi.it/~masarati/Download/mbdyn/
diff --git a/science/mcstas/Makefile b/science/mcstas/Makefile
index b48da8339ffa..dd3eb22bfa20 100644
--- a/science/mcstas/Makefile
+++ b/science/mcstas/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mcstas
PORTVERSION= 1.12c
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://www.mcstas.org/download/ \
http://www.c-s.li/ports/
diff --git a/science/meep/Makefile b/science/meep/Makefile
index c8b0cb3dddd3..058b72a5a0ae 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
PORTNAME= meep
PORTVERSION= 1.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/meep/
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 2d1d38375820..84f85b85cf5b 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpb
PORTVERSION= 1.4.2
-PORTREVISION= 13
+PORTREVISION= 14
CATEGORIES= science
MASTER_SITES= http://ab-initio.mit.edu/mpb/
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index de01e23fb1ec..8c379b1ac49d 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mpqc
PORTVERSION= 2.3.1
-PORTREVISION= 17
+PORTREVISION= 18
CATEGORIES= science parallel
MASTER_SITES= SF
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index c149ecb37e33..0fae4e5f888c 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ncs
PORTVERSION= 2.0.4
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science parallel
MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/
DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g}
diff --git a/science/openkim/Makefile b/science/openkim/Makefile
index c4053c59b34e..601841603333 100644
--- a/science/openkim/Makefile
+++ b/science/openkim/Makefile
@@ -3,6 +3,7 @@
PORTNAME= openkim
PORTVERSION= 1.1.1
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://s3.openkim.org/openkim-api/
DISTNAME= ${PORTNAME}-api-v${PORTVERSION}
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index 74a10ce20c88..fa6696d828f1 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pnetcdf
PORTVERSION= 1.4.1
+PORTREVISION= 1
CATEGORIES= science parallel
MASTER_SITES= http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
LOCAL/sunpoet
diff --git a/science/psi3/Makefile b/science/psi3/Makefile
index 2159c78cea71..c64f8031a17d 100644
--- a/science/psi3/Makefile
+++ b/science/psi3/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi3
PORTVERSION= 3.4.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
MASTER_SITES= SF/psicode/psi/${PORTVERSION} \
http://www.psicode.org/doc/:doc \
diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile
index a46746b4dab1..703e1e32cc8e 100644
--- a/science/psychopy/Makefile
+++ b/science/psychopy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psychopy
PORTVERSION= 1.77.00
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
DISTNAME= PsychoPy-${PORTVERSION}
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index 351064ebc76c..cc1135cabfd6 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,6 +3,7 @@
PORTNAME= h5py
PORTVERSION= 2.2.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile
index 99d4c6e1eb1d..db96cc3be9d4 100644
--- a/science/py-hcluster/Makefile
+++ b/science/py-hcluster/Makefile
@@ -3,7 +3,7 @@
PORTNAME= hcluster
PORTVERSION= 0.2.0
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile
index 90a43762d4d0..3f6f10803836 100644
--- a/science/py-mdp/Makefile
+++ b/science/py-mdp/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mdp
PORTVERSION= 3.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= SF/${PORTNAME}-toolkit/${PORTNAME}-toolkit/${PORTVERSION}
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-mlpy/Makefile b/science/py-mlpy/Makefile
index 800316f958f5..95cbce39caa7 100644
--- a/science/py-mlpy/Makefile
+++ b/science/py-mlpy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mlpy
PORTVERSION= 2.2.2
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science python
MASTER_SITES= https://mlpy.fbk.eu/download/src/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index cd7f1a05eab5..32f74e26cfd6 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -3,7 +3,7 @@
PORTNAME= netCDF4
PORTVERSION= 1.0.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= GOOGLE_CODE
PROJECTHOST= netcdf4-python
diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile
index 31319faf09df..0a7605e62aca 100644
--- a/science/py-obspy/Makefile
+++ b/science/py-obspy/Makefile
@@ -3,7 +3,7 @@
PORTNAME= obspy
PORTVERSION= 0.8.4
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pupynere/Makefile b/science/py-pupynere/Makefile
index 5d78b9485a91..9ec6b1eea93d 100644
--- a/science/py-pupynere/Makefile
+++ b/science/py-pupynere/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pupynere
PORTVERSION= 1.0.15
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-pydap/Makefile b/science/py-pydap/Makefile
index 73bf53fb87c1..46fff5dedb85 100644
--- a/science/py-pydap/Makefile
+++ b/science/py-pydap/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pydap
PORTVERSION= 3.1.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile
index f4cf8c93c1f7..7f88f5a9513b 100644
--- a/science/py-scikit-learn/Makefile
+++ b/science/py-scikit-learn/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scikit-learn
PORTVERSION= 0.14.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= ${MASTER_SITE_CHEESESHOP}
MASTER_SITE_SUBDIR=source/s/scikit-learn
diff --git a/science/py-scimath/Makefile b/science/py-scimath/Makefile
index a0ff3819b880..908932f3ccaa 100644
--- a/science/py-scimath/Makefile
+++ b/science/py-scimath/Makefile
@@ -3,7 +3,7 @@
PORTNAME= scimath
PORTVERSION= 4.1.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science math python
MASTER_SITES= http://www.enthought.com/repo/ets/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index f1a35af24563..5adebea31d09 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -3,6 +3,7 @@
PORTNAME= scipy
PORTVERSION= 0.13.3
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= http://docs.scipy.org/doc/${DISTNAME}/:doc \
SF:source
diff --git a/science/pybrain/Makefile b/science/pybrain/Makefile
index c3a1127cd149..ff7bfa05a3e9 100644
--- a/science/pybrain/Makefile
+++ b/science/pybrain/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pybrain
PORTVERSION= 0.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
DISTNAME= PyBrain-${PORTVERSION}
diff --git a/science/pycdf/Makefile b/science/pycdf/Makefile
index 04f9733ed7e8..ba994549a14e 100644
--- a/science/pycdf/Makefile
+++ b/science/pycdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pycdf
PORTVERSION= 0.6.3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b
DISTNAME= ${PORTNAME}-0.6-3b
diff --git a/science/pynn/Makefile b/science/pynn/Makefile
index 23f88cbeb50f..26c61b88c1ec 100644
--- a/science/pynn/Makefile
+++ b/science/pynn/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pynn
PORTVERSION= 0.7.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/pyteomics/Makefile b/science/pyteomics/Makefile
index 5b478ceef8d7..07996ef97e85 100644
--- a/science/pyteomics/Makefile
+++ b/science/pyteomics/Makefile
@@ -2,6 +2,7 @@
PORTNAME= pyteomics
PORTVERSION= 2.2.1
+PORTREVISION= 1
CATEGORIES= science python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/ruby-dcl/Makefile b/science/ruby-dcl/Makefile
index c29e0b561a42..2a83055e6239 100644
--- a/science/ruby-dcl/Makefile
+++ b/science/ruby-dcl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= dcl
PORTVERSION= 1.7.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science graphics ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-dcl/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-dcl/release/ \
diff --git a/science/ruby-gphys/Makefile b/science/ruby-gphys/Makefile
index a0680d0148ee..3985ff26e805 100644
--- a/science/ruby-gphys/Makefile
+++ b/science/ruby-gphys/Makefile
@@ -3,7 +3,7 @@
PORTNAME= gphys
PORTVERSION= 1.2.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/gphys/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/gphys/release/ \
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
index a8e78a2ac6d7..05abe32a2fe7 100644
--- a/science/ruby-netcdf/Makefile
+++ b/science/ruby-netcdf/Makefile
@@ -3,7 +3,7 @@
PORTNAME= netcdf
PORTVERSION= 0.6.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science ruby
MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-netcdf/release/ \
http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-netcdf/release/ \
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index d07b78f640a0..d26d5560e324 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -3,7 +3,7 @@
PORTNAME= v_sim
PORTVERSION= 3.6.1.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/
diff --git a/science/veusz/Makefile b/science/veusz/Makefile
index 6d84738159ac..10167207a967 100644
--- a/science/veusz/Makefile
+++ b/science/veusz/Makefile
@@ -3,6 +3,7 @@
PORTNAME= veusz
PORTVERSION= 1.19.1
+PORTREVISION= 1
CATEGORIES= science kde
MASTER_SITES= http://download.gna.org/veusz/