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authorAndrej Zverev <az@FreeBSD.org>2014-01-29 17:00:41 +0000
committerAndrej Zverev <az@FreeBSD.org>2014-01-29 17:00:41 +0000
commitd49a8f39af11b68d4bc213cc6a967611a1fb9593 (patch)
tree5e234f5677f82b0556c4cef158acc4f8a3d6f7d4 /science
parent66a757ec56fed8978fe2b0072ed3c635d28d88ca (diff)
downloadports-d49a8f39af11b68d4bc213cc6a967611a1fb9593.tar.gz
ports-d49a8f39af11b68d4bc213cc6a967611a1fb9593.zip
- add stage support
Approved by: portmgr (blanket infrastructure)
Notes
Notes: svn path=/head/; revision=341761
Diffstat (limited to 'science')
-rw-r--r--science/p5-Chemistry-3DBuilder/Makefile3
-rw-r--r--science/p5-Chemistry-3DBuilder/pkg-descr2
-rw-r--r--science/p5-Chemistry-3DBuilder/pkg-plist1
-rw-r--r--science/p5-Chemistry-Bond-Find/Makefile3
-rw-r--r--science/p5-Chemistry-Bond-Find/pkg-descr2
-rw-r--r--science/p5-Chemistry-Bond-Find/pkg-plist1
-rw-r--r--science/p5-Chemistry-File-MDLMol/Makefile3
-rw-r--r--science/p5-Chemistry-File-MDLMol/pkg-descr2
-rw-r--r--science/p5-Chemistry-File-MDLMol/pkg-plist2
-rw-r--r--science/p5-Chemistry-File-PDB/Makefile3
-rw-r--r--science/p5-Chemistry-File-PDB/pkg-plist1
-rw-r--r--science/p5-Chemistry-File-SLN/Makefile3
-rw-r--r--science/p5-Chemistry-File-SLN/pkg-descr2
-rw-r--r--science/p5-Chemistry-File-SLN/pkg-plist1
-rw-r--r--science/p5-Chemistry-File-SMARTS/Makefile3
-rw-r--r--science/p5-Chemistry-File-SMARTS/pkg-descr2
-rw-r--r--science/p5-Chemistry-File-SMARTS/pkg-plist1
-rw-r--r--science/p5-Chemistry-File-SMILES/Makefile3
-rw-r--r--science/p5-Chemistry-File-SMILES/pkg-descr2
-rw-r--r--science/p5-Chemistry-File-SMILES/pkg-plist1
-rw-r--r--science/p5-Chemistry-File-VRML/Makefile3
-rw-r--r--science/p5-Chemistry-File-VRML/pkg-descr2
-rw-r--r--science/p5-Chemistry-File-VRML/pkg-plist1
-rw-r--r--science/p5-Chemistry-FormulaPattern/Makefile3
-rw-r--r--science/p5-Chemistry-FormulaPattern/pkg-descr2
-rw-r--r--science/p5-Chemistry-FormulaPattern/pkg-plist2
-rw-r--r--science/p5-Chemistry-InternalCoords/Makefile3
-rw-r--r--science/p5-Chemistry-InternalCoords/pkg-descr2
-rw-r--r--science/p5-Chemistry-InternalCoords/pkg-plist2
-rw-r--r--science/p5-Chemistry-Isotope/Makefile3
-rw-r--r--science/p5-Chemistry-Isotope/pkg-descr2
-rw-r--r--science/p5-Chemistry-Isotope/pkg-plist1
-rw-r--r--science/p5-Chemistry-Pattern/Makefile3
-rw-r--r--science/p5-Chemistry-Pattern/pkg-descr2
-rw-r--r--science/p5-Chemistry-Pattern/pkg-plist3
-rw-r--r--science/p5-Chemistry-Reaction/Makefile5
-rw-r--r--science/p5-Chemistry-Reaction/pkg-descr2
-rw-r--r--science/p5-Chemistry-Reaction/pkg-plist1
-rw-r--r--science/p5-Chemistry-Ring/Makefile3
-rw-r--r--science/p5-Chemistry-Ring/pkg-descr2
-rw-r--r--science/p5-Chemistry-Ring/pkg-plist2
-rw-r--r--science/p5-Geo-ReadGRIB/Makefile5
-rw-r--r--science/p5-Geo-ReadGRIB/pkg-descr2
-rw-r--r--science/p5-Geo-ReadGRIB/pkg-plist3
-rw-r--r--science/p5-PerlMol/Makefile3
-rw-r--r--science/p5-PerlMol/pkg-descr2
-rw-r--r--science/p5-PerlMol/pkg-plist1
47 files changed, 40 insertions, 66 deletions
diff --git a/science/p5-Chemistry-3DBuilder/Makefile b/science/p5-Chemistry-3DBuilder/Makefile
index 2be218d7d9f0..c24cc6138221 100644
--- a/science/p5-Chemistry-3DBuilder/Makefile
+++ b/science/p5-Chemistry-3DBuilder/Makefile
@@ -27,7 +27,4 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
USES= perl5
USE_PERL5= configure
-MAN3= Chemistry::3DBuilder.3
-
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-3DBuilder/pkg-descr b/science/p5-Chemistry-3DBuilder/pkg-descr
index 748d01c2f1a1..ca3195453682 100644
--- a/science/p5-Chemistry-3DBuilder/pkg-descr
+++ b/science/p5-Chemistry-3DBuilder/pkg-descr
@@ -2,4 +2,4 @@ Perl module which generates a three-dimensional molecular structure from a
connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.
-WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/
+WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/
diff --git a/science/p5-Chemistry-3DBuilder/pkg-plist b/science/p5-Chemistry-3DBuilder/pkg-plist
index 7783faa902f0..7dcc6930b09c 100644
--- a/science/p5-Chemistry-3DBuilder/pkg-plist
+++ b/science/p5-Chemistry-3DBuilder/pkg-plist
@@ -1,3 +1,4 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/3DBuilder/.packlist
%%SITE_PERL%%/Chemistry/3DBuilder.pm
+%%PERL5_MAN3%%/Chemistry::3DBuilder.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/3DBuilder
diff --git a/science/p5-Chemistry-Bond-Find/Makefile b/science/p5-Chemistry-Bond-Find/Makefile
index 1b0b3d64f8f2..865352dad413 100644
--- a/science/p5-Chemistry-Bond-Find/Makefile
+++ b/science/p5-Chemistry-Bond-Find/Makefile
@@ -14,10 +14,7 @@ COMMENT= Detect bonds in a molecule and assign formal bond orders
BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
-MAN3= Chemistry::Bond::Find.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Bond-Find/pkg-descr b/science/p5-Chemistry-Bond-Find/pkg-descr
index a7ecd48b85c5..f3b7465f4b27 100644
--- a/science/p5-Chemistry-Bond-Find/pkg-descr
+++ b/science/p5-Chemistry-Bond-Find/pkg-descr
@@ -2,4 +2,4 @@ Perl module which provides functions for detecting the bonds in a molecule from
its 3D coordinates by using simple cutoffs, and for guessing the formal bond
orders.
-WWW: http://search.cpan.org/dist/Chemistry-Bond-Find/
+WWW: http://search.cpan.org/dist/Chemistry-Bond-Find/
diff --git a/science/p5-Chemistry-Bond-Find/pkg-plist b/science/p5-Chemistry-Bond-Find/pkg-plist
index f333a8c0bf47..f91a859b3fde 100644
--- a/science/p5-Chemistry-Bond-Find/pkg-plist
+++ b/science/p5-Chemistry-Bond-Find/pkg-plist
@@ -1,5 +1,6 @@
%%SITE_PERL%%/Chemistry/Bond/Find.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Bond/Find/.packlist
+%%PERL5_MAN3%%/Chemistry::Bond::Find.3.gz
@dirrmtry %%SITE_PERL%%/Chemistry
@dirrmtry %%SITE_PERL%%/Chemistry/Bond
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Bond/Find
diff --git a/science/p5-Chemistry-File-MDLMol/Makefile b/science/p5-Chemistry-File-MDLMol/Makefile
index 025ffab4e336..726beecbdd35 100644
--- a/science/p5-Chemistry-File-MDLMol/Makefile
+++ b/science/p5-Chemistry-File-MDLMol/Makefile
@@ -16,10 +16,7 @@ BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring
-MAN3= Chemistry::File::MDLMol.3 Chemistry::File::SDF.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-MDLMol/pkg-descr b/science/p5-Chemistry-File-MDLMol/pkg-descr
index 702f843dbd87..af27ea6efa26 100644
--- a/science/p5-Chemistry-File-MDLMol/pkg-descr
+++ b/science/p5-Chemistry-File-MDLMol/pkg-descr
@@ -2,4 +2,4 @@ Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
-WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
+WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
diff --git a/science/p5-Chemistry-File-MDLMol/pkg-plist b/science/p5-Chemistry-File-MDLMol/pkg-plist
index 96c2c565b45c..5e0bc7dfc5f5 100644
--- a/science/p5-Chemistry-File-MDLMol/pkg-plist
+++ b/science/p5-Chemistry-File-MDLMol/pkg-plist
@@ -1,6 +1,8 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/MDLMol/.packlist
%%SITE_PERL%%/Chemistry/File/MDLMol.pm
%%SITE_PERL%%/Chemistry/File/SDF.pm
+%%PERL5_MAN3%%/Chemistry::File::MDLMol.3.gz
+%%PERL5_MAN3%%/Chemistry::File::SDF.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/MDLMol
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-File-PDB/Makefile b/science/p5-Chemistry-File-PDB/Makefile
index 7ce72110f96b..465b85bd7e38 100644
--- a/science/p5-Chemistry-File-PDB/Makefile
+++ b/science/p5-Chemistry-File-PDB/Makefile
@@ -17,7 +17,4 @@ RUN_DEPENDS:= ${BUILD_DEPENDS}
USES= perl5
USE_PERL5= configure
-MAN3= Chemistry::File::PDB.3
-
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-PDB/pkg-plist b/science/p5-Chemistry-File-PDB/pkg-plist
index 97b228fbcc7c..c31a5d20b9fa 100644
--- a/science/p5-Chemistry-File-PDB/pkg-plist
+++ b/science/p5-Chemistry-File-PDB/pkg-plist
@@ -1,5 +1,6 @@
%%SITE_PERL%%/Chemistry/File/PDB.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/PDB/.packlist
+%%PERL5_MAN3%%/Chemistry::File::PDB.3.gz
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/PDB
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-File-SLN/Makefile b/science/p5-Chemistry-File-SLN/Makefile
index bf04eae60a0e..254ea94749f6 100644
--- a/science/p5-Chemistry-File-SLN/Makefile
+++ b/science/p5-Chemistry-File-SLN/Makefile
@@ -22,10 +22,7 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \
p5-Parse-Yapp>=0:${PORTSDIR}/devel/p5-Parse-Yapp
-MAN3= Chemistry::File::SLN.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SLN/pkg-descr b/science/p5-Chemistry-File-SLN/pkg-descr
index 8f73416d835e..48a56ee858cf 100644
--- a/science/p5-Chemistry-File-SLN/pkg-descr
+++ b/science/p5-Chemistry-File-SLN/pkg-descr
@@ -1,3 +1,3 @@
SLN linear notation parser/writer
-WWW: http://search.cpan.org/dist/Chemistry-File-SLN/
+WWW: http://search.cpan.org/dist/Chemistry-File-SLN/
diff --git a/science/p5-Chemistry-File-SLN/pkg-plist b/science/p5-Chemistry-File-SLN/pkg-plist
index 769f57eec4b6..9f5f0a085749 100644
--- a/science/p5-Chemistry-File-SLN/pkg-plist
+++ b/science/p5-Chemistry-File-SLN/pkg-plist
@@ -1,6 +1,7 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SLN/.packlist
%%SITE_PERL%%/Chemistry/File/SLN/Parser.pm
%%SITE_PERL%%/Chemistry/File/SLN.pm
+%%PERL5_MAN3%%/Chemistry::File::SLN.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SLN
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
@dirrmtry %%SITE_PERL%%/Chemistry/File/SLN
diff --git a/science/p5-Chemistry-File-SMARTS/Makefile b/science/p5-Chemistry-File-SMARTS/Makefile
index 2cba1098cf00..2d08a8de9b3d 100644
--- a/science/p5-Chemistry-File-SMARTS/Makefile
+++ b/science/p5-Chemistry-File-SMARTS/Makefile
@@ -20,10 +20,7 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern \
p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES
-MAN3= Chemistry::File::SMARTS.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SMARTS/pkg-descr b/science/p5-Chemistry-File-SMARTS/pkg-descr
index 702f843dbd87..af27ea6efa26 100644
--- a/science/p5-Chemistry-File-SMARTS/pkg-descr
+++ b/science/p5-Chemistry-File-SMARTS/pkg-descr
@@ -2,4 +2,4 @@ Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
-WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
+WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
diff --git a/science/p5-Chemistry-File-SMARTS/pkg-plist b/science/p5-Chemistry-File-SMARTS/pkg-plist
index 36122a867719..072646216f6d 100644
--- a/science/p5-Chemistry-File-SMARTS/pkg-plist
+++ b/science/p5-Chemistry-File-SMARTS/pkg-plist
@@ -1,4 +1,5 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SMARTS/.packlist
%%SITE_PERL%%/Chemistry/File/SMARTS.pm
+%%PERL5_MAN3%%/Chemistry::File::SMARTS.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SMARTS
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
diff --git a/science/p5-Chemistry-File-SMILES/Makefile b/science/p5-Chemistry-File-SMILES/Makefile
index e01af8440166..9e96c17b0ed3 100644
--- a/science/p5-Chemistry-File-SMILES/Makefile
+++ b/science/p5-Chemistry-File-SMILES/Makefile
@@ -20,10 +20,7 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize \
p5-Chemistry-Ring>=0:${PORTSDIR}/science/p5-Chemistry-Ring
-MAN3= Chemistry::File::SMILES.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SMILES/pkg-descr b/science/p5-Chemistry-File-SMILES/pkg-descr
index 48f3fda7e54a..91d70728b841 100644
--- a/science/p5-Chemistry-File-SMILES/pkg-descr
+++ b/science/p5-Chemistry-File-SMILES/pkg-descr
@@ -1,4 +1,4 @@
Perl module which parses a SMILES (Simplified Molecular Input Line Entry
Specification) string.
-WWW: http://search.cpan.org/dist/Chemistry-File-SMILES/
+WWW: http://search.cpan.org/dist/Chemistry-File-SMILES/
diff --git a/science/p5-Chemistry-File-SMILES/pkg-plist b/science/p5-Chemistry-File-SMILES/pkg-plist
index 95fd708bcb1a..88d2d0922b41 100644
--- a/science/p5-Chemistry-File-SMILES/pkg-plist
+++ b/science/p5-Chemistry-File-SMILES/pkg-plist
@@ -1,6 +1,7 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SMILES/.packlist
%%SITE_PERL%%/Chemistry/File/SMILES.pm
%%SITE_PERL%%/Chemistry/File/write.pl
+%%PERL5_MAN3%%/Chemistry::File::SMILES.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/SMILES
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-File-VRML/Makefile b/science/p5-Chemistry-File-VRML/Makefile
index a5a1b2482db7..57d90e1c0c9a 100644
--- a/science/p5-Chemistry-File-VRML/Makefile
+++ b/science/p5-Chemistry-File-VRML/Makefile
@@ -14,10 +14,7 @@ COMMENT= Generate VRML models for molecules
BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
-MAN3= Chemistry::File::VRML.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-VRML/pkg-descr b/science/p5-Chemistry-File-VRML/pkg-descr
index cd67645964c4..ae0b038c53bd 100644
--- a/science/p5-Chemistry-File-VRML/pkg-descr
+++ b/science/p5-Chemistry-File-VRML/pkg-descr
@@ -1,3 +1,3 @@
Generate VRML models for molecules
-WWW: http://search.cpan.org/dist/Chemistry-File-VRML/
+WWW: http://search.cpan.org/dist/Chemistry-File-VRML/
diff --git a/science/p5-Chemistry-File-VRML/pkg-plist b/science/p5-Chemistry-File-VRML/pkg-plist
index aa788f61d75a..700217923726 100644
--- a/science/p5-Chemistry-File-VRML/pkg-plist
+++ b/science/p5-Chemistry-File-VRML/pkg-plist
@@ -1,4 +1,5 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/VRML/.packlist
%%SITE_PERL%%/Chemistry/File/VRML.pm
+%%PERL5_MAN3%%/Chemistry::File::VRML.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File/VRML
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/File
diff --git a/science/p5-Chemistry-FormulaPattern/Makefile b/science/p5-Chemistry-FormulaPattern/Makefile
index 9d9cab85ad59..8064f9b06636 100644
--- a/science/p5-Chemistry-FormulaPattern/Makefile
+++ b/science/p5-Chemistry-FormulaPattern/Makefile
@@ -16,10 +16,7 @@ BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern
-MAN3= Chemistry::FormulaPattern.3 Chemistry::File::FormulaPattern.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-FormulaPattern/pkg-descr b/science/p5-Chemistry-FormulaPattern/pkg-descr
index 17d709facad7..140898419168 100644
--- a/science/p5-Chemistry-FormulaPattern/pkg-descr
+++ b/science/p5-Chemistry-FormulaPattern/pkg-descr
@@ -1,3 +1,3 @@
Match molecule by formula
-WWW: http://search.cpan.org/dist/Chemistry-ForumulaPattern/
+WWW: http://search.cpan.org/dist/Chemistry-ForumulaPattern/
diff --git a/science/p5-Chemistry-FormulaPattern/pkg-plist b/science/p5-Chemistry-FormulaPattern/pkg-plist
index db576c29b344..dc65fa11211e 100644
--- a/science/p5-Chemistry-FormulaPattern/pkg-plist
+++ b/science/p5-Chemistry-FormulaPattern/pkg-plist
@@ -1,5 +1,7 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/FormulaPattern/.packlist
%%SITE_PERL%%/Chemistry/File/FormulaPattern.pm
%%SITE_PERL%%/Chemistry/FormulaPattern.pm
+%%PERL5_MAN3%%/Chemistry::FormulaPattern.3.gz
+%%PERL5_MAN3%%/Chemistry::File::FormulaPattern.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/FormulaPattern
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-InternalCoords/Makefile b/science/p5-Chemistry-InternalCoords/Makefile
index affc5bfc100f..bf7dc44f77e1 100644
--- a/science/p5-Chemistry-InternalCoords/Makefile
+++ b/science/p5-Chemistry-InternalCoords/Makefile
@@ -18,10 +18,7 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-Bond-Find>=0:${PORTSDIR}/science/p5-Chemistry-Bond-Find \
p5-Chemistry-Canonicalize>=0:${PORTSDIR}/science/p5-Chemistry-Canonicalize
-MAN3= Chemistry::InternalCoords.3 Chemistry::InternalCoords::Builder.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-InternalCoords/pkg-descr b/science/p5-Chemistry-InternalCoords/pkg-descr
index 5c8ac06f3353..f94ba4de4834 100644
--- a/science/p5-Chemistry-InternalCoords/pkg-descr
+++ b/science/p5-Chemistry-InternalCoords/pkg-descr
@@ -2,4 +2,4 @@ Perl module implements an object class for representing internal
coordinates and provides methods for converting them to Cartesian
coordinates.
-WWW: http://search.cpan.org/dist/Chemistry-InternalCoords/
+WWW: http://search.cpan.org/dist/Chemistry-InternalCoords/
diff --git a/science/p5-Chemistry-InternalCoords/pkg-plist b/science/p5-Chemistry-InternalCoords/pkg-plist
index e43b10d977a9..7dfdb7245952 100644
--- a/science/p5-Chemistry-InternalCoords/pkg-plist
+++ b/science/p5-Chemistry-InternalCoords/pkg-plist
@@ -1,6 +1,8 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/InternalCoords/.packlist
%%SITE_PERL%%/Chemistry/InternalCoords/Builder.pm
%%SITE_PERL%%/Chemistry/InternalCoords.pm
+%%PERL5_MAN3%%/Chemistry::InternalCoords.3.gz
+%%PERL5_MAN3%%/Chemistry::InternalCoords::Builder.3.gz
@dirrmtry %%SITE_PERL%%/Chemistry/InternalCoords
@dirrmtry %%SITE_PERL%%/Chemistry
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/InternalCoords
diff --git a/science/p5-Chemistry-Isotope/Makefile b/science/p5-Chemistry-Isotope/Makefile
index 20957e723114..a22a183da36e 100644
--- a/science/p5-Chemistry-Isotope/Makefile
+++ b/science/p5-Chemistry-Isotope/Makefile
@@ -11,10 +11,7 @@ PKGNAMEPREFIX= p5-
MAINTAINER= swills@FreeBSD.org
COMMENT= Table of the isotopes exact mass data
-MAN3= Chemistry::Isotope.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Isotope/pkg-descr b/science/p5-Chemistry-Isotope/pkg-descr
index a4173ea1be64..1be6139b09e7 100644
--- a/science/p5-Chemistry-Isotope/pkg-descr
+++ b/science/p5-Chemistry-Isotope/pkg-descr
@@ -1,3 +1,3 @@
Perl module which contains the exact mass data from the table of the isotopes.
-WWW: http://search.cpan.org/dist/Chemistry-Isotope/
+WWW: http://search.cpan.org/dist/Chemistry-Isotope/
diff --git a/science/p5-Chemistry-Isotope/pkg-plist b/science/p5-Chemistry-Isotope/pkg-plist
index e2e6fc779466..304c7ee80c1a 100644
--- a/science/p5-Chemistry-Isotope/pkg-plist
+++ b/science/p5-Chemistry-Isotope/pkg-plist
@@ -1,5 +1,6 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Isotope/.packlist
%%SITE_PERL%%/Chemistry/Isotope.pm
+%%PERL5_MAN3%%/Chemistry::Isotope.3.gz
@dirrmtry %%SITE_PERL%%/Chemistry
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Isotope
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-Pattern/Makefile b/science/p5-Chemistry-Pattern/Makefile
index 0480aa5fd76e..198d68646f58 100644
--- a/science/p5-Chemistry-Pattern/Makefile
+++ b/science/p5-Chemistry-Pattern/Makefile
@@ -14,10 +14,7 @@ COMMENT= Chemical substructure pattern matching
BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol
-MAN3= Chemistry::Pattern.3 Chemistry::Pattern::Atom.3 Chemistry::Pattern::Bond.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Pattern/pkg-descr b/science/p5-Chemistry-Pattern/pkg-descr
index abdf9ad02a5f..be593aa30060 100644
--- a/science/p5-Chemistry-Pattern/pkg-descr
+++ b/science/p5-Chemistry-Pattern/pkg-descr
@@ -1,3 +1,3 @@
Perl module which implements basic pattern matching for molecules.
-WWW: http://search.cpan.org/dist/Chemistry-Pattern/
+WWW: http://search.cpan.org/dist/Chemistry-Pattern/
diff --git a/science/p5-Chemistry-Pattern/pkg-plist b/science/p5-Chemistry-Pattern/pkg-plist
index 1128c8b09a14..a87d730179e1 100644
--- a/science/p5-Chemistry-Pattern/pkg-plist
+++ b/science/p5-Chemistry-Pattern/pkg-plist
@@ -2,6 +2,9 @@
%%SITE_PERL%%/Chemistry/Pattern/Bond.pm
%%SITE_PERL%%/Chemistry/Pattern.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Pattern/.packlist
+%%PERL5_MAN3%%/Chemistry::Pattern.3.gz
+%%PERL5_MAN3%%/Chemistry::Pattern::Atom.3.gz
+%%PERL5_MAN3%%/Chemistry::Pattern::Bond.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Pattern
@dirrmtry %%SITE_PERL%%/Chemistry/Pattern
@dirrmtry %%SITE_PERL%%/Chemistry
diff --git a/science/p5-Chemistry-Reaction/Makefile b/science/p5-Chemistry-Reaction/Makefile
index 1174331659a1..12d4490af405 100644
--- a/science/p5-Chemistry-Reaction/Makefile
+++ b/science/p5-Chemistry-Reaction/Makefile
@@ -9,7 +9,7 @@ MASTER_SITE_SUBDIR= CPAN:ITUB
PKGNAMEPREFIX= p5-
MAINTAINER= swills@FreeBSD.org
-COMMENT= Represent a ring as a substructure of a molecule
+COMMENT= Represent a ring as a substructure of a molecule
BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Chemistry-File-SMILES>=0:${PORTSDIR}/science/p5-Chemistry-File-SMILES \
@@ -20,10 +20,7 @@ RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression \
p5-Chemistry-Pattern>=0:${PORTSDIR}/science/p5-Chemistry-Pattern
-MAN3= Chemistry::Reaction.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Reaction/pkg-descr b/science/p5-Chemistry-Reaction/pkg-descr
index 59c0905577d9..2544a6bf0bc3 100644
--- a/science/p5-Chemistry-Reaction/pkg-descr
+++ b/science/p5-Chemistry-Reaction/pkg-descr
@@ -1,3 +1,3 @@
Explicit chemical reactions
-WWW: http://search.cpan.org/dist/Chemistry-Raction/
+WWW: http://search.cpan.org/dist/Chemistry-Raction/
diff --git a/science/p5-Chemistry-Reaction/pkg-plist b/science/p5-Chemistry-Reaction/pkg-plist
index e29ce60303dc..14d56be4345d 100644
--- a/science/p5-Chemistry-Reaction/pkg-plist
+++ b/science/p5-Chemistry-Reaction/pkg-plist
@@ -1,4 +1,5 @@
%%SITE_PERL%%/Chemistry/Reaction.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Reaction/.packlist
+%%PERL5_MAN3%%/Chemistry::Reaction.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Reaction
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry
diff --git a/science/p5-Chemistry-Ring/Makefile b/science/p5-Chemistry-Ring/Makefile
index f9133fb4b5e2..3564f93064f4 100644
--- a/science/p5-Chemistry-Ring/Makefile
+++ b/science/p5-Chemistry-Ring/Makefile
@@ -16,10 +16,7 @@ BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
RUN_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
p5-Statistics-Regression>=0:${PORTSDIR}/math/p5-Statistics-Regression
-MAN3= Chemistry::Ring.3 Chemistry::Ring::Find.3
-
USES= perl5
USE_PERL5= configure
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Ring/pkg-descr b/science/p5-Chemistry-Ring/pkg-descr
index 00c2eec12763..c7eb839a5d12 100644
--- a/science/p5-Chemistry-Ring/pkg-descr
+++ b/science/p5-Chemistry-Ring/pkg-descr
@@ -1,3 +1,3 @@
Perl module which provides some basic methods for representing a ring.
-WWW: http://search.cpan.org/dist/Chemistry-Ring/
+WWW: http://search.cpan.org/dist/Chemistry-Ring/
diff --git a/science/p5-Chemistry-Ring/pkg-plist b/science/p5-Chemistry-Ring/pkg-plist
index 4786e619393d..adcf3874c3e4 100644
--- a/science/p5-Chemistry-Ring/pkg-plist
+++ b/science/p5-Chemistry-Ring/pkg-plist
@@ -1,5 +1,7 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Ring/.packlist
%%SITE_PERL%%/Chemistry/Ring/Find.pm
%%SITE_PERL%%/Chemistry/Ring.pm
+%%PERL5_MAN3%%/Chemistry::Ring.3.gz
+%%PERL5_MAN3%%/Chemistry::Ring::Find.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/Ring
@dirrmtry %%SITE_PERL%%/Chemistry/Ring
diff --git a/science/p5-Geo-ReadGRIB/Makefile b/science/p5-Geo-ReadGRIB/Makefile
index 2c80dd29bf7a..4b9166c32961 100644
--- a/science/p5-Geo-ReadGRIB/Makefile
+++ b/science/p5-Geo-ReadGRIB/Makefile
@@ -13,9 +13,4 @@ COMMENT= Perl module provides read access to GRIB files
USES= perl5
USE_PERL5= configure
-MAN3= Geo::ReadGRIB.3 \
- Geo::ReadGRIB::Place.3 \
- Geo::ReadGRIB::PlaceIterator.3
-
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-ReadGRIB/pkg-descr b/science/p5-Geo-ReadGRIB/pkg-descr
index d10001dbf642..956f5250ac1a 100644
--- a/science/p5-Geo-ReadGRIB/pkg-descr
+++ b/science/p5-Geo-ReadGRIB/pkg-descr
@@ -3,4 +3,4 @@ access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.
-WWW: http://search.cpan.org/dist/Geo-ReadGRIB/
+WWW: http://search.cpan.org/dist/Geo-ReadGRIB/
diff --git a/science/p5-Geo-ReadGRIB/pkg-plist b/science/p5-Geo-ReadGRIB/pkg-plist
index bfec1c378d53..f4120a4ee2a3 100644
--- a/science/p5-Geo-ReadGRIB/pkg-plist
+++ b/science/p5-Geo-ReadGRIB/pkg-plist
@@ -5,6 +5,9 @@
%%SITE_PERL%%/Geo/Sample-GRIB/2009100900_P000.grib
%%SITE_PERL%%/Geo/ReadGRIB/PlaceIterator.pm
%%SITE_PERL%%/Geo/ReadGRIB/Place.pm
+%%PERL5_MAN3%%/Geo::ReadGRIB.3.gz
+%%PERL5_MAN3%%/Geo::ReadGRIB::Place.3.gz
+%%PERL5_MAN3%%/Geo::ReadGRIB::PlaceIterator.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Geo/ReadGRIB
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Geo
@dirrm %%SITE_PERL%%/Geo/Sample-GRIB
diff --git a/science/p5-PerlMol/Makefile b/science/p5-PerlMol/Makefile
index 721f3cf826af..c1b16964b3ea 100644
--- a/science/p5-PerlMol/Makefile
+++ b/science/p5-PerlMol/Makefile
@@ -61,7 +61,4 @@ BUILD_DEPENDS= p5-Chemistry-Mol>=0:${PORTSDIR}/science/p5-Chemistry-Mol \
USES= perl5
USE_PERL5= configure
-MAN3= PerlMol.3
-
-NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-PerlMol/pkg-descr b/science/p5-PerlMol/pkg-descr
index c80ab5453065..a7c21e559271 100644
--- a/science/p5-PerlMol/pkg-descr
+++ b/science/p5-PerlMol/pkg-descr
@@ -1,3 +1,3 @@
Perl modules for molecular chemistry
-WWW: http://search.cpan.org/dist/PerlMol/
+WWW: http://search.cpan.org/dist/PerlMol/
diff --git a/science/p5-PerlMol/pkg-plist b/science/p5-PerlMol/pkg-plist
index 7a8805d74de3..ba6c1c3f2a70 100644
--- a/science/p5-PerlMol/pkg-plist
+++ b/science/p5-PerlMol/pkg-plist
@@ -1,3 +1,4 @@
%%SITE_PERL%%/%%PERL_ARCH%%/auto/PerlMol/.packlist
%%SITE_PERL%%/PerlMol.pm
+%%PERL5_MAN3%%/PerlMol.3.gz
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/PerlMol