1 files changed, 0 insertions, 56 deletions
diff --git a/biology/p5-bioperl-devel/files/patch-Makefile.PL b/biology/p5-bioperl-devel/files/patch-Makefile.PL
deleted file mode 100644
index 7790c998f8c2..000000000000
--- a/biology/p5-bioperl-devel/files/patch-Makefile.PL
+++ /dev/null
@@ -1,56 +0,0 @@
---- Makefile.PL.orig	Sun Oct  9 17:16:18 2005
-+++ Makefile.PL	Wed Nov 30 13:58:20 2005
-@@ -41,7 +41,7 @@
- 	     'XML::SAX'                 => '0.0/New style SAX parser/Parsers/Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax',
- 	     'XML::SAX::Base'                 => '0.0/New style SAX parser/Parsers/Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax',
- 	     'XML::SAX::Writer'         => '0.0/New style SAX parser/Writers/Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax',
-- 	     'Bio::ANS1::EntrezGene'    => '0.0/Enztrez Gene Bioperl Parser/Parsers/Bio::SeqIO::entrezgene'
-+ 	     'Bio::ASN1::EntrezGene'    => '0.0/Enztrez Gene Bioperl Parser/Parsers/Bio::SeqIO::entrezgene'
- # Bio::Microarray is not in core bioperl yet
- #	     'enum'                     => '0.0/C style enumerated types and bitmask flags 
- # in Perl/Bio::Microarray::Affymetrix::*',
-@@ -95,7 +95,7 @@
- sub prompt_for_biodbgff {
-   if(  eval { require DBI } && grep {/mysql/} DBI->available_drivers) {
-     print "\n** Bio::DB::GFF Tests section** \n";
--    my $proceed = prompt("Do you want to run the BioDBGFF tests (requires a mysql, postgres or oracle database) y/n",'n');
-+    my $proceed = 'n'; # prompt("Do you want to run the BioDBGFF tests (requires a mysql, postgres or oracle database) y/n",'n');
-     if( $proceed =~ /^[yY]/) {
-       my $cfg = {dbd_driver => 'mysql'};
-       GFFQueryDb($cfg,{'prompt'=>1,'verbose'=>1});
-@@ -129,7 +129,7 @@
- sub get_scripts_to_install {
-   print "\n*** Script Install Section ****\n";
-   print "\nBioperl comes with a number of useful scripts which you may wish to install.\n";
--  my $prompt_mode = prompt("Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively?",'a');
-+  my $prompt_mode = 'a'; # prompt("Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively?",'a');
-   return if $prompt_mode =~ /^[nN]/;
-   my @scripts;
-   my $script_dir = './scripts';
-@@ -378,16 +378,16 @@
- );
- 
- 
--sub MY::manifypods {
--  my $self = shift;
--  #print STDERR "In manifypods moment\n";
--  if( 1 ) {
--    return "\nmanifypods : pure_all\n\t$self->{NOECHO}\$(NOOP)\n"
--  }
--  else {
--    return $self->SUPER::manifypods(@_);
--  }
--}
-+#sub MY::manifypods {
-+#  my $self = shift;
-+#  #print STDERR "In manifypods moment\n";
-+#  if( 1 ) {
-+#    return "\nmanifypods : pure_all\n\t$self->{NOECHO}\$(NOOP)\n"
-+#  }
-+#  else {
-+#    return $self->SUPER::manifypods(@_);
-+#  }
-+#}
- 
- sub MY::clean {
-   package MY;