diff options
Diffstat (limited to 'science')
| -rw-r--r-- | science/hs-bio/Makefile | 4 | ||||
| -rw-r--r-- | science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs | 7 | ||||
| -rw-r--r-- | science/hs-bio/files/patch-examples__RSelectPE.hs | 8 |
3 files changed, 9 insertions, 10 deletions
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile index 9910dc693d39..d978ddb89198 100644 --- a/science/hs-bio/Makefile +++ b/science/hs-bio/Makefile @@ -3,7 +3,7 @@ PORTNAME= bio PORTVERSION= 0.5.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science haskell MAINTAINER= haskell@FreeBSD.org @@ -11,7 +11,7 @@ COMMENT= Bioinformatics library LICENSE= LGPL21 -USE_CABAL= mtl parallel parsec QuickCheck>=2 random tagsoup>=0.8 +USE_CABAL= mtl old-time parallel parsec QuickCheck>=2 random tagsoup>=0.8 EXECUTABLE= fastout flowclip flx frecover frename orf rselect-pe diff --git a/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs b/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs new file mode 100644 index 000000000000..f7ba1305fb88 --- /dev/null +++ b/science/hs-bio/files/patch-Bio_Alignment_Bowtie.hs @@ -0,0 +1,7 @@ +--- Bio/Alignment/Bowtie.hs.orig 2013-07-20 07:25:31 UTC ++++ Bio/Alignment/Bowtie.hs +@@ -1,3 +1,4 @@ ++{-# LANGUAGE FlexibleContexts #-} + {-| This module provides a data type to represent an alignment + produced by the Bowtie short-read alignment tool (see + <http://bowtie-bio.sourceforge.net/index.shtml>). diff --git a/science/hs-bio/files/patch-examples__RSelectPE.hs b/science/hs-bio/files/patch-examples__RSelectPE.hs deleted file mode 100644 index 6ca244b9f7c4..000000000000 --- a/science/hs-bio/files/patch-examples__RSelectPE.hs +++ /dev/null @@ -1,8 +0,0 @@ ---- ./examples/RSelectPE.hs.orig 2011-12-15 12:56:28.000000000 +0100 -+++ ./examples/RSelectPE.hs 2011-12-17 11:46:58.000000000 +0100 -@@ -1,5 +1,3 @@ --{- | Randomly select paired end (illumina) reads -} -- - import System.Environment (getArgs) - import Data.List (isSuffixOf) - import System.Random |