diff options
Diffstat (limited to 'science')
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/antioch/Makefile | 36 | ||||
| -rw-r--r-- | science/antioch/distinfo | 3 | ||||
| -rw-r--r-- | science/antioch/files/patch-Makefile.am | 11 | ||||
| -rw-r--r-- | science/antioch/files/patch-configure.ac | 13 | ||||
| -rw-r--r-- | science/antioch/files/patch-share_Makefile.am | 15 | ||||
| -rw-r--r-- | science/antioch/pkg-descr | 6 | ||||
| -rw-r--r-- | science/antioch/pkg-plist | 160 |
8 files changed, 245 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 6a1a7607c72f..e679cdab2631 100644 --- a/science/Makefile +++ b/science/Makefile @@ -24,6 +24,7 @@ SUBDIR += R-cran-udunits2 SUBDIR += afni SUBDIR += aircraft-datcom + SUBDIR += antioch SUBDIR += avogadro SUBDIR += bddsolve SUBDIR += bft diff --git a/science/antioch/Makefile b/science/antioch/Makefile new file mode 100644 index 000000000000..ee878d8ef9ad --- /dev/null +++ b/science/antioch/Makefile @@ -0,0 +1,36 @@ +# $FreeBSD$ + +PORTNAME= antioch +DISTVERSIONPREFIX= v +DISTVERSION= 0.4.0-156 +DISTVERSIONSUFFIX= -g90ffa43 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C++ Chemical Kinetics, Thermodynaimics, and Transport Library + +LICENSE= LGPL21 +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= ${LOCALBASE}/include/metaphysicl/metaphysicl_version.h:science/metaphysicl \ + ${LOCALBASE}/include/viennacl/vector.hpp:math/viennacl +LIB_DEPENDS= libgsl.so:math/gsl \ + libOpenCL.so:devel/ocl-icd + +USES= autoreconf eigen:3 gmake libtool localbase +USE_GITHUB= yes +GH_ACCOUNT= libantioch +GNU_CONFIGURE= yes +USE_LDCONFIG= yes + +CONFIGURE_ARGS= --disable-static \ + --enable-eigen --with-eigen-include=${LOCALBASE}/include/eigen3 \ + --enable-opencl \ + --with-metaphysicl=${LOCALBASE} \ + --with-viennacl=${LOCALBASE}/include \ + --with-gsl=${LOCALBASE} + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libantioch.so.0.0.0 + +.include <bsd.port.mk> diff --git a/science/antioch/distinfo b/science/antioch/distinfo new file mode 100644 index 000000000000..17f63cad74c9 --- /dev/null +++ b/science/antioch/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1524017800 +SHA256 (libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz) = 22fe4d70fbc9c9abe3f5a0dcca9ea4e7f78d0b3ebf2b1af08a68bafcda0d43ff +SIZE (libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz) = 767056 diff --git a/science/antioch/files/patch-Makefile.am b/science/antioch/files/patch-Makefile.am new file mode 100644 index 000000000000..25d669acc595 --- /dev/null +++ b/science/antioch/files/patch-Makefile.am @@ -0,0 +1,11 @@ +--- Makefile.am.orig 2018-04-18 06:06:18 UTC ++++ Makefile.am +@@ -4,7 +4,7 @@ include $(top_srcdir)/doxygen/aminclude. + AUTOMAKE_OPTIONS = foreign + ACLOCAL_AMFLAGS = -I m4 -I m4/common + +-SUBDIRS = src test doxygen share examples ++SUBDIRS = src test doxygen share + EXTRA_DIST = CHANGES LICENSE COPYING share + + # Eliminate .svn directories in dist tarball diff --git a/science/antioch/files/patch-configure.ac b/science/antioch/files/patch-configure.ac new file mode 100644 index 000000000000..861701cb4bcb --- /dev/null +++ b/science/antioch/files/patch-configure.ac @@ -0,0 +1,13 @@ +--- configure.ac.orig 2018-04-18 05:44:31 UTC ++++ configure.ac +@@ -265,8 +265,8 @@ AC_SUBST(ANTIOCH_STAMPED_FILES) + # to make it $datadir/antioch_default_files + # then we define the default files + # Need to make sure to have the `/` at the end +-ANTIOCH_DEFAULT_FILES_SOURCE_PATH_TMP=$TOP_SEARCH_DIR/share/antioch_default_files/ +-ANTIOCH_DEFAULT_FILES_INSTALL_PATH_TMP=$prefix/share/antioch_default_files/ ++ANTIOCH_DEFAULT_FILES_SOURCE_PATH_TMP=$TOP_SEARCH_DIR/share/antioch/default_files/ ++ANTIOCH_DEFAULT_FILES_INSTALL_PATH_TMP=$prefix/share/antioch/default_files/ + ANTIOCH_SHARE_XML_INPUT_FILES_SOURCE_PATH_TMP=$TOP_SEARCH_DIR/share/xml_inputs/ + ANTIOCH_SHARE_XML_INPUT_FILES_INSTALL_PATH_TMP=$prefix/share/xml_inputs/ + ANTIOCH_TESTING_INPUT_FILES_PATH_TMP=$TOP_SEARCH_DIR/test/input_files/ diff --git a/science/antioch/files/patch-share_Makefile.am b/science/antioch/files/patch-share_Makefile.am new file mode 100644 index 000000000000..2170ae03f444 --- /dev/null +++ b/science/antioch/files/patch-share_Makefile.am @@ -0,0 +1,15 @@ +--- share/Makefile.am.orig 2018-04-13 14:56:50 UTC ++++ share/Makefile.am +@@ -1,10 +1,10 @@ + aclocaldir = $(prefix)/share/aclocal + aclocal_DATA = $(top_srcdir)/share/aclocal/* + +-antioch_default_filesdir = $(prefix)/share/antioch_default_files ++antioch_default_filesdir = $(prefix)/share/antioch/default_files + antioch_default_files_DATA = $(top_srcdir)/share/antioch_default_files/* + +-xml_inputsdir = $(prefix)/share/xml_inputs ++xml_inputsdir = $(prefix)/share/antioch/xml_inputs + xml_inputs_DATA = $(top_srcdir)/share/xml_inputs/* + + EXTRA_DIST = $(aclocal_DATA) diff --git a/science/antioch/pkg-descr b/science/antioch/pkg-descr new file mode 100644 index 000000000000..c5f1cda585bd --- /dev/null +++ b/science/antioch/pkg-descr @@ -0,0 +1,6 @@ +A New Templated Implementation Of Chemistry for Hydrodynamics (Antioch) was +initiated to centralize work within the realm of hypersonic aerodynamics, +based on the libMesh finite element library. It's features include +thread-safety and high performance. + +WWW: https://libantioch.github.io/ diff --git a/science/antioch/pkg-plist b/science/antioch/pkg-plist new file mode 100644 index 000000000000..39cb99ee6769 --- /dev/null +++ b/science/antioch/pkg-plist @@ -0,0 +1,160 @@ +bin/antioch_version +include/antioch/antioch_asserts.h +include/antioch/antioch_exceptions.h +include/antioch/antioch_numeric_type_instantiate_macro.h +include/antioch/antioch_version.h +include/antioch/arrhenius_rate.h +include/antioch/arrhenius_rate_test_helper.h +include/antioch/arrhenius_rate_vector_test_base.h +include/antioch/ascii_parser.h +include/antioch/ascii_parser_instantiation_macro.h +include/antioch/berthelot_rate.h +include/antioch/berthelothercourtessen_rate.h +include/antioch/binary_diffusion_base.h +include/antioch/blottner_parsing.h +include/antioch/blottner_parsing_instantiate_macro.h +include/antioch/blottner_viscosity.h +include/antioch/cea_curve_fit.h +include/antioch/cea_evaluator.h +include/antioch/cea_mixture.h +include/antioch/cea_mixture_ascii_parsing.h +include/antioch/cea_mixture_ascii_parsing_instantiate_macro.h +include/antioch/cea_mixture_parsing.h +include/antioch/chemical_mixture.h +include/antioch/chemical_species.h +include/antioch/chemkin_definitions.h +include/antioch/chemkin_parser.h +include/antioch/cmath_shims.h +include/antioch/conductivity_traits.h +include/antioch/constant_lewis_diffusivity.h +include/antioch/constant_lewis_diffusivity_building.h +include/antioch/constant_rate.h +include/antioch/converter.h +include/antioch/default_filename.h +include/antioch/diffusion_traits.h +include/antioch/duplicate_reaction.h +include/antioch/eigen_utils.h +include/antioch/eigen_utils_decl.h +include/antioch/elementary_reaction.h +include/antioch/eucken_thermal_conductivity.h +include/antioch/eucken_thermal_conductivity_building.h +include/antioch/falloff_reaction.h +include/antioch/falloff_threebody_reaction.h +include/antioch/gsl_spliner.h +include/antioch/gsl_spliner_impl.h +include/antioch/gsl_spliner_policy.h +include/antioch/gsl_spliner_shim.h +include/antioch/gsl_spliner_test_base.h +include/antioch/hercourtessen_rate.h +include/antioch/ideal_gas_micro_thermo.h +include/antioch/input_utils.h +include/antioch/insi.h +include/antioch/kinetics_conditions.h +include/antioch/kinetics_enum.h +include/antioch/kinetics_evaluator.h +include/antioch/kinetics_parsing.h +include/antioch/kinetics_theory_thermal_conductivity.h +include/antioch/kinetics_theory_thermal_conductivity_building.h +include/antioch/kinetics_theory_viscosity.h +include/antioch/kinetics_theory_viscosity_building.h +include/antioch/kinetics_type.h +include/antioch/kooij_rate.h +include/antioch/lennard_jones_potential.h +include/antioch/lindemann_falloff.h +include/antioch/macro_micro_thermo_base.h +include/antioch/math_constants.h +include/antioch/metaphysicl_utils.h +include/antioch/metaphysicl_utils_decl.h +include/antioch/metaprogramming.h +include/antioch/metaprogramming_decl.h +include/antioch/mixture_averaged_transport_evaluator.h +include/antioch/mixture_averaged_transport_mixture.h +include/antioch/mixture_conductivity.h +include/antioch/mixture_diffusion.h +include/antioch/mixture_transport_base.h +include/antioch/mixture_viscosity.h +include/antioch/molecular_binary_diffusion.h +include/antioch/nasa7_curve_fit.h +include/antioch/nasa7_mixture_vector_test_base.h +include/antioch/nasa7_thermo_test_base.h +include/antioch/nasa9_curve_fit.h +include/antioch/nasa9_mixture_vector_test_base.h +include/antioch/nasa9_thermo_test_base.h +include/antioch/nasa_curve_fit_base.h +include/antioch/nasa_evaluator.h +include/antioch/nasa_mixture.h +include/antioch/nasa_mixture_ascii_parsing.h +include/antioch/nasa_mixture_parsing.h +include/antioch/nasa_mixture_parsing_instantiate_macro.h +include/antioch/nasa_test_helper.h +include/antioch/parser_base.h +include/antioch/parsing_enum.h +include/antioch/particle_flux.h +include/antioch/photochemical_rate.h +include/antioch/physical_constants.h +include/antioch/reaction.h +include/antioch/reaction_enum.h +include/antioch/reaction_parsing.h +include/antioch/reaction_rate_test_base.h +include/antioch/reaction_rate_vector_test_base.h +include/antioch/reaction_set.h +include/antioch/read_reaction_set_data.h +include/antioch/read_reaction_set_data_instantiate_macro.h +include/antioch/read_reaction_set_data_xml.h +include/antioch/rotational_relaxation.h +include/antioch/sigma_bin_converter.h +include/antioch/siprefix.h +include/antioch/species_conductivity_base.h +include/antioch/species_diffusion_base.h +include/antioch/species_parsing.h +include/antioch/species_parsing_instantiation_macro.h +include/antioch/species_viscosity_base.h +include/antioch/stat_mech_thermo.h +include/antioch/stockmayer_potential.h +include/antioch/string_utils.h +include/antioch/sutherland_parsing.h +include/antioch/sutherland_parsing_instantiate_macro.h +include/antioch/sutherland_viscosity.h +include/antioch/temp_cache.h +include/antioch/testing_utils.h +include/antioch/thermo_vector_test_base.h +include/antioch/threebody_reaction.h +include/antioch/tinyxml2.h +include/antioch/tinyxml2_imp.h +include/antioch/transport_mixture.h +include/antioch/transport_species.h +include/antioch/transport_species_ascii_parsing.h +include/antioch/transport_species_parsing.h +include/antioch/troe_falloff.h +include/antioch/unit_base.h +include/antioch/unit_defs.h +include/antioch/unit_store.h +include/antioch/units.h +include/antioch/valarray_utils.h +include/antioch/valarray_utils_decl.h +include/antioch/vanthoff_rate.h +include/antioch/vector_utils.h +include/antioch/vector_utils_decl.h +include/antioch/vexcl_utils.h +include/antioch/vexcl_utils_decl.h +include/antioch/wilke_evaluator.h +include/antioch/wilke_mixture.h +include/antioch/xml_parser.h +include/antioch/xml_parser_instantiation_macro.h +include/antioch_config.h +lib/libantioch.so +lib/libantioch.so.0 +lib/libantioch.so.0.0.0 +libdata/pkgconfig/antioch.pc +share/aclocal/antioch.m4 +%%DATADIR%%/default_files/antioch_default_blottner_coefficient.dat +%%DATADIR%%/default_files/antioch_default_chemical_mixture.dat +%%DATADIR%%/default_files/antioch_default_chemical_species.dat +%%DATADIR%%/default_files/antioch_default_electronic_data.dat +%%DATADIR%%/default_files/antioch_default_sutherland_coefficient.dat +%%DATADIR%%/default_files/antioch_default_thermo_data.dat +%%DATADIR%%/default_files/antioch_default_thermo_data_NASA7.dat +%%DATADIR%%/default_files/antioch_default_transport_species_data.dat +%%DATADIR%%/default_files/antioch_default_vibrational_data.dat +%%DATADIR%%/xml_inputs/gri30.xml +%%DATADIR%%/xml_inputs/nasa9_thermo.xml |