aboutsummaryrefslogtreecommitdiff
path: root/biology/artemis
Commit message (Collapse)AuthorAgeFilesLines
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
|
* Clean up after java/openjdk6 and java/openjdk6-jre removalJung-uk Kim2019-11-261-1/+0
| | | | | | | | | | | | | | | java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and java/openjdk6 and java/openjdk6-jre were removed from the ports tree (r512663). Now this patch completely removes remaining stuff from the ports tree. PR: 241953 (exp-run) Reviewed by: glewis Approved by: portmgr (antoine) Differential Revision: https://reviews.freebsd.org/D22342 Notes: svn path=/head/; revision=518482
* biology/artemis: Update 9 -> 17.0.1-11Yuri Victorovich2018-06-114-1719/+72
| | | | | | | | | | | | | | | | | Port changes: * Take maintainership * Change to github * Change to DISTVERSION * Add LICENSE * Depends on bash * Add USES=gmake * Remove NO_BUILD: needs to build jars from java files * Update the post-extract target * Change do-install to do minimal installation * Update WWW Notes: svn path=/head/; revision=472197
* Remove dead master sitesBaptiste Daroussin2017-10-131-2/+1
| | | | Notes: svn path=/head/; revision=451981
* - Fix shebangsDmitry Marakasov2017-04-211-3/+7
| | | | | | | | - Add NO_ARCH - Switch to relative links Notes: svn path=/head/; revision=439093
* ${RM} already has -f.Mathieu Arnold2016-10-211-1/+1
| | | | | | | | | | PR: 213570 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=424411
* - Add empty directory to plistDmitry Marakasov2015-03-111-0/+1
| | | | Notes: svn path=/head/; revision=380989
* Cleanup plistBaptiste Daroussin2014-10-201-31/+0
| | | | Notes: svn path=/head/; revision=371237
* Support stageBaptiste Daroussin2014-01-201-6/+5
| | | | Notes: svn path=/head/; revision=340486
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* Decommissioning java 1.5 (EOLed since October 2009):Baptiste Daroussin2012-12-101-1/+1
| | | | | | | suppress any reference to USE_JAVA= 1.5+ (part1) Notes: svn path=/head/; revision=308600
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-10-011-6/+2
| | | | Notes: svn path=/head/; revision=305130
* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,Mark Linimon2011-07-211-1/+1
| | | | | | | | | | | | | | | | | | | remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5 or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM is also removed, as it is not available in Java 1.5 and higher. Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5. While here, replace static values of JAVA_VERSION in files/*.in by %%JAVA_VERSION%% . PR: ports/158969 Submitted by: rene Tested on: pointyhat-west -exp Notes: svn path=/head/; revision=278068
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* Bump portrevision due to upgrade of devel/gettext.Edwin Groothuis2008-06-061-0/+1
| | | | | | | | | | | | | The affected ports are the ones with gettext as a run-dependency according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT in Makefile (29 of them). PR: ports/124340 Submitted by: edwin@ Approved by: portmgr (pav) Notes: svn path=/head/; revision=214428
* - Update to version 9Rong-En Fan2007-07-083-1313/+1505
| | | | | | | | | | | | - Don't install CVS directories which are going to be removed in next release PR: ports/113831 Submitted by: Thomas Abthorpe <thomas at goodking.ca> Approved by: maintainer timeout (20 days) Notes: svn path=/head/; revision=195215
* BROKEN: UnfetchableKris Kennaway2007-05-261-0/+2
| | | | Notes: svn path=/head/; revision=191940
* - Welcome X.org 7.2 \o/.Florent Thoumie2007-05-192-4/+4
| | | | | | | | - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}. Notes: svn path=/head/; revision=191544
* - Fix fetch problemsTim Bishop2005-12-052-3/+5
| | | | | | | | | PR: 89971 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: clement (mentor) Notes: svn path=/head/; revision=150478
* Update to version 7Herve Quiroz2005-09-203-47/+160
| | | | | | | | | PR: 86196 Submitted by: Tony Maher <anthony.maher@uts.edu.au> Approved by: maintainer Notes: svn path=/head/; revision=143213
* - Add 'java' categoryHerve Quiroz2005-03-201-2/+1
| | | | | | | | | | - Remove incorrect (and unneeded) JAVA_RUN statement PR: 78761 Submitted by: me Notes: svn path=/head/; revision=131726
* - Update to version 6Sergey Matveychuk2005-03-124-1505/+1529
| | | | | | | | | | | - Pass maintainership to submitter PR: ports/76219 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout (2 monthes) Notes: svn path=/head/; revision=130959
* SIZEify (maintainer timeout)Trevor Johnson2004-03-311-0/+1
| | | | Notes: svn path=/head/; revision=105747
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.Joe Marcus Clarke2004-02-041-0/+1
| | | | | | | (Part 2) Notes: svn path=/head/; revision=99920
* De-pkg-comment.Akinori MUSHA2003-02-212-1/+1
| | | | Notes: svn path=/head/; revision=76030
* Initial import of artemis 4.0Kevin Lo2001-12-225-0/+1528
Artemis is a DNA sequence viewer and annotation tool. PR: 32914 Submitted by: Camson <chuynh@biolateral.com.au> Notes: svn path=/head/; revision=51988