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* biology/diamond: Update to 2.0.15Joseph Mingrone2022-04-242-4/+4
| | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.15 Sponsored by: The FreeBSD Foundation
* biology/diamond: Update to 2.0.14Joseph Mingrone2022-01-132-4/+4
| | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.14 Sponsored by: The FreeBSD Foundation
* biology/diamond: Update to 2.0.13Joseph Mingrone2021-11-112-4/+4
| | | | | This update fixes a bug that caused invalid bit scores in frameshift alignment mode.
* biology/diamond: Update to 2.0.12Joseph Mingrone2021-10-122-5/+4
| | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.12
* biology/diamond: enable on powerpc64lePiotr Kubaj2021-10-091-1/+1
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* biology/diamond: enable on powerpc64Piotr Kubaj2021-10-081-1/+1
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* biology/diamond: Enable on aarch64.Mikael Urankar2021-10-081-1/+1
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* biology/diamond: Update to 2.0.11-1Joseph Mingrone2021-07-062-4/+5
| | | | | | Includes a build fix for 2.0.11 on FreeBSD https://github.com/bbuchfink/diamond/releases/tag/v2.0.11
* biology/diamond: Update to 2.0.10Joseph Mingrone2021-07-032-4/+4
| | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.10
* biology/diamond: Update to 2.0.9Joseph Mingrone2021-04-132-4/+4
| | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.9
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/diamond: Update to 2.0.8Joseph Mingrone2021-03-112-4/+4
| | | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.8 Notes: svn path=/head/; revision=568088
* biology/diamond: Update to 2.0.7Joseph Mingrone2021-02-172-4/+4
| | | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.7 Notes: svn path=/head/; revision=565520
* biology/diamond: Update to version 2.0.6Joseph Mingrone2020-12-202-4/+4
| | | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.6 Notes: svn path=/head/; revision=558772
* biology/diamond: Update to version 2.0.5Joseph Mingrone2020-12-012-4/+4
| | | | | | | https://github.com/bbuchfink/diamond/releases/tag/v2.0.5 Notes: svn path=/head/; revision=556797
* biology/diamond: Update to version 2.0.4Joseph Mingrone2020-08-303-49/+4
| | | | | | | | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v2.0.3 https://github.com/bbuchfink/diamond/releases/tag/v2.0.4 Port changes: Remove a patch that was upstreamed: https://github.com/bbuchfink/diamond/pull/378 Notes: svn path=/head/; revision=547066
* biology/diamond: Update to version 2.0.2Joseph Mingrone2020-08-073-4/+49
| | | | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v2.0.1 https://github.com/bbuchfink/diamond/releases/tag/v2.0.2 Notes: svn path=/head/; revision=544321
* biology/diamond: Update to version 2.0.0Joseph Mingrone2020-07-283-14/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v2.0.0 Notes: svn path=/head/; revision=543567
* biology/diamond: Update to version 0.9.36Joseph Mingrone2020-07-033-4/+14
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.36 Notes: svn path=/head/; revision=541097
* biology/diamond: Update to version 0.9.35Joseph Mingrone2020-06-272-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.35 Notes: svn path=/head/; revision=540624
* biology/diamond: Update to version 0.9.34Joseph Mingrone2020-06-122-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.34 Notes: svn path=/head/; revision=538606
* biology/diamond: Update to version 0.9.33Joseph Mingrone2020-06-032-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.33 Notes: svn path=/head/; revision=537853
* biology/diamond: Update to version 0.9.32Joseph Mingrone2020-04-242-5/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.32 Notes: svn path=/head/; revision=532906
* biology/diamond: Update to version 0.9.31.2Joseph Mingrone2020-03-212-4/+5
| | | | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.31 Also include two additional commits that fix a build error. Notes: svn path=/head/; revision=528881
* biology/diamond: Update to version 0.9.30Joseph Mingrone2020-02-032-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.30 Notes: svn path=/head/; revision=525045
* biology/diamond: Update to v0.9.29Joseph Mingrone2019-11-202-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.29 Notes: svn path=/head/; revision=518039
* biology/diamond: Update to version 0.9.28Joseph Mingrone2019-11-073-13/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.28 Notes: svn path=/head/; revision=516974
* biology/diamond: Update to version 0.9.27 (plus one fix)Joseph Mingrone2019-11-032-7/+5
| | | | | | | | | | Since compiling from source no longer performs a native build, remove -mtune=generic from CLFAGS when package building. Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.27 Notes: svn path=/head/; revision=516379
* biology/diamond: Update to version 0.9.26Joseph Mingrone2019-09-182-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.26 Notes: svn path=/head/; revision=512282
* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-131-4/+6
| | | | Notes: svn path=/head/; revision=508834
* biology/diamond: Update to version 0.9.25Joseph Mingrone2019-08-042-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.25 Notes: svn path=/head/; revision=508134
* biology/diamond: Update to version 0.9.24Joseph Mingrone2018-12-314-27/+12
| | | | | | | | | | Port changes: Tune for package building based on the author's recommendation. Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.24 Notes: svn path=/head/; revision=488819
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-251-1/+1
| | | | | | | | | | | | | | Ports that build out of source now simply can use "USES=cmake" instead of "USES=cmake:outsource". Ports that fail to build out of source now need to specify "USES=cmake:insource". I tried to only set insource where explictely needed. PR: 232038 Exp-run by: antoine Notes: svn path=/head/; revision=488341
* biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone2018-12-173-10/+11
| | | | | | | | | | | | Also: - update license since upstream changed to GPLv3 - only build/package for amd64, since it is untested on other architectures and currently does not build on i386 Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.23 Notes: svn path=/head/; revision=487707
* biology/diamond: Update to version 0.9.22Joseph Mingrone2018-05-142-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.22 Notes: svn path=/head/; revision=469925
* biology/diamond: Update to version 0.9.21Joseph Mingrone2018-04-202-5/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases Notes: svn path=/head/; revision=467847
* biology/diamond: Update to version 0.9.19Joseph Mingrone2018-03-172-5/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.19 Notes: svn path=/head/; revision=464826
* biology/diamond: Update to version 0.9.18-49Joseph Mingrone2018-03-152-4/+5
| | | | | | | | | Pull in commits after the 0.9.18 release for build fixes. Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.18 Notes: svn path=/head/; revision=464549
* biology/diamond: Update to version 0.9.17Joseph Mingrone2018-02-012-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.17 Notes: svn path=/head/; revision=460624
* biology/diamond: Update to version 0.9.14Joseph Mingrone2017-12-132-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.14 Notes: svn path=/head/; revision=456220
* biology/diamond: Update to version 0.9.13Joseph Mingrone2017-11-172-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.13 Notes: svn path=/head/; revision=454383
* biology/diamond: Update to version 0.9.12Joseph Mingrone2017-11-082-7/+5
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.12 Notes: svn path=/head/; revision=453752
* biology/diamond: Update to 0.9.11Joseph Mingrone2017-11-033-10/+14
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases Notes: svn path=/head/; revision=453387
* biology/diamond: Update to version 0.9.10Joseph Mingrone2017-08-152-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.10 Notes: svn path=/head/; revision=448009
* biology/diamond: Update to version 0.9.9Joseph Mingrone2017-07-032-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.9 Notes: svn path=/head/; revision=444981
* biology/diamond: Update to version 0.9.8Joseph Mingrone2017-06-162-4/+4
| | | | Notes: svn path=/head/; revision=443706
* biology/diamond: Update to version 0.9.4Joseph Mingrone2017-06-032-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.4 Notes: svn path=/head/; revision=442478
* biology/diamond: Update to version 0.9.3Joseph Mingrone2017-05-292-4/+4
| | | | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases Approved by: swills (mentor, implicit) Notes: svn path=/head/; revision=441991
* biology/diamond: Update to version 0.9.1Joseph Mingrone2017-05-232-6/+6
| | | | | | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases - License has changed to AGPLv3 Approved by: swills (mentor, implicit) Notes: svn path=/head/; revision=441513
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