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* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakJohn Marino2014-03-022-3/+8
| | | | | | | | | | | | | | Fasta3 distfile was significantly changed. This should have been released as a new version (e.g. 36.3.6e), so it's not clear why the distfile was rerolled. There are significant changes to makefiles, conf files and even a few .c and .h files. They all look like legitimate updates to me though. Set DIST_SUBDIR since this port is now known for rerolling, then regenerate distinfo. Also add Fasta license and bump revision. Notes: svn path=/head/; revision=346755
* Mark as broken: Invalid checksum, seems like the software was rerolledBaptiste Daroussin2014-01-031-0/+2
| | | | Notes: svn path=/head/; revision=338577
* Update to version 36.3.6dPawel Pekala2013-10-295-93/+114
| | | | | | | | PR: ports/181883 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=331982
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Use single space after WWW:Sunpoet Po-Chuan Hsieh2013-09-071-1/+1
| | | | Notes: svn path=/head/; revision=326658
* - Update to 36.3.6Wen Heping2013-07-195-23/+30
| | | | | | | - Drop maintainership Notes: svn path=/head/; revision=323293
* - Take maintainershipWen Heping2012-10-011-1/+1
| | | | Notes: svn path=/head/; revision=305131
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-10-011-7/+2
| | | | Notes: svn path=/head/; revision=305130
* - remove maintainer tags from pkg-descrEitan Adler2011-10-221-2/+0
| | | | | | | | Approved by: portmgr Approved by: bapt (mentor) Notes: svn path=/head/; revision=284139
* - Update to 36.3.2 to fix distfile fetching on pointyhatBeat Gaetzi2011-01-263-16/+13
| | | | | | | | | PR: ports/154267 Submitted by: Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer) Feature safe: yes Notes: svn path=/head/; revision=268272
* Update to 35.4.9Max Brazhnikov2009-08-232-4/+4
| | | | | | | | PR: ports/137991 Submitted by: Fernan Aguero (maintainer) Notes: svn path=/head/; revision=240189
* - Update to 35.4.7 [1]Ion-Mihai Tetcu2009-06-094-8/+27
| | | | | | | | | | - Obey PREFIX [2] Submitted by: maintainer [1] [2] Reported by: QATty [2] Notes: svn path=/head/; revision=235478
* - Add forgotten patchDmitry Marakasov2009-02-231-0/+11
| | | | Notes: svn path=/head/; revision=228919
* - Update to 35.4.4Dmitry Marakasov2009-02-233-25/+47
| | | | | | | | PR: 132007 Submitted by: Fernan Aguero <fernan at iib dot unsam dot edu dot ar> (maintainer) Notes: svn path=/head/; revision=228918
* - Update to 35.3.6Cheng-Lung Sung2008-04-102-5/+5
| | | | | | | | PR: ports/122607 Submitted by: maintainer (Fernan Aguero) Notes: svn path=/head/; revision=210980
* - Update to 35.3.5Rong-En Fan2008-03-303-53/+49
| | | | | | | | | | | | | - Switch to .tar.gz distfile so that we don't define our do-extract - While I'm here, using substitution for version numbers in pkg-plist for easier upgrade PR: ports/121690 Submitted by: Wen heping <wenheping at gmail.com> Approved by: maintainer timeout (2 weeks) Notes: svn path=/head/; revision=210155
* - Update to 34.26.2Martin Wilke2007-03-092-8/+6
| | | | | | | | PR: 110079 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=186993
* - Update to 34.t26.b3Martin Wilke2006-10-313-4/+7
| | | | | | | | PR: ports/104508 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=175755
* - Update to 34.t25.d9Pav Lucistnik2006-06-092-5/+5
| | | | | | | | PR: ports/98761 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=164922
* - Update to 34.t25.d8 [1]Erwin Lansing2006-06-052-5/+5
| | | | | | | | | | | - While I'm here, pet portlint [2] PR: 98398 [1] Submitted by: miwi [1], self [2] Approved by: maintainer [1] Notes: svn path=/head/; revision=164525
* - update to 34.t25.d7Sergey Matveychuk2006-05-243-77/+7
| | | | | | | | | | - add MASTER_SITE_LOCAL as a second master site PR: ports/97310 Submitted by: maintainer Notes: svn path=/head/; revision=163293
* BROKEN: UnfetchableKris Kennaway2006-05-211-0/+2
| | | | Notes: svn path=/head/; revision=163002
* - Update to 34.t25.d6Sergey Matveychuk2006-05-074-38/+80
| | | | | | | | PR: ports/96063 Submitted by: maintainer Notes: svn path=/head/; revision=161621
* - Update to 34.t25.d5Pav Lucistnik2006-03-202-4/+4
| | | | | | | | PR: ports/94741 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=157817
* Update to 34.t25.d4.Sam Lawrance2006-02-1011-167/+155
| | | | | | | | PR: ports/93052 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=155633
* SHA256ifyEdwin Groothuis2006-01-221-0/+1
| | | | | | | Approved by: krion@ Notes: svn path=/head/; revision=154141
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of aMark Linimon2004-07-012-8/+4
| | | | | | | | | | | | logfile, one Linux-only change, and one change in a test script). Assign submitter as new maintainer as current one has not responded to PRs for some time. PR: ports/68199 Submitted by: Fernan Aguero <fernan at iib dot unsam dot edu dot ar> Notes: svn path=/head/; revision=112639
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENKris Kennaway2004-06-211-0/+2
| | | | | | | | ports. They will be removed on or after that date if they are still broken and no fix has been submitted to GNATS. Notes: svn path=/head/; revision=111956
* SIZEify (maintainer timeout)Trevor Johnson2004-03-311-0/+1
| | | | Notes: svn path=/head/; revision=105747
* BROKEN: Checksum mismatchKris Kennaway2004-02-211-0/+2
| | | | Notes: svn path=/head/; revision=101589
* unPERLify by using REINPLACE_CMD and SED where appropriate.Joe Marcus Clarke2003-11-151-1/+1
| | | | | | | | PR: 47654 Submitted by: Simon 'portlint' Schubert <corecode@corecode.ath.cx> Notes: svn path=/head/; revision=94047
* Cosmetic fix: use %%DOCSDIR%% macro.Sergey A. Osokin2003-10-221-20/+20
| | | | | | | | | | No functionally changes. Submitted by: Oleg Karachevtsev <ok@etrust.ru> A part of PR: 57992 Notes: svn path=/head/; revision=91882
* Clear moonlight beckons.Ade Lovett2003-03-072-1/+1
| | | | | | | | | | Requiem mors pacem pkg-comment, And be calm ports tree. E Nomini Patri, E Fili, E Spiritu Sancti. Notes: svn path=/head/; revision=77045
* Prefer <limits.h> over <values.h> as the latter has been removed fromKris Kennaway2002-08-234-0/+44
| | | | | | | | | -current. Noticed by: bento Notes: svn path=/head/; revision=64853
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.Johann Visagie2001-07-031-1/+1
| | | | | | | | PR: 28666 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44684
* Updating my email address in my remaining ports.Johann Visagie2001-06-271-1/+1
| | | | | | | Prompted by: vanilla Notes: svn path=/head/; revision=44495
* Updata biology/fasta3 to version 33.t08.d4James E. Housley2001-05-073-8/+8
| | | | | | | | PR: 27176 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=42359
* Update to 33.t08.d3.Maxim Sobolev2001-03-223-4/+3
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=40193
* - A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner2001-03-122-1/+2
| | | | | | | | | | - Bumped PORTREVISION. Submitted by: Johann Visagie <johann@egenetics.com> PR: 25725 Notes: svn path=/head/; revision=39638
* update to 33.t08.d2.FUJISHIMA Satsuki2001-03-082-2/+2
| | | | | | | | PR: 25609 Submitted by: maintainer Notes: svn path=/head/; revision=39262
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-118-0/+203
protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38207
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