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* *: Bump PORTREVISIONs for math/mpc update to 1.3.1Gerald Pfeifer2023-04-231-1/+1
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* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* biology/gcta: Use bundled version of eigen3Yuri Victorovich2022-07-062-6/+14
| | | | | | | | | | | | ... in preparation to upgrading math/eigen to 3.4.0. This version of gcta (1.26.0) doesn't support eigen-3.4.0, and it can't be upgraded because latest versions of gcta use Intel's closed source MKL library. PR: 265032 Suggested by: tcberner@ Approved by: portmgr (interoperability)
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/gcta: Drop dependency on gccJason W. Bacon2021-01-111-10/+4
| | | | | | | | | | | Replace compiler:openmp with compiler:c++11-lang Clang build also requires localbase:ldflags Build tested on amd64, i386 and powerpc64 12.x-RELEASE PR: port/247753, ports/252379 Notes: svn path=/head/; revision=561231
* - Upgrade math/eigen3 to 3.3.8;Thierry Thomas2020-12-121-1/+1
| | | | | | | | | | | | | - Add some dependencies which might be detected by Find_Package but not registered; - Bump PORTREVISION of consumers. PR: 250833 Submitted by: /me Approved by: tcberner@ (KDE / maintainer) + exp-run Notes: svn path=/head/; revision=557839
* biology/gcta: Switch eigen3 dep to USES frameworkJason W. Bacon2020-11-081-2/+1
| | | | | | | | PR: ports/250949 Reported by: lbartoletti Notes: svn path=/head/; revision=554467
* Bump 46 ports depending on math/openblas because the after the recent ↵Yuri Victorovich2020-05-061-0/+1
| | | | | | | math/openblas update the library name changed in openblas. Notes: svn path=/head/; revision=534185
* biology/gcta: Genome-wide Complex Trait AnalysisJason W. Bacon2020-04-158-0/+217
GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits. Notes: svn path=/head/; revision=531770