aboutsummaryrefslogtreecommitdiff
path: root/biology/htslib/files
Commit message (Collapse)AuthorAgeFilesLines
* htslib: Update to 1.13Jason W. Bacon2021-07-121-10/+0
| | | | | | Numerous enhancements and bug fixes Changes: https://github.com/samtools/htslib/releases/tag/1.13
* biology/htslib: Update to 1.12Jason W. Bacon2021-03-203-48/+4
| | | | | | | | | | | | | | biology/samtools: Update to 1.12 biology/bcftools: Update to 1.12 Numerous enhancements, performance improvements, and bug fixes since 1.11 Build-tested all other htslib dependents, no revbumps should be needed Reported by: portscout Notes: svn path=/head/; revision=568874
* biology/htslib: Upgrade to 1.11.0Jason W. Bacon2020-11-054-98/+45
| | | | | | | | | | Numerous bug fixes, new features and performance improvements since 1.10 https://github.com/samtools/htslib/releases/tag/1.11 Reported by: portscout Notes: svn path=/head/; revision=554155
* biology/htslib: Upgrade to 1.10.2Jason W. Bacon2020-08-032-26/+93
| | | | | | | | | | | | Numerous bug fixes and enhancements since 1.9: https://github.com/samtools/htslib/tags Bump PORTREVISION on dependents that don't require additional patching PR: 248089 Notes: svn path=/head/; revision=544090
* biology/htslib biology/bcftools biology/samtools: Update to 1.6Luca Pizzamiglio2017-10-253-39/+32
| | | | | | | | | | | PR: 223094 Submitted by: mzaki@niid.go.jp Approved by: cartwright@asu.edu (maintainer) Approved by: olivier (mentor) Differential Revision: https://reviews.freebsd.org/D12768 Notes: svn path=/head/; revision=452840
* Use USES=pathfix where applicable.Mathieu Arnold2016-10-211-7/+7
| | | | | | | | | | | PR: 213195 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D8093 Notes: svn path=/head/; revision=424427
* biology/htslib: Replace FreeBSD-specific fix with a generic oneJohn Marino2015-12-291-5/+4
| | | | | | | | | | This port will not build if ENOTRECOVERABLE is not defined, period. It's not necessary to check OPSYS and version, just apply the fallback definition if it's not defined. This unbreaks DragonFly after last commit. Notes: svn path=/head/; revision=404749
* biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3Jason Unovitch2015-12-254-26/+29
| | | | | | | | | | | | | | | | - Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require version 1.3 of htslib. - Add CURL option to htslib - Add TEST_TARGET with perl and bash dependencies for testing - Tidy up spacing and pkg-message's PR: 205524 PR: 205525 PR: 205526 Submitted by: cartwright@asu.edu (maintainer) Notes: svn path=/head/; revision=404398
* biology/htslib: update 1.1 -> 1.2.1Bartek Rutkowski2015-03-063-19/+33
| | | | | | | | PR: 198291 Submitted by: Reed Cartwright <cartwright@asu.edu> Notes: svn path=/head/; revision=380596
* HTSlib is an implementation of a unified C library for accessing common filePawel Pekala2014-12-141-0/+64
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu> Notes: svn path=/head/; revision=374729
generated by cgit v1.2.3 (git 2.25.1) at 2024-10-04 18:37:58 +0000