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* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-0/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* biology/molden: update to 5.8.2Johannes M Dieterich2018-11-133-10/+45
| | | | | | | | | | Also add do-install-{option}-on targets and shadow ${MKDIR} commands. PR: 233060 Submitted by: yuri Notes: svn path=/head/; revision=484858
* biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich2018-11-071-1/+2
| | | | | | | | | | Add $(LDFLAGS) to makefile. While here, add USES=gl. Approved by: portmgr Notes: svn path=/head/; revision=484371
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-291-1/+1
| | | | | | | | | | | | | | | | | in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default. This includes ports - featuring USE_GCC=yes or USE_GCC=any, - featuring USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and those - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x, c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib. PR: 222542 Notes: svn path=/head/; revision=475857
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-201-2/+1
| | | | | | | The upstream keeps changing the URL. Notes: svn path=/head/; revision=475001
* Mark BROKEN: unfetchaableAntoine Brodin2018-07-201-0/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=474994
* biology/molden: Unbreak by updating the MASTER_SITES URLYuri Victorovich2018-07-131-2/+1
| | | | Notes: svn path=/head/; revision=474570
* Mark BROKEN: unfetchableAntoine Brodin2018-07-131-0/+1
| | | | | | | | Reported by: pkg-fallout MFH: 2018Q3 Notes: svn path=/head/; revision=474562
* biolog/molden: unbreak after at least two intransparent distfile updatesJohannes M Dieterich2018-05-202-6/+4
| | | | | | | | | Reviewed by: zeising (mentor) Approved by: zeising (mentor) Differential Revision: https://reviews.freebsd.org/D15333 Notes: svn path=/head/; revision=470488
* Mark BROKEN: checksum and size mismatchAntoine Brodin2018-05-071-0/+2
| | | | | | | | Reported by: pkg-fallout MFH: 2018Q2 Notes: svn path=/head/; revision=469265
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-1/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* biology/molden: chase another intransparent upstream distfile upgrade.Johannes M Dieterich2017-11-012-4/+4
| | | | | | | | | Reviewed by: swills (mentor), mat Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12829 Notes: svn path=/head/; revision=453261
* biology/molden: unbreak by chasing latest intransparent distfile update.Johannes M Dieterich2017-09-282-4/+4
| | | | | | | | | Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D12521 Notes: svn path=/head/; revision=450799
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-101-1/+1
| | | | | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275 Notes: svn path=/head/; revision=449591
* Chase next distfile update. Upstream contacted whether we would be allowed ↵Johannes M Dieterich2017-07-132-4/+4
| | | | | | | | | | | to host a distfile copy. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D11586 Notes: svn path=/head/; revision=445717
* biology/molden: Unbreak by chasing their latest opaque update to the ↵Johannes M Dieterich2017-07-122-7/+5
| | | | | | | | | | | distribution. Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D11338 Notes: svn path=/head/; revision=445570
* Mark BROKEN.Mathieu Arnold2017-06-221-0/+2
| | | | | | | | | | | => Attempting to fetch ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz fetch: ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz: size mismatch: expected 5339411, actual 5339467 => Couldn't fetch it - please try to retrieve this Sponsored by: Absolight Notes: svn path=/head/; revision=444104
* Previous commit unbroke the port.Mark Linimon2017-06-031-2/+0
| | | | | | | Reported by: xmj Notes: svn path=/head/; revision=442480
* biology/molden: Chase recent upstream change of molden distfile.Johannes M Dieterich2017-05-242-4/+4
| | | | | | | | | Reviewed by: swills (mentor) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10864 Notes: svn path=/head/; revision=441560
* Revision bump of all ports with USE_GL after consolidation of mesa-libsMatthew Rezny2017-05-231-1/+1
| | | | | | | | Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D10845 Notes: svn path=/head/; revision=441503
* Mark BROKEN: checksum and size mismatchAntoine Brodin2017-05-191-0/+2
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=441258
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andGerald Pfeifer2017-04-011-1/+1
| | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707 Notes: svn path=/head/; revision=437439
* biology/molden: Unbreak port, regenerate checksums, increment PORTREVISION.Johannes M Dieterich2017-02-112-7/+5
| | | | | | | | | Reviewed by: swills (mentor), pi (former maintainer) Approved by: swills (mentor), pi (former maintainer) Differential Revision: https://reviews.freebsd.org/D9501 Notes: svn path=/head/; revision=433832
* - Mark BROKEN: does not fetch, size/checksum mismatchDmitry Marakasov2017-02-071-0/+2
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=433554
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer2016-12-071-1/+1
| | | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II. The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. This adds ports with USES=fortran and ports using Mk/bsd.octave.mk which in turn has USES=fortran. PR: 214965 Reported by: thierry Notes: svn path=/head/; revision=428057
* biology/molden: distfile was updated in xwin.cKurt Jaeger2016-12-032-4/+4
| | | | Notes: svn path=/head/; revision=427627
* biology/molden: add missing LICENSE_NAMEKurt Jaeger2016-11-101-1/+2
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=425830
* biology/molden: fix distinfo, set LICENSEKurt Jaeger2016-11-092-7/+11
| | | | | | | | | Submitted by: marino Reported by: Eduardo Lemos de Sa <eduardo.lemosdesa@gmail.com> MFH: 2016Q4 Notes: svn path=/head/; revision=425806
* Mark BROKEN: unfetchable, size mismatchAntoine Brodin2016-10-011-0/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=423039
* biology/molden: 5.4 -> 5.7Kurt Jaeger2016-08-262-6/+4
| | | | | | | | | | | | | - Adds editable text fields that are longer than the visible string and introduces a new way of selecting a range of amino acids. - introduces interfaces to the open source packages openbabel and pharmer. Openbabel is used to create 2D images of the molecules in a .sdf file. It is also used to do 2D fingerprint searching. Pharmer is used to pharmacophore (3D) searching against indexed databases of .sdf files. Notes: svn path=/head/; revision=420890
* - Mark BROKEN: does not fetch (distfile was removed from ftp)Dmitry Marakasov2016-08-221-0/+2
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=420601
* - Fix trailing whitespace in pkg-descrs, categories [a-f]*Dmitry Marakasov2016-05-191-1/+1
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=415498
* biology/molden: updated distfile, take maintainerKurt Jaeger2016-01-202-4/+4
| | | | | | | | | - upstream distfile is moving target with same version number Submitted by: antoine Notes: svn path=/head/; revision=406795
* Mark BROKEN: checksum and size mismatchAntoine Brodin2016-01-201-0/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=406791
* biology/molden: 5.0.7 -> 5.4Kurt Jaeger2016-01-185-192/+799
| | | | | | | | | | | | | | | | | Changes: - Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally. - Pdb files can now be clipped. - Fixes missing residues. Introduces an alternative way of generating rotamers, without using z-matrices. This potentially a faster algorithm. - Supports Movie making through avconv/ffmpeg. - calculates the Electron Localization Function (ELF). - Updated code of ambfor/ambmd to speed up optimisations/MD of proteins solvated in water (Jan, 2014). PR: 204341 Notes: svn path=/head/; revision=406605
* Update the default version of GCC in the Ports Collection from GCC 4.7.4Gerald Pfeifer2014-09-101-1/+1
| | | | | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit) Notes: svn path=/head/; revision=367888
* Catch a couple of missing convertsion to :tu/:tlBaptiste Daroussin2014-05-051-1/+1
| | | | | | | | Submitted by: ak With hat: portmgr Notes: svn path=/head/; revision=352993
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-101-0/+1
| | | | | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs) Notes: svn path=/head/; revision=347809
* - Update to 5.0.7Martin Wilke2014-02-272-24/+21
| | | | | | | | PR: 185942 Submitted by: ports fury Notes: svn path=/head/; revision=346271
* - USES=fortran gmake.Tijl Coosemans2013-12-292-16/+15
| | | | | | | | | | - Add dependency on xproto. - Fix build with new CFLAGS. - Staging. - New WWW. Notes: svn path=/head/; revision=337992
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-261-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=331644
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Update to 5.0.6Martin Wilke2013-04-262-3/+3
| | | | | | | | PR: 178032 Submitted by: Ports Fury Notes: svn path=/head/; revision=316578
* Update to 5.0.4Eitan Adler2012-12-142-3/+3
| | | | Notes: svn path=/head/; revision=308917
* - Update to version 5.0.2Armin Pirkovitsch2012-11-307-275/+79
| | | | | | | | | | | | | - Add MAKE_JOBS_UNSAFE - Convert to optionsng PR: ports/171970 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes Notes: svn path=/head/; revision=308042
* Mea culpa, s/Whom/Created by/Alexey Dokuchaev2012-09-231-1/+1
| | | | Notes: svn path=/head/; revision=304749
* - Adjust "Created by" tag to include more complete submitter's informationAlexey Dokuchaev2012-09-231-5/+4
| | | | | | | | - Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite article from COMMENT where appropriate Notes: svn path=/head/; revision=304748
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-09-221-6/+2
| | | | Notes: svn path=/head/; revision=304686
* Switch from libglut to freeglut and retire libglut. Libglut hasn't beenKoop Mast2012-08-041-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | developed in years and has been dropped from the MESA 8.0 distribution. Freeglut is a rewrite of glut and is actively developed and is used by many linux distributions instead of libglut. Bump all ports that directly depend on libglut because of the shlib version change. There are some extra items in this patch. *) Because freeglut doesn't have the same dependancies as libglut, some ports need extra dependencies added to USE_XORG to make them build. *) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped with libglut. *) Remove option for libglut/freeglut selection in games/cake, only freeglut remains now. *) While here fix a png related build issue games/vegastrike. Thanks to miwi for running the exp-run. Approved by: portmgr (miwi) Collaboration with: zeising@ Obtained from: xorg-dev staging area. Notes: svn path=/head/; revision=302037
* The vast majority of pkg-descr files had the following format when theyDoug Barton2011-10-241-4/+1
| | | | | | | | | | | | | | | | | | | had both lines: Author: ... WWW: .... So standardize on that, and move them to the end of the file when necessary. Also fix some more whitespace, and remove more "signature tags" of varying forms, like -- name, etc. s/AUTHOR/Author/ A few other various formatting issues Notes: svn path=/head/; revision=284239
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