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* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-12-111-1/+1
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* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-10-061-1/+1
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* all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik2022-09-081-1/+1
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* Remove WWW entries moved into port MakefilesStefan Eßer2022-09-071-2/+0
| | | | | | | | | | Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)
* Add WWW entries to port MakefilesStefan Eßer2022-09-071-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
* cleanup: remove trailing whitepacesTobias C. Berner2022-09-071-1/+1
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* all: Bump PORTREVISION after Go updateDmitri Goutnik2022-08-031-1/+1
| | | | Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update.
* all: Bump PORTREVISION after lang/go{117,118} updateDmitri Goutnik2022-07-141-1/+1
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* */*: Bump port revisons after lang/go{117,118} updateDmitri Goutnik2022-06-071-1/+1
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* */*: Repair after switching to versioned Go portsDmitri Goutnik2022-06-061-1/+1
| | | | | | | | | | - Add 1.17 to USES=go for ports that still need go117, remove GO_PORT; - Add missing ${SETENV} ${MAKE_ENV} to repair BINARY_ALIAS; - Remove explicit dependencies on lang/go. PR: 264336 Reviewed by: ygy jwb yuri mikael drtr0jan@yandex.ru decke mat Differential Revision: https://reviews.freebsd.org/D35346
* */*: Bump PORTREVISION after lang/go 1.18 updateGuangyuan Yang2022-03-301-1/+1
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* Update CONFLICTS definitions in categories a* to c*Stefan Eßer2022-02-061-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Update the CONFLICTS definitions of ports in the following categories: - accessibility - archivers - audio - benchmarks - biology - cad - chinese - comms - converters An attempt has been made to use generic conflicts patterns that do not have to be updated whenever a new version of a conflicting port is added to the ports system. There is a misunderstanding that the port being built/installed has to be omitted from the conflicts pattern. This is not true - the port being built is implicitly non-conflicting due to logic in bsd.port.mk. Approved by: portmgr (implicit)
* Fix CONFLICTS entries of multiple portsStefan Eßer2022-01-101-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | There have been lots of missing CONFLICTS_INSTALL entries, either because conflicting ports were added without updating existing ports, due to name changes of generated packages, due to mis-understanding the format and semantics of the conflicts entries, or just due to typoes in package names. This patch is the result of a comparison of all files contained in the official packages with each other. This comparison was based on packages built with default options and may therefore have missed further conflicts with optionally installed files. Where possible, version numbers in conflicts entries have been generalized, some times taking advantage of the fact that a port cannot conflict with itself (due to logic in bsd.port.mk that supresses the pattern match result in that case). A few ports that set the conflicts variables depending on complex conditions (e.g. port options), have been left unmodified, despite probably containing outdated package names. These changes should only affect the installation of locally built ports, not the package building with poudriere. They should give an early indication of the install conflict in cases where currently the pkg command aborts an installation when it detects that an existing file would be overwritten, Approved by: portmgr (implicit)
* biology/ncbi-entrez-direct: Update to 14.9.20210423_1Jason W. Bacon2021-04-265-41/+17
| | | | A few fixes to pass upstream test script
* biology/ncbi-entrez-direct: Access to the NCBI's interconnected databasesJason W. Bacon2021-04-2410-0/+267
Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window.