aboutsummaryrefslogtreecommitdiff
path: root/biology/phylip
Commit message (Collapse)AuthorAgeFilesLines
* Extend expiration of ports broken with -fno-commonNiclas Zeising2020-08-301-2/+3
| | | | | | | | | | | | | | | | | Extend the expiration of unmaintained leaf ports that are broken with -fno-common and previously had a short expiration date. The new date is set to 2021-04-01, meaning the ports will be in the 2021Q2 branch, giving people until 2021-06-30 (10 months from now) to fix issues. Improve the wording of the deprecation message, mentioning both llvm 11 and -fno-common. Bump portrevision to force reinstall. This way the warning message about deprecation will be displayed to users installing or reinstalling the software. MFH: 2020Q3 (maybe) Notes: svn path=/head/; revision=547044
* biology/: Fix build with clang11 and deprecate ports@ portsTobias C. Berner2020-08-291-0/+5
| | | | Notes: svn path=/head/; revision=546885
* Add USES=xorg USES=gl, ports categories bNiclas Zeising2019-11-041-1/+1
| | | | | | | | Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories starting with 'b'. Notes: svn path=/head/; revision=516742
* - Update to 3.697Wen Heping2018-01-012-3/+4
| | | | Notes: svn path=/head/; revision=457755
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.Mathieu Arnold2016-04-011-1/+1
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412344
* UnbreakAntoine Brodin2015-07-281-1/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=393084
* - Fix four cases of an obvious typo: LICENSE_FILES -> LICENSE_FILEAlexey Dokuchaev2015-07-251-2/+2
| | | | | | | | | - While here: move knobs to their expected location, remove useless check for ${PORT_OPTIONS:MDOCS} when installing documentation, standardize Makefile headers Notes: svn path=/head/; revision=392887
* - Update to version 3.696Pawel Pekala2014-11-023-30/+18
| | | | | | | | | | | - Add LICENSE, no EXAMPLES included in distfile now - Rework pkg-descr, remove author info - it's available on homepage PR: 194163 Submitted by: tkato432@yahoo.com Notes: svn path=/head/; revision=372070
* Cleanup plistBaptiste Daroussin2014-10-201-1/+0
| | | | Notes: svn path=/head/; revision=371237
* The FreeBSD x11@ and graphics team proudly presentsNiclas Zeising2014-04-161-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a zeising, kwm production, with help from dumbbell, bdrewery: NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE This update switches over to use the new xorg stack by default on FreeBSD 9 and 10 stable, on osversions where vt(9) is available. It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in /etc/make.conf . FreeBSD 8-STABLE and released versions of FreeBSD still use the old version. A package repository with binary packages for new xorg will be available soon. This patch also contains updates of libxcb and related ports, pixman, as well as some drivers and utilities. Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due to xserver version change. Apart from these updates, the way shared libraries are handled has been changed for all xorg ports, as well as libxml2 and freetype, which means ltverhack is gone and as a consequence shared libraries have been bumped. The plan is that this change will make library bumps less likely in the future. All affected ports have had their portrevisions bumped as a consequence of this. Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT. Update instructions, hardware support, and more notes can be found on https://wiki.freebsd.org/Graphics Thanks to: all testers, bdrewery and the FreeBSD x11@ team exp-run by: bdrewery [1] PR: ports/187602 [1] Approved by: portmgr (bdrewery), core (jhb) Notes: svn path=/head/; revision=351411
* - Add staging supportPawel Pekala2014-03-231-17/+13
| | | | | | | - Strip libraries Notes: svn path=/head/; revision=348893
* - Convert USE_GMAKE to USESMartin Wilke2014-03-131-1/+1
| | | | Notes: svn path=/head/; revision=348042
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Remove MAKE_JOBS_SAFE variableAlex Kozlov2013-08-141-1/+0
| | | | | | | Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=324744
* Fix some screw ups introduced in r319847.Raphael Kubo da Costa2013-06-242-4/+4
| | | | | | | | | | | | | I'm not sure if the submitter of ports/179224 didn't even test his patch or if the distfile was re-rolled in a bizarre way. Anyway, fix distfile and also cd into the correct directories to actually build the port. PR: ports/179790 Notes: svn path=/head/; revision=321697
* . pet portlint: add USE_LDCONFIG;Boris Samorodov2013-06-191-0/+2
| | | | | | | . bump PORTREVISION. Notes: svn path=/head/; revision=321283
* - Update to 3.6.9.5Martin Wilke2013-06-043-19/+33
| | | | | | | | PR: 179224 Submitted by: Ports Fury Notes: svn path=/head/; revision=319847
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* For ports maintained by ports@FreeBSD.org, remove names and/orDoug Barton2009-12-211-1/+0
| | | | | | | | | | | e-mail addresses from the pkg-descr file that could reasonably be mistaken for maintainer contact information in order to avoid confusion on the part of users looking for support. As a pleasant side effect this also avoids confusion and/or frustration for people who are no longer maintaining those ports. Notes: svn path=/head/; revision=246327
* -Update to 3.69Martin Wilke2009-09-162-14/+10
| | | | | | | | | PR: 138813 Submitted by: Ports Fury Feature safe: yes Notes: svn path=/head/; revision=241516
* - Update X.org ports to 7.4+ (few ports are more recent than the katamari).Florent Thoumie2009-01-231-0/+1
| | | | | | | | | | | - Bump PORTREVISION for all ports depending on libglut since the shlib version number went from 4 to 3. - Bump PORTREVISION for all ports depending on libXaw as libXaw.so.8 isn't installed anymore. - Couple of ports fixes (mostly missing xorg components added to USE_XORG). Notes: svn path=/head/; revision=226727
* - Fix buildPietro Cerutti2008-08-271-2/+2
| | | | | | | Reported by: QA Tindie Notes: svn path=/head/; revision=219325
* - Update to 3.68Pietro Cerutti2008-08-272-6/+5
| | | | Notes: svn path=/head/; revision=219315
* - Fix build dependsPietro Cerutti2008-06-091-0/+3
| | | | | | | | | - Bump port revision Reported by: pointyhat via pav Notes: svn path=/head/; revision=214547
* - Update to 3.67Pietro Cerutti2008-06-032-12/+7
| | | | | | | - Sanitize Makefile a little bit Notes: svn path=/head/; revision=214280
* - Remove unneeded dependency from gtk12/gtk20 [1]Martin Wilke2008-04-191-4/+4
| | | | | | | | | | | | | | | | | | - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG - Remove X11BASE support in favor of LOCALBASE or PREFIX - Use USE_LDCONFIG instead of INSTALLS_SHLIB - Remove unneeded USE_GCC 3.4+ Thanks to all Helpers: Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr, ehaupt, nox, itetcu, flz, pav PR: 116263 Tested on: pointyhat Approved by: portmgr (pav) Notes: svn path=/head/; revision=211584
* - Welcome X.org 7.2 \o/.Florent Thoumie2007-05-191-0/+1
| | | | | | | | - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}. Notes: svn path=/head/; revision=191544
* Update to 3.66Ion-Mihai Tetcu2007-01-272-4/+4
| | | | | | | | PR: ports/108434 Submitted by: Marcelo Araujo Notes: svn path=/head/; revision=183435
* Reset dbader@ece.unm.edu due to timeouts and no response to email.Mark Linimon2006-12-131-1/+1
| | | | | | | Hat: portmgr Notes: svn path=/head/; revision=179659
* - Respect X11BASERong-En Fan2006-12-021-1/+1
| | | | | | | Approved by: maintainer (implicit) Notes: svn path=/head/; revision=178624
* Put PORTEPOCH back.Sam Lawrance2006-02-091-0/+1
| | | | | | | Reported by: chkversion Notes: svn path=/head/; revision=155550
* Update to 3.65.Sam Lawrance2006-02-083-73/+17
| | | | | | | | | PR: ports/92182 Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com> Approved by: dbader@ece.unm.edu (maintainer, timeout 14 days) Notes: svn path=/head/; revision=155521
* SHA256ifyEdwin Groothuis2006-01-221-0/+1
| | | | | | | Approved by: krion@ Notes: svn path=/head/; revision=154141
* Bump PORTEPOCH. 3.6 < 3.62Tilman Keskinoz2005-04-221-0/+1
| | | | | | | Pointyhat to: arved Notes: svn path=/head/; revision=133930
* Upgrade to 3.62Tilman Keskinoz2005-04-212-3/+3
| | | | | | | | PR: 79234 Submitted by: David A. Bader <dbader@ece.unm.edu> Notes: svn path=/head/; revision=133849
* - Add some sites I found with Google, as old master site don't have thisPav Lucistnik2004-12-091-1/+4
| | | | | | | | | version anymore Reported by: pointyhat via krion Notes: svn path=/head/; revision=123561
* - Update to 3.62Pav Lucistnik2004-10-113-6/+16
| | | | | | | | | | | - Install font files PR: ports/72212 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: David A. Bader <dbader@ece.unm.edu> (maintainer) Notes: svn path=/head/; revision=118625
* SIZEify (maintainer timeout)Trevor Johnson2004-03-311-0/+1
| | | | Notes: svn path=/head/; revision=105747
* - Update to 3.6.bPav Lucistnik2004-01-312-4/+3
| | | | | | | | PR: ports/62142 Submitted by: David A. Bader <dbader@ece.unm.edu> (maintainer) Notes: svn path=/head/; revision=99626
* Cosmetic fix: use %%DOCSDIR%% macro.Sergey A. Osokin2003-10-221-43/+43
| | | | | | | | | | No functionally changes. Submitted by: Oleg Karachevtsev <ok@etrust.ru> A part of PR: 57992 Notes: svn path=/head/; revision=91882
* De-pkg-comment.Akinori MUSHA2003-02-212-1/+1
| | | | Notes: svn path=/head/; revision=76030
* Update to version 3.6.a3.Christian Weisgerber2002-08-133-22/+7
| | | | | | | | | | | | | | PR: 41412 Submitted by: David A. Bader <dbader@eece.unm.edu> Additional clean-up: * Respect CC, CFLAGS, X11BASE. * Use versioned DIST_SUBDIR. Approved by: maintainer Notes: svn path=/head/; revision=64470
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie2001-08-225-43/+30
| | | | | | | | | | | | renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER Notes: svn path=/head/; revision=46632
* Add support for %%PORTDOCS%%.Johann Visagie2001-07-031-42/+42
| | | | | | | | PR: 28670 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44703
* This port require X libraries to build/run.Steve Price2001-04-111-0/+1
| | | | Notes: svn path=/head/; revision=41260
* updated port biology/phylip from vers 3.5 to 3.6Michael Haro2001-04-025-94/+110
| | | | | | | | PR: 26146 Submitted by: "David A. Bader" <dbader@eece.unm.edu> Notes: svn path=/head/; revision=40709
* Adding phylip version 3.5.Steve Price2000-07-105-0/+161
This is a FREE package of programs for inferring phylogenies and carrying out certain related tasks. At present it contains 30 programs, which carry out different algorithms on different kinds of data. PR: 19705 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> Notes: svn path=/head/; revision=30408