ports - FreeBSD ports tree

	Commit message (Collapse)	Author	Age	Files	Lines
*	biology/star: Update to 2.7.9a	Jason W. Bacon	2021-11-26	8	-35/+162
\| \| \| \| \| \|	Also unbundle htslib Changes: https://github.com/alexdobin/STAR/releases/tag/2.7.9a
*	One more small cleanup, forgotten yesterday.	Mathieu Arnold	2021-04-07	1	-1/+0
\| \| \| \|	Reported by: lwhsu
*	Remove # $FreeBSD$ from Makefiles.	Mathieu Arnold	2021-04-06	1	-1/+0
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*	biology/star: Drop dependency on gcc	Jason W. Bacon	2021-01-11	2	-15/+15
\| \| \| \| \| \| \| \| \|	Replace compiler:openmp with compiler:c++11-lang and localbase PR: port/247753, ports/252379 Notes: svn path=/head/; revision=561235
*	biology/star: Upgrade to 2.7.3a	Jason W. Bacon	2020-04-09	2	-4/+4
\| \| \| \| \| \| \|	Several compatibility and feature enhancements Notes: svn path=/head/; revision=531206
*	biology/star: Upgrade to 2.7.2d	Jason W. Bacon	2019-10-06	2	-6/+5
\| \| \| \| \| \| \| \| \| \| \|	Fix chimeric output bug. Numerous other minor fixes and enhancements since 2.7.0. Reported by: portscout Notes: svn path=/head/; revision=513915
*	Bump PORTREVISION for ports depending on the canonical version of GCC	Gerald Pfeifer	2019-07-26	1	-0/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
*	biology/star: Force newer GCC on platforms with GCC 4.2 base	Jason W. Bacon	2019-05-02	1	-1/+8
\| \| \| \| \| \| \| \|	PR: 237700 Submitted by: pkubaj Notes: svn path=/head/; revision=500629
*	biology/star: Modify PKGBASE to avoid conflict with archivers/star	Jason W. Bacon	2019-04-23	1	-0/+1
\| \| \| \|	Notes: svn path=/head/; revision=499763
*	biology/star: Spliced Transcripts Alignment to a Reference	Jason W. Bacon	2019-04-21	5	-0/+69
	STAR is an extremely fast RNA-seq aligner, an alternative to tophat2, hisat2, bowtie, subread, etc. Notes: svn path=/head/; revision=499592