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* biology/tabixpp: fix build on GCC architecturesPiotr Kubaj2020-11-231-1/+1
| | | | | | | | | | | | | | | | c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -c tabix.cpp -Ihtslib In file included from /usr/local/include/htslib/hts.h:37, from /usr/local/include/htslib/tbx.h:30, from tabix.hpp:5, from tabix.cpp:1: /usr/local/include/htslib/kstring.h: In function 'int ks_resize(kstring_t*, size_t)': /usr/local/include/htslib/kstring.h:149: error: 'SIZE_MAX' was not declared in this scope tabix.cpp: In constructor 'Tabix::Tabix(std::string&)': tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263) tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at /usr/local/include/htslib/bgzf.h:263) Notes: svn path=/head/; revision=556113
* biology/htslib: Upgrade to 1.10.2Jason W. Bacon2020-08-031-0/+1
| | | | | | | | | | | | Numerous bug fixes and enhancements since 1.9: https://github.com/samtools/htslib/tags Bump PORTREVISION on dependents that don't require additional patching PR: 248089 Notes: svn path=/head/; revision=544090
* biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon2018-04-144-0/+130
Reviewed by: mat Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14977 Notes: svn path=/head/; revision=467343