aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentAde Lovett2005-11-152-2/+2
| | | | | | | | | | | | | | | | | | | | in bsd.autotools.mk essentially makes this a no-op given that all the old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in exactly the same way as USE_AUTOTOOLS itself. Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME team -- all GNOME 2.12.x ports use it. Preliminary documentation can be found at: http://people.FreeBSD.org/~ade/autotools.txt which is in the process of being SGMLized before introduction into the Porters Handbook. Light blue touch-paper. Run. Notes: svn path=/head/; revision=148323
* - Mark it as DEPRECATED - master site disapearedRenato Botelho2005-11-111-0/+3
| | | | | | | | | | | - Set EXPIRATION_DATE PR: ports/88003 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (17 days) Notes: svn path=/head/; revision=147932
* - Mark it as DEPRECATED - master site disapearedRenato Botelho2005-11-111-0/+3
| | | | | | | | | | | - Set EXPIRATION_DATE PR: ports/88002 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (17 days) Notes: svn path=/head/; revision=147931
* - Mark it as DEPRECATED (mastersite disapeared)Renato Botelho2005-11-111-0/+3
| | | | | | | | | | | - Set EXPIRATION_DATE PR: ports/88000 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (16 days) Notes: svn path=/head/; revision=147930
* With portmgr hat on, reset maintainership of knu's ports since he hasMark Linimon2005-11-111-1/+1
| | | | | | | been inactive more than 6 months. We hope to see him back sometime. Notes: svn path=/head/; revision=147872
* Update to 1.41Marcus Alves Grando2005-11-115-44/+87
| | | | | | | | | | | Take MAINTAINER Add SHA256 PR: 88792 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> Notes: svn path=/head/; revision=147871
* Update to 3.14bMarcus Alves Grando2005-11-102-9/+11
| | | | | | | | | | | | | Update MASTER_SITES Add SHA256 Remove extra TABS PR: 88007 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout, 14 days Notes: svn path=/head/; revision=147771
* Remove expired portsKris Kennaway2005-11-057-110/+0
| | | | Notes: svn path=/head/; revision=147349
* Bump PORTREVISION to chase the glib20 shared library update.Joe Marcus Clarke2005-11-054-3/+4
| | | | Notes: svn path=/head/; revision=147269
* Mark DEPRECATED since upstream is unmaintained and mastersite is gone.Sam Lawrance2005-10-291-0/+3
| | | | | | | | | PR: ports/88004 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: Tony Maher <anthony.maher@uts.edu.au> (maintainer) Notes: svn path=/head/; revision=146663
* BROKEN: UnfetchableKris Kennaway2005-10-281-0/+2
| | | | Notes: svn path=/head/; revision=146542
* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forEmanuel Haupt2005-10-155-0/+61
| | | | | | | | | | | NCBI Entrez Gene. PR: 87423 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> Approved by: novel (mentor) (implicit) Notes: svn path=/head/; revision=145476
* - Update to 20050605Sergey Matveychuk2005-10-115-20/+36
| | | | | | | | PR: ports/87266 Submitted by: maintainer Notes: svn path=/head/; revision=145033
* - Update to 3.13. It fixes fetching.Sergey Matveychuk2005-10-114-167/+61
| | | | | | | | PR: ports/87264 Submitted by: maintainer Notes: svn path=/head/; revision=145000
* Update to 0.9.8Maho Nakata2005-10-103-318/+363
| | | | Notes: svn path=/head/; revision=144778
* Checking MACHINE_ARCH is deprecated.Trevor Johnson2005-09-231-1/+1
| | | | Notes: svn path=/head/; revision=143440
* Update to version 7Herve Quiroz2005-09-203-47/+160
| | | | | | | | | PR: 86196 Submitted by: Tony Maher <anthony.maher@uts.edu.au> Approved by: maintainer Notes: svn path=/head/; revision=143213
* Don't strip static libraries on installation ;)Volker Stolz2005-09-141-1/+2
| | | | | | | (Unbreaks e.g. biology/nclever) Notes: svn path=/head/; revision=142695
* Add p5-Bio-Das 1.02, client-side library for Distributed GenomeRenato Botelho2005-09-015-0/+158
| | | | | | | | | | Annotation System. PR: ports/76379 Submitted by: Razi Khaja <razi@genet.sickkids.on.ca> Notes: svn path=/head/; revision=141702
* This port is scheduled for deletion on 2005-09-22 if it is still brokenKris Kennaway2005-07-231-0/+2
| | | | | | | at that time and no PRs have been submitted to fix it. Notes: svn path=/head/; revision=139936
* - Update to 1.0.0Patrick Li2005-06-133-368/+365
| | | | | | | | | | | | - Make DATADIR/EXAMPLESDIR/DOCSDIR safe - Don't hardcode ${CPIO} PR: ports/82154 Submitted by: George Hartzell <hartzell@alerce.com> Approved by: maintainer Notes: svn path=/head/; revision=137383
* change the libtool version to use from 1.3 to 1.5Oliver Lehmann2005-05-311-1/+1
| | | | Notes: svn path=/head/; revision=136537
* - Update to 2.10.0Pav Lucistnik2005-05-295-42/+78
| | | | | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=136390
* - Update to 2.10.0Pav Lucistnik2005-05-293-995/+1221
| | | | | | | | | PR: ports/81579 Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=136389
* Finish repo copy of wxgtk 2.4.2 ports to wxgtk24*Max Khon2005-05-122-3/+3
| | | | Notes: svn path=/head/; revision=135139
* - Fix the packing list [1]Jean-Yves Lefort2005-04-293-5/+6
| | | | | | | | | | | | - Add a run dependency on ucpp - Correct the NABHOME used in pre-install PR: ports/80457 Submitted by: maintainer Reported by: pointyhat [1] Notes: svn path=/head/; revision=134369
* - Update to 5.0Jean-Yves Lefort2005-04-2815-782/+851
| | | | | | | | | | - Cleanups PR: ports/80372 Submitted by: maintainer Notes: svn path=/head/; revision=134328
* Bump PORTEPOCH. 3.6 < 3.62Tilman Keskinoz2005-04-221-0/+1
| | | | | | | Pointyhat to: arved Notes: svn path=/head/; revision=133930
* Upgrade to 3.62Tilman Keskinoz2005-04-212-3/+3
| | | | | | | | PR: 79234 Submitted by: David A. Bader <dbader@ece.unm.edu> Notes: svn path=/head/; revision=133849
* - update grappa to 2.0Yen-Ming Lee2005-04-154-29/+13
| | | | | | | | | | | | - utilize PLIST_FILES - unbreak it on 4.x - update maintainer's email PR: 79241 Submitted by: David A. Bader <dbader@ece.unm.edu> Notes: svn path=/head/; revision=133447
* At Kris's request, back out the MACHINE_ARCH spelling correction untilDavid E. O'Brien2005-04-129-9/+9
| | | | | | | after 5.4-RELEASE. Notes: svn path=/head/; revision=133116
* - Change maintainer's email address.Florent Thoumie2005-04-111-1/+1
| | | | Notes: svn path=/head/; revision=133080
* - ARCH is defined in bsd.port.pre.mkFlorent Thoumie2005-04-111-1/+3
| | | | Notes: svn path=/head/; revision=133022
* Assist getting more ports working on AMD64 by obeying theDavid E. O'Brien2005-04-119-9/+9
| | | | | | | Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'. Notes: svn path=/head/; revision=132992
* Upgrade to 0.5 and take maintainership.Thierry Thomas2005-04-084-9/+25
| | | | | | | | | | | Remark: still broken on FreeBSD-5.x. PR: ports/79304 Submitted by: Fernan Aguero (new maintainer) Approved by: Tony Maher (previous maintainer) Notes: svn path=/head/; revision=132791
* Try to unbreak on amd64 and ia64Kris Kennaway2005-03-261-1/+1
| | | | | | | Approved by: portmgr (self) Notes: svn path=/head/; revision=132041
* BROKEN: UnfetchableKris Kennaway2005-03-261-0/+2
| | | | | | | Approved by: portmgr (self) Notes: svn path=/head/; revision=132026
* Fix build on amd64Maho Nakata2005-03-241-2/+11
| | | | | | | | Submitted by: kris via pointy hat Approved by: portmgr (marcus) Notes: svn path=/head/; revision=131924
* - Add 'java' categoryHerve Quiroz2005-03-201-2/+1
| | | | | | | | | | - Remove incorrect (and unneeded) JAVA_RUN statement PR: 78761 Submitted by: me Notes: svn path=/head/; revision=131726
* - Fix man page damage I did last nightPav Lucistnik2005-03-201-7/+9
| | | | | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=131713
* - Update to 2.2.10 from 20041020Pav Lucistnik2005-03-196-196/+161
| | | | | | | | | | | | - Transfer maintainership PR: ports/67735 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: old maintainer indirectly in http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html Notes: svn path=/head/; revision=131662
* From the PR:Alexey Dokuchaev2005-03-182-4/+16
| | | | | | | | | | | | | | | | | | | I've added PORTREVISION to the port and set it to the release date as in the lang/gcc* ports. Since the distinfo file is not used, this would help users know when they have to update their ports. Although newer release might be made, the idea is to bump PORTREVISION for important feature releases on when significant bugs are fixed. Other minor (cosmetic) changes also applied. PR: ports/78963 Sumbitted by: maintainer Notes: svn path=/head/; revision=131561
* Bump PORTREVISION to chase the glib20 shared lib version change.Joe Marcus Clarke2005-03-124-3/+4
| | | | Notes: svn path=/head/; revision=130974
* - biology/act is redundant after biology/artemis updateSergey Matveychuk2005-03-125-1648/+0
| | | | | | | | | PR: ports/76217 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout (2 monthes) Notes: svn path=/head/; revision=130960
* - Update to version 6Sergey Matveychuk2005-03-124-1505/+1529
| | | | | | | | | | | - Pass maintainership to submitter PR: ports/76219 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout (2 monthes) Notes: svn path=/head/; revision=130959
* Add finchtv 1.3.0, a chromatogram trace viewer.Thierry Thomas2005-03-116-0/+209
| | | | | | | | PR: 70271 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> Notes: svn path=/head/; revision=130938
* Fix build on 4.xKirill Ponomarev2005-02-191-0/+4
| | | | | | | | PR: ports/77697 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129257
* As previously announced, remove ports that have reached their expiry date,Kris Kennaway2005-02-187-455/+0
| | | | | | | and the handful of ports that depended on them. Notes: svn path=/head/; revision=129234
* Update to version 2.0.3Kirill Ponomarev2005-02-183-10/+13
| | | | | | | | PR: ports/77676 Submitted by: Sam Lawrance <boris at brooknet.com.au> Notes: svn path=/head/; revision=129170
* Readd mistakenly removed patch to honour CC/CFLAGS.Kirill Ponomarev2005-02-181-0/+43
| | | | Notes: svn path=/head/; revision=129169