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* - Chase database/sqlite3 slib bumpMartin Wilke2014-06-271-0/+1
| | | | | | | Approved by: portmgr (myself) Notes: svn path=/head/; revision=359586
* Fix compilation on 10+ (clang)Martin Wilke2014-06-272-2/+10
| | | | | | | | | Fix format of WWW entry in pkg-descr PR: 190798 Notes: svn path=/head/; revision=359532
* - Mark BROKENWen Heping2014-06-261-0/+2
| | | | | | | Approved by: portmgr@(implicit) Notes: svn path=/head/; revision=359364
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkAntoine Brodin2014-06-251-1/+2
| | | | Notes: svn path=/head/; revision=359207
* Use MAKE_CMD instead of GMAKEBaptiste Daroussin2014-06-241-2/+2
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=359138
* Mark as broken: no distinfo providedBaptiste Daroussin2014-06-221-2/+1
| | | | Notes: svn path=/head/; revision=358838
* Mark as broken: no distinfo providedBaptiste Daroussin2014-06-221-3/+1
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=358837
* Fix shebang line in Perl and Python scripts.Raphael Kubo da Costa2014-06-201-13/+6
| | | | | | | | PR: 191146 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer) Notes: svn path=/head/; revision=358567
* Mark BROKEN: Fails to configureAntoine Brodin2014-06-191-0/+2
| | | | | | | | | | | | ===> Configuring for p5-bioperl-run-1.6.1_4 Invalid prerequisite condition '0/processing XML data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at /usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702. *** [do-configure] Error code 25 Reported by: pkg-fallout With hat: portmgr Notes: svn path=/head/; revision=358466
* biology/blast: Deprecate for removal after 4 September 2014John Marino2014-06-191-0/+3
| | | | | | | | | | | This unstaged port will be removed for legal reasons. PR: 190626 Submitted by: Muhammad Rahman Approved by: portmgr (implicit) Notes: svn path=/head/; revision=358383
* Update to 1.2.10.Raphael Kubo da Costa2014-06-173-35/+23
| | | | | | | | PR: 191129 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer) Notes: svn path=/head/; revision=358183
* Update to 3.8.31.Raphael Kubo da Costa2014-06-175-89/+37
| | | | | | | | PR: 191130 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer) Notes: svn path=/head/; revision=358182
* Reset the 99 ports still listed under sylvio@John Marino2014-06-111-1/+1
| | | | | | | | | | | | | | Sylvio's last commit was 17 months ago, a full 5 months after all of his ports could have been reset per policy. Given the push to complete staging (48 ports are still unstaged, something like 70+ have already been staged by other committers) and given that PRs are automatically assigned but never addressed, it's better just to reset all the ports and PRs so that it's clear to others that these ports are free to maintain. Approved by: portmgr (implicit) Notes: svn path=/head/; revision=357526
* Remove all the bootstrap files (.bs) from the plists.Mathieu Arnold2014-06-102-3/+0
| | | | | | | | | | | | | Starting with perl 5.20, they're not installed any more if empty, and on FreeBSD, they're (always ?) empty. PR: 190681 Submitted by: mat Exp-Run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=357300
* Remove indefinite articles and trailing periods from COMMENT, plusJimmy Olgeni2014-06-096-6/+6
| | | | | | | | | | minor COMMENT typos and surrounding whitespace fixes. Categories A-C. CR: D196 Approved by: portmgr (bapt) Notes: svn path=/head/; revision=357139
* Remove all space characters from Makefile assignments.Jimmy Olgeni2014-06-081-1/+1
| | | | | | | | | | No functional changes included. CR: D193 (except math/sedumi) Approved by: portmgr (bapt) Notes: svn path=/head/; revision=357070
* Stagify, remove BROKEN.Vanilla I. Shu2014-06-072-112/+107
| | | | Notes: svn path=/head/; revision=356870
* - Update to 6.6.0Martin Wilke2014-06-055-834/+1183
| | | | | | | | | | - Stage support PR: 190508 Submitted by: Muhammad Moinur Rahman Notes: svn path=/head/; revision=356575
* UnbreakAntoine Brodin2014-06-041-1/+1
| | | | Notes: svn path=/head/; revision=356541
* - Update to 4.5.2Martin Wilke2014-06-042-5/+5
| | | | | | | | | - Pass maintainership to submitter PR: 190564 Notes: svn path=/head/; revision=356437
* Update to 0.5.1 snapshot 20100824Baptiste Daroussin2014-06-034-8/+49
| | | | | | | | | | For the story when moved to google code the project released a version 0.5 which was newer than the 0.5.1 from earlier hosting To be consistent named it 0.5.1s20100824 (following what debian did) Switch treeviewx to use unicode version of wx Add a patch from Ubuntu to fix loading trees. Notes: svn path=/head/; revision=356372
* - add stage supportOlli Hauer2014-06-011-5/+1
| | | | | | | - adjust BSDn license Notes: svn path=/head/; revision=356100
* - add stage supportOlli Hauer2014-06-011-12/+6
| | | | Notes: svn path=/head/; revision=356099
* - add stage supportOlli Hauer2014-06-011-22/+16
| | | | | | | | - add OPTION for X11 - bump PORTREVISION Notes: svn path=/head/; revision=356098
* - add stage supportOlli Hauer2014-06-011-6/+3
| | | | Notes: svn path=/head/; revision=356095
* - add stage supportOlli Hauer2014-06-011-16/+4
| | | | Notes: svn path=/head/; revision=356093
* - add stage supportOlli Hauer2014-06-011-21/+8
| | | | Notes: svn path=/head/; revision=356092
* - I forgot to svn add a new patchDanilo Egea Gondolfo2014-05-311-0/+10
| | | | Notes: svn path=/head/; revision=355999
* - Update from 1.13.5 to 1.13.7Danilo Egea Gondolfo2014-05-313-9/+9
| | | | | | | | - Add libtool to USES - Take maintainership Notes: svn path=/head/; revision=355998
* Add DOCS and EXAMPLE options to biology/mafftJonathan Chu2014-05-311-0/+2
| | | | | | | | | PR: ports/190161 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer) Approved by: swills (maintainer) Notes: svn path=/head/; revision=355931
* - Update to 1.6.923Wen Heping2014-05-305-1532/+1440
| | | | | | | | | | - Add STAGE support PR: 190342 Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> Notes: svn path=/head/; revision=355863
* biology/embassy: specify post-extraction with ${TAR}John Marino2014-05-291-1/+1
| | | | | | | | | | | | | | | It's possible that EXTRACT_CMD won't be predefined in the near future in order to support distfiles in multiple formats. We know the post- extraction tool needs to be tar, so let's specify it directly. This port needs staging. It doesn't like like a quick job so I'm leaving that to the listed maintainer. Approved by: infrastructure improvements blanket Approved by: portmgr (implicit) (to skip stage check) Notes: svn path=/head/; revision=355684
* Convert to USES=dos2unixBaptiste Daroussin2014-05-261-2/+2
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=355278
* Multiple ports: reset maintainersEitan Adler2014-05-262-2/+2
| | | | | | | | | | | | | | | | | Maintainers for these ports have been notified on 5 separate occasions over the course of several months about pending actions required. We really appreciate the time and effort you put in to maintain these ports. If you are still interested in helping to maintain these ports just reply to me or file a PR and I will happily assign the port to you again. Approved by: portmgr (implicit) Notes: svn path=/head/; revision=355274
* - Update to 4.5.1Martin Wilke2014-05-213-8/+13
| | | | | | | | PR: 187975 Submitted by: Ports Fury Notes: svn path=/head/; revision=354710
* - Update to 7.149Dmitry Marakasov2014-05-203-32/+35
| | | | | | | | | | | - Clarify LICENSE - Stagify PR: 189746 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer) Notes: svn path=/head/; revision=354673
* Quote ${CC} and similar variables in MAKE_ARGS.Tijl Coosemans2014-05-201-1/+1
| | | | | | | Reported by: Dominic Fandrey <kamikaze@bsdforen.de> Notes: svn path=/head/; revision=354670
* - update to 1.31Philippe Audeoud2014-05-162-3/+3
| | | | Notes: svn path=/head/; revision=354223
* - Update to 5.10.0Wen Heping2014-05-133-6/+39
| | | | Notes: svn path=/head/; revision=353921
* - Update to 5.9.0 [1]Wen Heping2014-05-133-40/+263
| | | | | | | | | | | | - Stage support [1] - Add LICENSE [1] - Reset maintainer to port@ PR: 188554 [1] Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1] Notes: svn path=/head/; revision=353913
* Replace maintainer's email address with one that seems to workAntoine Brodin2014-05-104-4/+4
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=353593
* Catch a couple of missing convertsion to :tu/:tlBaptiste Daroussin2014-05-051-1/+1
| | | | | | | | Submitted by: ak With hat: portmgr Notes: svn path=/head/; revision=352993
* Support stageBaptiste Daroussin2014-05-051-20/+9
| | | | Notes: svn path=/head/; revision=352989
* Convert all :U to :tu and :L to :tlBaptiste Daroussin2014-05-051-3/+3
| | | | | | | | | | | | | | | | | Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a replacement for :U and :L (which has been marked as deprecated) bmake which is the default on FreeBSD 10+ only support by default :tu/:tl a hack has been added at the time to support :U and :L to ease migration. This hack is now not necessary anymore Note that this makes the ports tree incompatible with make(1) from FreeBSD 8.3 or earlier With hat: portmgr Notes: svn path=/head/; revision=352986
* biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgradingKurt Jaeger2014-05-022-4/+5
| | | | | | | | Submitted by: pi (myself) Approved by: jadawin (mentor) Notes: svn path=/head/; revision=352838
* - Stage support [1]Wen Heping2014-05-023-1064/+5
| | | | | | | | | | | | - Pet portlint [1] - Add LICENSE - Convert to PYDISTUTILS_AUTOPLIST PR: 188819 [1] Submitted by: Bartek Rutkowski <ports@robakdesign.com> [1] Notes: svn path=/head/; revision=352814
* biology/seqtools: 4.24 -> 4.25Kurt Jaeger2014-05-012-5/+4
| | | | | | | | | PR: ports/186299 Submitted by: pi (myself) Approved by: jadawin (mentor) Notes: svn path=/head/; revision=352761
* - StageSteve Wills2014-04-272-1138/+2
| | | | | | | | | | | | | - Drop easy_install - Use auto pkg-plist - Delete pkg-plist PR: ports/188818 Submitted by: Bartek Rutkowski <ports@robakdesign.com> Approved by: portmgr@ (blanket) Notes: svn path=/head/; revision=352389
* - Update to version 1.13.5Martin Wilke2014-04-264-43/+52
| | | | | | | | PR: 188863 Submitted by: ports fury Notes: svn path=/head/; revision=352216
* - Un-break fetch stage: the name scheme of the source tarballs has changedThomas Zander2014-04-225-12/+34
| | | | | | | | | | | | | | | | - Add LICENSE* - Remove conflict with hunspell: - Rename the 'analyze' binary to 'analyze_t' - put a note in pkg-message.in - Pet portlint PR: ports/187569 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Approved by: thierry (mentor) MFH: 2014Q2 Notes: svn path=/head/; revision=351875
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