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* New Port: biology/actEdwin Groothuis2003-01-166-0/+1031
| | | | | | | | PR: ports/35753 Submitted by: Camson Huynh <chuynh@biolateral.com.au> Notes: svn path=/head/; revision=73258
* Add missing fileKris Kennaway2003-01-141-0/+1
| | | | Notes: svn path=/head/; revision=73104
* Add some missing filesKris Kennaway2003-01-141-0/+4
| | | | Notes: svn path=/head/; revision=73078
* Update to 3.8Tilman Keskinoz2003-01-083-22/+6
| | | | | | | Approved by: rmiya@cc.hirosaki-u.ac.jp (maintainer) Notes: svn path=/head/; revision=72740
* update biology/babel to properly output mm3 files.Edwin Groothuis2003-01-032-1/+93
| | | | | | | | PR: ports/42425 Submitted by: Glenn Johnson <glennpj@charter.net> Notes: svn path=/head/; revision=72369
* upgrade to 3.7Ying-Chieh Liao2003-01-025-193/+255
| | | | | | | | PR: 44957 Submitted by: maintainer Notes: svn path=/head/; revision=72130
* add missing includeYing-Chieh Liao2002-12-291-0/+10
| | | | | | | | PR: 46584 Submitted by: Ports Fury Notes: svn path=/head/; revision=71967
* fix build on -currentYing-Chieh Liao2002-12-225-0/+53
| | | | | | | | PR: 46459 Submitted by: Ports Fury Notes: svn path=/head/; revision=71779
* Fix typo: distribfold.org -> distributedfolding.orgMario Sergio Fujikawa Ferreira2002-12-192-2/+2
| | | | | | | Submitted by: Matt Mills <alpha@vanity.com> Notes: svn path=/head/; revision=71729
* o Update to 20021105 snapshotMario Sergio Fujikawa Ferreira2002-12-192-4/+9
| | | | | | | | | | | | | o Depend on compat4x on OSVERSION >= 500000 since these are 4.5-RELEASE binaries o House a copy under MASTER_SITE_LOCAL: the local copy will be versioned, developer has yet to be convinced of the advantages of distributing versioned files Approved by: portmgr (knu) Notes: svn path=/head/; revision=71722
* Mark BROKEN due to "Unknown problem"Mario Sergio Fujikawa Ferreira2002-11-251-0/+2
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=71069
* unbroke by upgrade to 20021018Ying-Chieh Liao2002-11-208-30/+72
| | | | | | | | | | drop maintainership PR: 45466 Submitted by: old maintainer Notes: svn path=/head/; revision=70600
* add treepuzzle 5.1Ying-Chieh Liao2002-11-206-0/+41
| | | | | | | | | | Maximum likelihood phylogeny reconstruction using quartets PR: 45241 Submitted by: Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de> Notes: svn path=/head/; revision=70552
* 1. add a missing dependency on png and unbreak.Maho Nakata2002-11-191-2/+3
| | | | | | | 2. change e-mail address of maho. Notes: svn path=/head/; revision=70527
* o Rollback PORTCOMMENT modifications while this feature's implementationMario Sergio Fujikawa Ferreira2002-11-106-6/+3
| | | | | | | | | | | is better studied o Turn PORTCOMMENT variable in Makefile back into pkg-comment files Approved by: kris (portmgr hat), portmgr, re (silence) Notes: svn path=/head/; revision=69808
* Update WWWTilman Keskinoz2002-11-071-1/+1
| | | | Notes: svn path=/head/; revision=69697
* Updated to fix problems as stated in PR ports/42915Edwin Groothuis2002-11-073-2/+42
| | | | | | | | PR: ports/42915 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=69663
* Fix PORTCOMMENTs that were killing INDEX builds.Adam Weinberger2002-11-072-2/+1
| | | | | | | | 105 pointy hats to: me Approved by: pat Notes: svn path=/head/; revision=69625
* Use PORTCOMMENT in the Makefile, and whack the pkg-comment.Adam Weinberger2002-11-068-4/+8
| | | | | | | Approved by: pat Notes: svn path=/head/; revision=69612
* Modify replace RE to match syntax of sed now ("\)" -> ")"Edwin Groothuis2002-11-051-8/+8
| | | | | | | Noticed by: bento Notes: svn path=/head/; revision=69489
* PERL -> REINPLACEEdwin Groothuis2002-11-044-10/+15
| | | | | | | And some ports have USE_PERL5=yes now. Notes: svn path=/head/; revision=69436
* PERL -> REINPLACEEdwin Groothuis2002-11-041-1/+2
| | | | | | | Noticed on: bento Notes: svn path=/head/; revision=69424
* PERL -> REINPLACEEdwin Groothuis2002-11-042-2/+4
| | | | | | | Noticed on: bento Notes: svn path=/head/; revision=69421
* Port needs perl to build.Edwin Groothuis2002-11-041-0/+2
| | | | | | | Seen on: bento Notes: svn path=/head/; revision=69418
* Make biology/avida building on -current againEdwin Groothuis2002-11-032-3/+2
| | | | | | | | | PR: ports/44819 Submitted by: Oliver Lehmann <lehmann@ans-netz.de> Approved by: Jeremy Karlson <karlj000@unbc.ca> Notes: svn path=/head/; revision=69392
* Add another entry for MASTER_SITES and unbreak with latest version of bisonPatrick Li2002-10-293-1/+25
| | | | | | | | PR: ports/44711 Submitted by: maintainer Notes: svn path=/head/; revision=69130
* Update CATEGORIES as per ports/44331.Tom Hukins2002-10-211-2/+2
| | | | | | | | | | While I'm here, remove unnecessary whitespace spotted by portlint. PR: ports/44331 Submitted by: Martin Klaffenboeck <martin.klaffenboeck@gmx.at> Notes: svn path=/head/; revision=68496
* o Update to snapshot 20021015Mario Sergio Fujikawa Ferreira2002-10-192-4/+17
| | | | | | | o Fix an issue with the startup scripts Notes: svn path=/head/; revision=68357
* Fix dependency on wxgtkKris Kennaway2002-10-191-1/+1
| | | | Notes: svn path=/head/; revision=68321
* CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' inAkinori MUSHA2002-10-101-1/+1
| | | | | | | | them when using a non-default compiler/linker, so do not use `/' as delimiter for s///. (I picked `|' instead) Notes: svn path=/head/; revision=67737
* Connect distribfold to build after moving it from misc categoryMario Sergio Fujikawa Ferreira2002-10-071-0/+1
| | | | | | | | | | Prompted by: kris, Adam Weinberger <adam@vectors.cx>, Fernan Aguero <fernan@iib.unsam.edu.ar>, others Notes: svn path=/head/; revision=67526
* o New port distribfold version 0.1: distribfold.org distributed proteinMario Sergio Fujikawa Ferreira2002-10-0711-0/+374
| | | | | | | | | folding project o One can start multiple instances of this port. Just install it using WITH_NCPU Notes: svn path=/head/; revision=67525
* Use RUBY_MOD*.Akinori MUSHA2002-10-062-31/+31
| | | | Notes: svn path=/head/; revision=67504
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)Johann Visagie2002-09-272-9/+7
| | | | | | | | Submitted by: kris, bento Approved by: Implicitly by first rule of ports freeze, I hope! Notes: svn path=/head/; revision=67164
* add forgotten "USE_REINPLACE=yes"Ying-Chieh Liao2002-09-211-0/+1
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=67009
* upgrade to 20020426Ying-Chieh Liao2002-09-216-22/+16
| | | | | | | | PR: 39357 Submitted by: maintainer Notes: svn path=/head/; revision=66997
* BROKEN: Does not fetchKris Kennaway2002-09-201-0/+2
| | | | Notes: svn path=/head/; revision=66901
* BROKEN: Does not buildKris Kennaway2002-09-191-0/+2
| | | | Notes: svn path=/head/; revision=66666
* add primer3 0.9Ying-Chieh Liao2002-09-176-0/+437
| | | | | | | | | | Primer3 helps to choose primers for PCR reactions PR: 35298 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=66513
* Flip is used to find/translate orfs.Dirk Meyer2002-09-106-0/+33
| | | | | | | | | WWW: ftp://megasun.bch.umontreal.ca/pub/flip/ PR: 35332 Submitted by: tonym@biolateral.com.au Notes: svn path=/head/; revision=66055
* "Wise2 is package that is focused on comparing DNA sequences atDirk Meyer2002-09-107-0/+185
| | | | | | | | the level of its conceptual translation, regardless of sequencing error and introns." Notes: svn path=/head/; revision=66053
* Chase new name of wxgtk shared library.Maxim Sobolev2002-09-091-1/+1
| | | | Notes: svn path=/head/; revision=65920
* Remove USE_NEWGCC, which is no longer supported or required.Kris Kennaway2002-08-311-1/+0
| | | | | | | | Submitted by: Tilman Linneweh <tilman@arved.de> PR: ports/40571 Notes: svn path=/head/; revision=65346
* Deploy USE_GNOMENG infrastructureMario Sergio Fujikawa Ferreira2002-08-302-2/+4
| | | | | | | | PR: 42187 Submitted by: Edwin Groothuis <edwin@mavetju.org> Notes: svn path=/head/; revision=65296
* o Fix examples directory path which is changed in last revision.Hye-Shik Chang2002-08-261-1/+5
| | | | | | | Submitted by: Glenn Johnson <glennpj@charter.net> Notes: svn path=/head/; revision=65018
* o Fix RUN_DEPENDS path (PMW -> Pmw)Hye-Shik Chang2002-08-252-4/+33
| | | | | | | | | | | | o Fix DISTNAME which was broken by previous commit. o Install example files PR: 41977 Submitted by: Glenn Johnson <glennpj@charter.net> Approved by: maintainer Notes: svn path=/head/; revision=64977
* Prefer <limits.h> over <values.h> as the latter has been removed fromKris Kennaway2002-08-234-0/+44
| | | | | | | | | -current. Noticed by: bento Notes: svn path=/head/; revision=64853
* o Remove redundant dependency on py-tkinter.Hye-Shik Chang2002-08-221-1/+1
| | | | | | | | | o Bump PORTREVISION that I've missed on last commit. Submitted by: Glenn Johnson <glennpj@charter.net> Notes: svn path=/head/; revision=64805
* Add a dependecy to x11-toolkits/pmwHye-Shik Chang2002-08-221-1/+2
| | | | | | | | | PR: 41857 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Approved by: maintainer Notes: svn path=/head/; revision=64797
* New port L-Breeder version 1.0: Allows you to display and breedMario Sergio Fujikawa Ferreira2002-08-219-0/+96
| | | | | | | | | | L-system forms PR: 38725 Submitted by: David Yeske <dyeske@yahoo.com> Notes: svn path=/head/; revision=64720
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