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* biology/bowtie2: 2.2.7 -> 2.2.8Kurt Jaeger2016-05-132-3/+3
* Prevent collision with getline(3)Baptiste Daroussin2016-05-131-0/+300
* Prevent collision with getline(3)Baptiste Daroussin2016-05-131-0/+291
* Prevent collision with getline(3)Baptiste Daroussin2016-05-114-6/+27
* biology/seqan: update 1.3.1 -> 2.1.1Jason Unovitch2016-05-1012-1915/+3706
* New port: biology/seqan-appsJason Unovitch2016-05-105-0/+220
* Add final slash in WWW entryOlivier Duchateau2016-05-091-1/+1
* The BIOM file format (canonically pronounced biome) is designed to be aOlivier Duchateau2016-05-094-0/+48
* During the exp-run in bug 208158, it was found that biology/ugene givesDimitry Andric2016-05-074-0/+36
* DNA query sequences against a protein reference database (BLASTP and BLASTXWen Heping2016-05-065-0/+71
* - Update to 1.14.8Danilo Egea Gondolfo2016-05-013-4/+4
* biology/seqtools: 4.41.1 -> 4.42.1Kurt Jaeger2016-04-222-5/+5
* many ports: mark broken on powerpc64Steve Wills2016-04-211-0/+2
* - Switch to options helpersDmitry Marakasov2016-04-173-16/+17
* - Update to 1.66Wen Heping2016-04-172-4/+3
* - Switch to options helpersDmitry Marakasov2016-04-161-3/+8
* Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:Mikhail Teterin2016-04-163-4/+5
* Update to version 1.22.0, which now unfortunately requires Qt 5.x. AlsoAlexey Dokuchaev2016-04-149-36/+204
* - Add LICENSEDmitry Marakasov2016-04-101-1/+8
* Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.Mathieu Arnold2016-04-0138-148/+148
* - Update to 1.5.0Dmitry Marakasov2016-03-313-23/+11
* - Use more appropriate BROKEN instead of IGNOREDmitry Marakasov2016-03-291-4/+2
* - Update to 5.12.0Wen Heping2016-03-273-5/+7
* - Clarify LICENSEDmitry Marakasov2016-03-241-4/+3
* Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.Dmitry Marakasov2016-03-246-0/+146
* New port: biology/bowtie2.Raphael Kubo da Costa2016-03-236-0/+134
* New port: biology/slclust.Raphael Kubo da Costa2016-03-236-0/+85
* Trimmomatic performs a variety of useful trimming tasks for illuminaWen Heping2016-03-175-0/+41
* New port: biology/p5-transdecoderKurt Jaeger2016-03-165-0/+88
* biology/seqtools: 4.40.0 -> 4.41.1Kurt Jaeger2016-03-143-4/+6
* Always set the DEFAULT github DISTFILE with .tar.gz for EXTRACT_SUFX.Mathieu Arnold2016-03-081-2/+2
* New port: biology/bowtie.Raphael Kubo da Costa2016-03-056-0/+194
* New port: biology/vcftools.Raphael Kubo da Costa2016-02-265-0/+59
* - Update to 3.2.0Wen Heping2016-02-263-34/+62
* - Update to 1.14.7Danilo Egea Gondolfo2016-02-202-3/+3
* - Update to 1.34Wen Heping2016-02-122-3/+3
* biology/seqtools: 4.39.3 -> 4.40.0Kurt Jaeger2016-02-062-3/+3
* biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGSJohn Marino2016-02-011-0/+2
* biology/samtools: document ncurses requirement (USES+=ncurses)John Marino2016-02-011-1/+1
* biology/molden: updated distfile, take maintainerKurt Jaeger2016-01-202-4/+4
* Mark BROKEN: checksum and size mismatchAntoine Brodin2016-01-201-0/+1
* The bedtools utilities are a suite of tools for performing a wide range ofWen Heping2016-01-196-0/+135
* biology/molden: 5.0.7 -> 5.4Kurt Jaeger2016-01-185-192/+799
* mark ports that don't work with Ruby 2.3Steve Wills2016-01-171-0/+1
* Convert LICENSE= "GPLxx # or later" to "GPLxx+"Dmitry Marakasov2016-01-124-4/+4
* Add Public Domain support to ports license framework. You can now useDmitry Marakasov2016-01-121-3/+1
* Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRSPawel Pekala2016-01-091-2/+0
* biology/crux is not jobs safeJohn Marino2015-12-301-0/+2
* biology/htslib: Replace FreeBSD-specific fix with a generic oneJohn Marino2015-12-291-5/+4
* Cleanup GH_* and variables order.Mathieu Arnold2015-12-293-3/+1
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