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* science: remove 'Created by' linesTobias C. Berner2022-07-201-2/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A big Thank You to the original contributors of these ports: * Andreas Fehlner <fehlner@gmx.de> * Brad Huntting <huntting@glarp.com> * Chao Shin <quakelee@cn.FreeBSD.org> * Cheng-Lung Sung <clsung@FreeBSD.org> * Chia-Hsing Yu <me@davidyu.org> * Chris Rees <utisoft@gmail.com> * David Naylor <dbn@FreeBSD.org> * Dmitry Sivachenko <demon@FreeBSD.org> * Ed Schouten <ed@FreeBSD.org> * Eric Freeman <freebsdports@chillibear.com> * Erik B Knudsen * Fernan Aguero <fernan@iib.unsam.edu.ar> * Frederic Culot <frederic@culot.org> * Gea-Suan Lin <gslin@gslin.org> * Glenn Johnson * Greg Lewis <glewis@FreeBSD.org> * Igor Serikov <iserikov@acm.org> * Johannes Dieterich <dieterich@ogolem.org> * Johannes Dieterich <jmd@FreeBSD.org> * Johannes M Dieterich <jmd@FreeBSD.org> * Johannes Meixner <johannes@perceivon.net> * Ju Pengfei <jupengfei@gmail.com> * Kay Lehmann <kay_lehmann@web.de> * Klaus Aehlig <aehlig@linta.de> * Kurt Kanzenbach <kurt@kmk-computers.de> * Leland Wang <llwang@infor.org> * Li-Lun Wang <llwang@infor.org> * Markus Brueffer <markus@FreeBSD.org> * NAKATA Maho <maho@FreeBSD.org> * NAKATA, Maho <maho@FreeBSD.org> * Nakata Maho <chat95@mbox.kyoto-inet.or.jp> * Nakata Maho <maho@FreeBSD.org> * Pav Lucistnik <pav@FreeBSD.org> * Pav Lucistnik <pav@oook.cz> * Pedro F. Giffuni * Pedro F. Giffuni <giffunip@tutopia.com> * Pedro Giffuni * Pedro Giffuni <giffunip@asme.org> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Rong-En Fan <rafan@FreeBSD.org> * Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> * Seamus Venasse <svenasse@polaris.ca> * Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp> * Shin-ya MURAKAMI <murashin@gfd-dennou.org> * Shin-ya Murakami <murashin@gfd-dennou.org> * Stas Timokhin <devel@stasyan.com> * Stephen Montgomery-Smith <stephen@math.missouri.edu> * Steve Wills <steve@mouf.net * Steve Wills <steve@mouf.net> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> * TAKATSU Tomonari <tota@FreeBSD.org> * TAOKA Fumiyoshi * Thierry Thomas <thierry@pompo.net> * Tim Cas <ports@stdrand.com> * Uffe Jakobsen <uffe@uffe.org> * Veniamin Gvozdikov <vg@FreeBSD.org> * Vsevolod Stakhov <vsevolod@highsecure.ru> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Wen heping <wenheping@gmail.com> * Ying-Chieh Liao <ijliao@FreeBSD.org> * Yuri Victorovich <yuri@rawbw.com> * anholt@FreeBSD.org * bacon@smithers.neuro.mcw.edu * batman <batman@udel.edu> * db * gurkan@phys.ethz.ch * ijliao * jbacon * maintainer.freebsd@xpoundit.com * mi * rafan@infor.org * shurd@FreeBSD.org * thierry@pompo.net * will With hat: portmgr
* textproc/libxml2: bump all LIB_DEPENDS consumersCharlie Li2022-04-101-1/+1
| | | | | | | | This is a separate commit to facilitate easier cherry-picking for quarterly. PR: 262853, 262940, 262877, 263126 Approved by: fluffy (mentor)
* textproc/libxml2: bump all dependenciesMatthias Fechner2022-03-261-1/+1
| | | | | This should make sure that all dependent ports will pick up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
* devel/py-qt5, devel/py-sip: Update versionsLoïc Bartoletti2022-03-071-1/+1
| | | | | | | | | | | | - Update sip to 6.5.1 - Update PyQt5 to 5.15.6 - Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5 - Update PyQtSip to 12.9.1 - Update PyQtBuilder to 1.12.2 - Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino) PR: 261685 Exp-run by: antoine
* PyQt: Update sip to 6.5.0, reintroduce sip4 and simplify PyQt framework.Loïc Bartoletti2022-01-271-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | SIP: As mentioned in the update from sip to sip5, this is a transitional version to remove what is deprecated in sip4. Sip6 completely removes the deprecated parts. Unfortunately, some ports — mostly cura things — can not use sip6, so we reintroduce sip4. PyQt: At the same time, we took the opportunity to simplify PyQT and propose only one package as for devel/pyside2. */py-qt5-* have been merged — excepted chart, networkauth and webengine — into devel/py-qt5-pyqt. This allows us to be in adequacy with the packages that the author of these libraries proposes, namely: PyQt - devel/py-qt5-pyqt PyQt-Charts - x11-toolkits/py-qt5-chart PyQt-NetworkAuth – net/py-qt5-networkauth PyQt-WebEngine – www/py-qt5-webengine SIP – devel/py-sip py-sip - devel/py-qt5-sip PyQt-builder - devel/py-qtbuilder Qscintilla - devel/py-qt5-qscintilla2 Reviewed by: diizzy, kde Tested by: kai, rhurlin, arrowd, madpilot Approved by: makc, tcberner, kde Differential Revision: https://reviews.freebsd.org/D33237 Exp-run by: antoine
* graphics/mesa-libs: Bump reverse deps for libglvndKevin Bowling2021-06-221-1/+1
| | | | | | | | | | Per discussion with bapt on helping pkg handle the changing of these deps and avoiding impossible upgrade senarios. PR: 246767 Reviewed by: manu, bapt Approved by: x11 Differential Revision: https://reviews.freebsd.org/D30824
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* - Update math/glm to 0.9.9.8Dmitry Marakasov2021-03-121-1/+1
| | | | Notes: svn path=/head/; revision=568184
* Bump PORTREVISION for science/netcdf shlib changeSunpoet Po-Chuan Hsieh2021-01-261-0/+1
| | | | Notes: svn path=/head/; revision=562679
* science/py-pymol: switch to PYTHON_EXT_SUFFIXDima Panov2020-12-242-4/+4
| | | | Notes: svn path=/head/; revision=559091
* pymol fails to build with python 2.7Antoine Brodin2020-05-291-1/+1
| | | | | | | Reported by: pkg-fallout Notes: svn path=/head/; revision=536956
* Add CONFLICT between science/py-chempy and science/py-pymolYuri Victorovich2020-05-211-0/+2
| | | | Notes: svn path=/head/; revision=536079
* science/py-pymol: Update 2.3.0 -> 2.4.0Yuri Victorovich2020-05-214-441/+395
| | | | Notes: svn path=/head/; revision=536077
* Deprecate a few portsAntoine Brodin2020-02-231-0/+3
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=526925
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-0/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* Unbreak INDEXAntoine Brodin2019-02-161-1/+1
| | | | Notes: svn path=/head/; revision=493038
* science/py-pymol: Update 2.2.0 -> 2.3.0Yuri Victorovich2019-02-125-28/+24
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=492761
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-161-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a symbol matches multiple clauses the last one takes precedence. If the catch-all is last it captures everything. In the case of Qt5 libraries this caused all symbols to have a Qt_5 label while some should have Qt_5_PRIVATE_API. This only affects lld because GNU ld always gives the catch-all lowest priority. Older versions of Qt5Webengine exported some memory allocation symbols from the bundled Chromium. Version 5.9 stopped exporting these [1] but the symbols were kept as weak wrappers for the standard allocation functions to maintain binary compatibility. [2][3] The problem is that the call to the standard function in these weak wrappers is only resolved to the standard function if there's a call to this standard function in other parts of Qt5Webengine, because only then is there a non-weak symbol that takes precedence over the weak one. If there's no such non-weak symbol the call in the weak wrapper resolves to the weak wrapper itself creating an infinite call loop that overflows the stack and causes a crash. Some of the allocation functions are variants of C++ new and delete and it probably depends on the compiler whether these variants are used in other parts of Qt5Webengine. Remove the weak wrappers (make them Linux specific). This isn't binary compatible but we are already breaking that with the changes to the symbol versions. [1] https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4 [2] https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5 [3] https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5 Bump all ports that depend on Qt5. PR: 234070 Exp-run by: antoine Approved by: kde (adridg) Notes: svn path=/head/; revision=490472
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-1/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* pyqt: Change install directories for Python flavor supportTobias C. Berner2018-11-221-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | * PyQt could not be installed for multiple Python versions at the same time, as there were conflicting files. This patch creates Python-version versioned directories for all these, and further installs binaries with a version number. * Note, there might be some hickups for software that depends on on of the .so's provided by PyQt5, which might not be found anymore autmotically, and maybe need some LD-flaggery. * Update PyQt5 to 5.10.1 * Mark www/py-qt5-webengine broken. It is unforuntately no longer compatible with the old qt5-webengine-5.9.4 we ship. PR: 232745 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D8714 Notes: svn path=/head/; revision=485614
* science/py-pymol: Update 2.1.0 -> 2.2.0Yuri Victorovich2018-09-176-39/+52
| | | | | | | | Moved to GitHub. Also update WWW. Notes: svn path=/head/; revision=479957
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-07-291-1/+1
| | | | | | | | | | | | | | | | | in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default. This includes ports - featuring USE_GCC=yes or USE_GCC=any, - featuring USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and those - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x, c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib. PR: 222542 Notes: svn path=/head/; revision=475857
* Use PY_FLAVOR for dependencies.Mathieu Arnold2018-06-201-2/+2
| | | | | | | | | | FLAVOR is the current port's flavor, it should not be used outside of this scope. Sponsored by: Absolight Notes: svn path=/head/; revision=472884
* Move devel/py-msgpack-python to devel/py-msgpackSunpoet Po-Chuan Hsieh2018-04-221-2/+2
| | | | | | | | | | | - Update to 0.5.6 - Update pkg-descr - Update WWW Changes: https://github.com/msgpack/msgpack-python/blob/master/ChangeLog.rst Notes: svn path=/head/; revision=468048
* science/py-pymol: Add GUI options QT5 and TK; Add missing dependency NUMPYYuri Victorovich2018-03-222-2/+38
| | | | | | | Now QT5 is the default, while Tk is still available as a second choice. Notes: svn path=/head/; revision=465257
* science/py-pymol: Update to 2.1.0Yuri Victorovich2018-03-203-35/+105
| | | | | | | | | | | | | | Release notes: https://pymol.org/dokuwiki/?id=media:new21 Port changes: * Fixed shebang in bin/pymol * Misc minor changes Reported by: portscout Notes: svn path=/head/; revision=465071
* - Canonicalize LIB_DEPENDSAntoine Brodin2017-12-192-173/+173
| | | | | | | | | | | - Limit to python 2.7, the dependencies and the plist are not compatible with python3 - Cleanup plist With hat: portmgr (poudriere bulk -a broken) Notes: svn path=/head/; revision=456764
* Re-added port: science/py-pymol: OpenGL based molecular visualization system ↵Yuri Victorovich2017-12-196-0/+1107
(existed 2002/08/13-2014/09/01, deleted in r366862) Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D12902 Notes: svn path=/head/; revision=456763
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