aboutsummaryrefslogtreecommitdiff
path: root/science
Commit message (Collapse)AuthorAgeFilesLines
* Add patch to unbreak with libc++ 10.0+.Koop Mast2013-12-031-0/+11
| | | | | | | | | _S_cur is a libstdc++ enum symbol. Much thanks to rdivacky@ for helping finding this. Notes: svn path=/head/; revision=335596
* Respect CMAKE_BUILD_TYPEMax Brazhnikov2013-12-021-1/+1
| | | | Notes: svn path=/head/; revision=335524
* - Upgrade to 1.3.18.Thierry Thomas2013-11-301-5/+3
| | | | | | | | | | | - Since I'm there, pet portlint and stagify. PR: ports/183821 Submitted by: /me Approved by: maintainer's time-out Notes: svn path=/head/; revision=335296
* Update to 2.2.1Max Brazhnikov2013-11-292-3/+3
| | | | Notes: svn path=/head/; revision=335169
* science/py-pydap: update to 3.1.1William Grzybowski2013-11-293-9/+35
| | | | | | | | PR: ports/183985 Submitted by: maintainer Notes: svn path=/head/; revision=335164
* uncomment MANUAL_PACKAGE_BUILD.Maho Nakata2013-11-291-1/+1
| | | | Notes: svn path=/head/; revision=335136
* Update to 20130501 R1 versionMaho Nakata2013-11-292-7/+6
| | | | Notes: svn path=/head/; revision=335135
* - Fix build with distribute -> setuptools changeWilliam Grzybowski2013-11-271-7/+24
| | | | | | | Approved by: portmgr (bapt, implicit) Notes: svn path=/head/; revision=335046
* Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).David Naylor2013-11-279-9/+0
| | | | | | | | | | | | Since this patch converts all affected ports, bsd.cran.mk no longer supports NO_STAGE and errors out if NO_STAGE is set. Exp-run: ports/184216 Reviewed by: bdrewery Approved by: portsmgr, wen Notes: svn path=/head/; revision=335044
* - Upgrade to 1.0.4;Thierry Thomas2013-11-263-12/+9
| | | | | | | | | | | - Stagify; - let the port use a specific python version (A). Submitted by: mva (A) Notes: svn path=/head/; revision=334976
* science/gromacs: Update to version 4.6.4William Grzybowski2013-11-263-42/+111
| | | | | | | | | | | - Update to version 4.6.4 - Allow staging PR: ports/184224 Submitted by: KATO Tsuguru <tkato432 yahoo.com> Notes: svn path=/head/; revision=334960
* Mark deprecated with a deadline of 33 days from today since this isGerald Pfeifer2013-11-251-0/+3
| | | | | | | | | | | one of two ports that makes us keep lang/gcc34 (which does not even support FreeBSD 10 and later) and general infrastructure and it does not even build on FreeBSD 9 nor amd64. Approved by: portmgr (itetcu, 2013-03-31) Notes: svn path=/head/; revision=334806
* Mark deprecated with a deadline of 33 days from today since this isGerald Pfeifer2013-11-251-0/+3
| | | | | | | | | | one of two ports that makes us keep lang/gcc34 (which does not even support FreeBSD 10 and later) and general infrastructure. Approved by: portmgr (itetcu, 2013-03-31) Notes: svn path=/head/; revision=334805
* - Convert to USES=qmake (and other USES while I'm here)Max Brazhnikov2013-11-221-6/+3
| | | | | | | | | | - Add state support - Convert LIB_DEPENDS to new style, adjust USE_QT4 components, etc. Approved by: portmgr (blanket approval) Notes: svn path=/head/; revision=334586
* - Update WWW:Sunpoet Po-Chuan Hsieh2013-11-202-2/+2
| | | | | | | | | | | - http://cheeseshop.python.org/ -> https://pypi.python.org/ - http://pypi.python.org/ -> https://pypi.python.org/ With hat: python Approved by: bapt (portmgr) Notes: svn path=/head/; revision=334452
* - Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR)Rusmir Dusko2013-11-201-1/+1
| | | | | | | Approved by: wg (mentor) Notes: svn path=/head/; revision=334422
* - Convert to dos2unix.mkMathieu Arnold2013-11-192-3/+3
| | | | | | | - While at it convert to gmake.mk ports that still USE_GMAKE. Notes: svn path=/head/; revision=334361
* - Chase x11-toolkits/blt library name changePietro Cerutti2013-11-191-5/+3
| | | | | | | - Bump PORTREVISION Notes: svn path=/head/; revision=334301
* Mark for removal on 2013-12-05, depends on expired textproc/libxml (*)Rene Ladan2013-11-191-0/+3
| | | | | | | | | | | | (*) Actually it seems to depend on textproc/libxml2, but then it was still broken because of Tcl errors. PR: ports/183680 Submitted by: myself Approved by: maintainer timeout (bkoenig@alpha-tierchen.de , 14 days) Notes: svn path=/head/; revision=334293
* - Fix distinfoWen Heping2013-11-181-2/+2
| | | | | | | Spotted by: olgeni@ (Thanks!) Notes: svn path=/head/; revision=334211
* - Update to 2.2.0Max Brazhnikov2013-11-183-41/+4
| | | | | | | - Use autoplist Notes: svn path=/head/; revision=334204
* - Update to 0.13.1Wen Heping2013-11-172-6/+5
| | | | Notes: svn path=/head/; revision=334091
* science/py-h5py: update to 2.2.0William Grzybowski2013-11-133-15/+27
| | | | | | | | | | | | | | - Update to 2.2.0 - Add LICENSE (BSD) - Add DOCS - Pass maintainership to submitter PR: ports/183519 Submitted by: Johannes Jost Meixner <xmj chaot.net> Approved by: maintainer (timeout, 2 weeks, 3 times) Notes: svn path=/head/; revision=333728
* Add upstream patch to fix the build with libc++.Raphael Kubo da Costa2013-11-131-0/+84
| | | | | | | | | | The original commit has been slightly tuned so that it builds with the code in the latest stable release. Approved by: makc (maintainer) Notes: svn path=/head/; revision=333701
* Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;Brendan Fabeny2013-11-1310-9/+11
| | | | | | | | | adjust dependent ports Reviewed by: pfg, thierry, tota Notes: svn path=/head/; revision=333659
* - Take maintainershipSunpoet Po-Chuan Hsieh2013-11-101-1/+1
| | | | Notes: svn path=/head/; revision=333367
* - Fix build with USE_GCC on headWen Heping2013-11-101-3/+5
| | | | | | | | | - Add LICENSE - Support stage - Drop maintainership Notes: svn path=/head/; revision=333365
* - Update to version 13.2.3 [1]Pawel Pekala2013-11-074-112/+26
| | | | | | | | | | | | | - Remove leading article, revise capitalization in COMMENT - Convert to new options framework - Support staging - Add launch script and desktop entry file PR: ports/182482 [1] Submitted by: Max Sterling <maxclsb@gmail.com> [1] Notes: svn path=/head/; revision=333140
* - Fix PKGNAME collisionSunpoet Po-Chuan Hsieh2013-11-061-2/+1
| | | | | | | | - Remove LATEST_LINK - Remove NO_STAGE for slave port Notes: svn path=/head/; revision=333016
* - Fix PKGNAME collisionSunpoet Po-Chuan Hsieh2013-11-061-2/+2
| | | | Notes: svn path=/head/; revision=333015
* Support STAGEDIR.Vanilla I. Shu2013-11-0612-61/+52
| | | | Notes: svn path=/head/; revision=332938
* Use PYDISTUTILS_AUTOPLIST.Dmitry Sivachenko2013-11-052-1016/+1
| | | | | | | Suggested by: mva Notes: svn path=/head/; revision=332841
* Update to version 0.14.1Dmitry Sivachenko2013-11-053-38/+147
| | | | Notes: svn path=/head/; revision=332835
* Add my upstream commit that fixes the build with libc++.Raphael Kubo da Costa2013-11-031-0/+50
| | | | | | | PR: ports/182852 Notes: svn path=/head/; revision=332652
* - Update to version 10Pawel Pekala2013-11-023-24/+27
| | | | | | | | | | - Support staging PR: ports/181888 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=332523
* - Take maintainershipDmitry Marakasov2013-10-311-1/+1
| | | | | | | | PR: 183450 Submitted by: Jason Bacon <jwbacon@tds.net> (maintainer) Notes: svn path=/head/; revision=332282
* - Update MASTER_SITES macro, xfce4-equake-plugin is now hosted onOlivier Duchateau2013-10-312-6/+6
| | | | | | | | archive.xfce.org - Support STAGEDIR Notes: svn path=/head/; revision=332266
* graphics/ilmbaseRusmir Dusko2013-10-311-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Update to 2.0.1 - Change master sites to SAVANNAH - Change maintainer email to @FreeBSD.org - Remove conflict with non existent Port - USES pathfix pkgconfig - Add executable - Add DOCS Option - Support STAGEDIR and add OPTIONS_SUB - Use pathfix instead of simple patches - Adjust patches - Change WWW graphics/OpenEXR - Update to 2.0.1 - Change master sites to SAVANNAH - Change maintainer email to @FreeBSD.org - Use the new format for LIB_DEPENDS - USES gmake pathfix pkgconfig - Add DOCS and EXAMPLES Options - Support STAGEDIR and add OPTIONS_SUB - Change REINPLACE_CMD - Add extra patch for EXAMPLES - Remove obsolete patches - Bump dependent ports' revisions Approved by: pawel / wg (mentors) Notes: svn path=/head/; revision=332189
* - Update to 2.1.1Rusmir Dusko2013-10-305-204/+27
| | | | | | | | | | | | | - Remove leading article from COMMENT - Use default dependency for science/hdf5-18 - Add patch PR: ports/181483 Submitted by: Johannes Meixner <xmj@chaot.net> Approved by: wg (mentor) Notes: svn path=/head/; revision=332177
* - Update to version 2.33Pawel Pekala2013-10-304-50/+54
| | | | | | | | | | | | | - Convert to new LIB_DEPENDS format - Use options helpers and plist substitution - Add support for STAGEDIR - Reformat pkg-descr PR: ports/182802 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=332175
* - Update to version 0.6.3Pawel Pekala2013-10-306-205/+56
| | | | | | | | | | | - Add PLOTUTILS option - Support staging PR: ports/182800 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Notes: svn path=/head/; revision=332159
* science/py-pydap: Implementation of the Opendap/DODS protocolWilliam Grzybowski2013-10-305-0/+46
| | | | | | | | | | | | | | | | | Pydap is an implementation of the Opendap/DODS protocol, written from scratch. You can use Pydap to access scientific data on the internet without having to download it; instead, you work with special array and iterable objects that download data on-the-fly as necessary, saving bandwidth and time. The module also comes with a robust-but-lightweight Opendap server, implemented as a WSGI application. WWW: https://pypi.python.org/pypi/Pydap PR: ports/181687 Submitted by: Johannes Meixner <xmj chaot.net> Notes: svn path=/head/; revision=332132
* - Add stage supportSteve Wills2013-10-301-1/+0
| | | | Notes: svn path=/head/; revision=332049
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-2665-32/+65
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=331644
* - Support stagingMax Brazhnikov2013-10-234-8/+5
| | | | | | | | | | - Use new LIB_DEPENDS syntax - Use options helpers - Convert to USES - Minor changes/fixes Notes: svn path=/head/; revision=331383
* - Remove manual creation and removal of share/applications, as it's now in ↵Dmitry Marakasov2013-10-226-6/+0
| | | | | | | | | the mtree (categories starting with [st]) Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=331274
* - Add dependency on pkgconfig when building with cairo support [1]Max Brazhnikov2013-10-172-28/+20
| | | | | | | | | | - Support staging - Use option helpers Reported by: Andreas Nilsson via mail [1] Notes: svn path=/head/; revision=330663
* - Update to 0.12.1Wen Heping2013-10-162-3/+3
| | | | Notes: svn path=/head/; revision=330561
* Fix index by removing a hidden dependency on vtk4Baptiste Daroussin2013-10-146-315/+0
| | | | Notes: svn path=/head/; revision=330279
* Remove ports depending on vtk4Baptiste Daroussin2013-10-146-117/+0
| | | | | | | Approved by: yuri@irfu.se (maintainer) Notes: svn path=/head/; revision=330276