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* science/py-pycsw: Add CPE informationStefan Eßer2021-10-141-1/+1
| | | | Approved by: portmgr (blanket)
* science/py-gsd: Update 2.4.2 -> 2.5.0Yuri Victorovich2021-10-142-4/+4
| | | | Reported by: portscout
* science/py-tensorflow: Add CPE informationStefan Eßer2021-10-141-1/+2
| | | | Approved by: portmgr (blanket)
* science/hdf5-18: Add CPE informationStefan Eßer2021-10-141-1/+2
| | | | Approved by: portmgr (blanket)
* science/hdf5: Add CPE informationStefan Eßer2021-10-141-2/+2
| | | | Approved by: portmgr (blanket)
* science/rubygem-rgeo-proj4: Update to 3.1.0Po-Chuan Hsieh2021-10-132-4/+4
| | | | Changes: https://github.com/rgeo/rgeo-proj4/blob/master/History.md
* science/openmc: Unbreak LIBMESH option by switching to mpichYuri Victorovich2021-10-121-4/+4
| | | | As it turned out LibMesh fails to compile with OpenMPI-{3,4}
* science/py-tensorflow: fix build on powerpc64Piotr Kubaj2021-10-123-3/+59
| | | | | | | The bundled abseil needs the same patch that was already upstreamed. Approved by: portmgr (blanket: build fix) PR: 259082
* *: Clean up some thingsTobias Kortkamp2021-10-122-3/+1
| | | | | | | | | | | | - Fix typos - Fix overwritten variables with focus on master/slave ports - Remove unreferenced variables - Sort categories - Remove redundant option descriptions - Clean up commented PORTREVISION - Add missing USES Reported by: portscan
* science/py-pydicom: Update to 2.2.2Wen Heping2021-10-122-4/+4
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* science/afni: update to 21.3.00Fernando Apesteguía2021-10-112-4/+4
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* science/tinker: Update 8.9.5 -> 8.10.1Yuri Victorovich2021-10-113-4/+5
| | | | Reported by: portscout
* science/py-OpenMC: New port: Monte Carlo neutron and photon transport ↵Yuri Victorovich2021-10-114-0/+57
| | | | simulation code (Python)
* science/openmc: New port: Monte Carlo neutron and photon transport ↵Yuri Victorovich2021-10-116-0/+225
| | | | simulation code
* INSTALLS_ICONS: retire the macro and rework the related dependenciesBaptiste Daroussin2021-10-107-7/+0
| | | | | | | While here, make sure gtk-update-icon-cache is only on run dependency where added as a dependency Enforce gtk3 to depend on gtk-update-icon-cache (previously it was inheriting the dependency)
* science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; ↵Yuri Victorovich2021-10-103-6/+23
| | | | Build in parallel
* science/py-netCDF4: Update version 1.3.1=>1.5.7Wen Heping2021-10-102-9/+8
| | | | | | PR: 259042 Reported by: wen Relnotes: https://github.com/Unidata/netcdf4-python/releases/tag/v1.5.7rel
* devel/onetbb: Update to 2021.4.0Ganael LAPLANCHE2021-10-102-2/+2
| | | | Release notes: https://software.intel.com/content/www/us/en/develop/articles/intel-oneapi-threading-building-blocks-release-notes.html
* science/shelxle: Update 1.0.1326 -> 1.0.1328Yuri Victorovich2021-10-102-4/+4
| | | | Reported by: portscout
* science/py-PyNE: New port: PyNE: The Nuclear Engineering ToolkitYuri Victorovich2021-10-106-0/+342
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* science/dynare: fix build on non-amd64 64-bit architecturesPiotr Kubaj2021-10-082-0/+40
| | | | | | The current Makefile checks only for amd64. Tested for no breakage on amd64.
* KDE: Update KDE Gear to 21.08.2Tobias C. Berner2021-10-072-6/+6
| | | | | | | | | | | | | | | | | | Thursday, 7 October 2021 Over 120 individual programs plus dozens of programmer libraries and feature plugins are released simultaneously as part of KDE Gear. Today they all get new bugfix source releases with updated translations, including: * kmail: Fix an infinite SSL error dialog loop * konqueror: Make it compatible with KIO 5.86.0 and don’t open every URL in a new window * libksane: Fix multi page detection with certain scanners Full announcement: https://kde.org/announcements/gear/21.08.2/
* science/hypre: Update 2.22.1 -> 2.23.0Yuri Victorovich2021-10-073-39/+26
| | | | Reported by: portscout
* science/jmol: Update 14.31.53 -> 14.31.57Yuri Victorovich2021-10-062-4/+4
| | | | Reported by: portscout
* science/shelxle: Update 1.0.1322 -> 1.0.1326Yuri Victorovich2021-10-062-4/+4
| | | | Reported by: portscout
* science/afni: update to 21.2.10Fernando Apesteguía2021-10-062-4/+4
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* science/opensph: 0.3.8 release was moved to include the OpebVDB fixYuri Victorovich2021-10-032-6/+6
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* science/opensph: Update 0.3.7 -> 0.3.8Yuri Victorovich2021-10-024-20/+21
| | | | oneTBB is now supported.
* science/tinker: Update 8.9.4 -> 8.9.5Yuri Victorovich2021-10-024-7/+13
| | | | Reported by: portscout
* science/openems: fix build on powerpc64*Piotr Kubaj2021-10-011-0/+11
| | | | Add FreeBSD names for 64-bit POWER to the check.
* science/afni: update to 21.2.09Fernando Apesteguía2021-10-012-4/+4
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* cleanup: drop support for EOL FreeBSD 11.XRene Ladan2021-09-301-1/+0
| | | | | | | | | | | | | | | | | Search criteria used: - 11.4 - OSREL* - OSVER* - *_FreeBSD_11 Input from: - adridg: devel/qca-legacy - jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds - sunpoet: security/p5-*OpenSSL* Reviewed by: doceng, kde, multimedia, perl, python, ruby, rust Differential Revision: https://reviews.freebsd.org/D32008 Test Plan: make index
* science/lammps: Update patch_2Jul2021 -> stable_29Sep2021Yuri Victorovich2021-09-303-17/+26
| | | | Reported by: upstream notification
* science/votca: Update 2021.2 -> 2021.2-18560Yuri Victorovich2021-09-293-4/+1786
| | | | | | This fixed 6 failing testcases. The patch fixing these testcases doesn't apply to 2021.2, so the port is updated to the latest commit.
* science/libaec: Update to 1.0.6Po-Chuan Hsieh2021-09-273-6/+6
| | | | Changes: https://gitlab.dkrz.de/k202009/libaec/-/blob/master/CHANGELOG.md
* science/py-spaghetti: Update to 1.6.4Po-Chuan Hsieh2021-09-272-4/+4
| | | | Changes: https://github.com/pysal/spaghetti/releases
* science/py-h5py: Update version requirement of BUILD_DEPENDSPo-Chuan Hsieh2021-09-271-1/+1
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* science/libghemical: Remove LD_PRELOAD vecause it configured now without itYuri Victorovich2021-09-261-2/+0
| | | | | PR: 258733 Reported by: mikael
* science/nwchem: Mark as broken on aarch64.Mikael Urankar2021-09-261-0/+2
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* science/shelxle: Update 1.0.1320 -> 1.0.1322Yuri Victorovich2021-09-262-4/+4
| | | | Reported by: portscout
* science/siconos: Update 4.4.0.rc4 -> 4.4.0Yuri Victorovich2021-09-262-5/+6
| | | | | | PYTHON option is broken. Reported by: portscout
* science/R-cran-fastICA: Update to 1.2-3Guangyuan Yang2021-09-252-4/+4
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* science/getdp: Update to 3.4.0.Stephen Montgomery-Smith2021-09-242-5/+4
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* science/votca: Update 2021.1 -> 2021.2Yuri Victorovich2021-09-243-75/+114
| | | | Reported by: portscout
* science/py-pyteomics: Update to 4.5Po-Chuan Hsieh2021-09-212-6/+5
| | | | | Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
* science/py-pygeodesy: Update to 21.9.16Po-Chuan Hsieh2021-09-212-4/+4
| | | | Changes: https://github.com/mrJean1/PyGeodesy/commits/master
* science/eccodes: Update to 2.23.0Po-Chuan Hsieh2021-09-213-4/+499
| | | | Changes: https://confluence.ecmwf.int/display/ECC/Latest+news
* science/py-chempy: Update 0.8.1 -> 0.8.2Yuri Victorovich2021-09-212-8/+8
| | | | Reported by: portscout
* math/armadillo: Update to 10.6.2Danilo Egea Gondolfo2021-09-212-1/+2
| | | | Drop maintainership.
* science/py-segregation: Update to 2.1.0Po-Chuan Hsieh2021-09-212-4/+9
| | | | Changes: https://github.com/pysal/segregation/releases