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* science/scidavis: update to 2.4.0Max Brazhnikov2021-05-087-116/+51
| | | | | | - Switch to cmake build system - Remove stale patches - Enable Python support by default
* KDE_INVENT: drop WRKSRC hackAdriaan de Groot2021-05-071-3/+3
| | | | | | | | | | | | | | When USE_GITLAB was changed to follow upstream GitLab's change in the way tag-tarballs were delivered, a hack was added to KDE_INVENT because **that** GitLab installation lagged behind (by one minor revision, Ithink). Now KDE's installation has been upgraded, it had the same tag-tarball layout as other GitLabs and the hack is no longer needed. The ports that use KDE_INVENT have their distinfo updated, but the ports themselves do not change so I'm not bumping PORTREVISION; it's the same git checkout, just with different icing on top.
* science/highfive: Update 2.2.2 -> 2.3Yuri Victorovich2021-05-073-4/+6
| | | | Reported by: portscout
* science/afni: update to 21.1.04Fernando Apesteguía2021-05-072-4/+4
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* science/abinit: Update 9.4.1 -> 9.4.2Yuri Victorovich2021-05-072-4/+4
| | | | Reported by: portscout
* science/gromacs: Update 2021.1 -> 2021.2Yuri Victorovich2021-05-072-4/+4
| | | | Reported by: portscout
* science/py-dipy: Update 1.4.0 -> 1.4.1Yuri Victorovich2021-05-062-4/+4
| | | | Reported by: portscout
* Deorbit RESTRICTED && NO_CDROM, part two.Mathieu Arnold2021-05-063-6/+18
| | | | | | | | | Move ports to the licenses framework. RESTRICTED → auto-accept (unless expressly stated otherwise) NO_CDROM → dist-mirror pkg-mirror auto-accept Differential Revision: https://reviews.freebsd.org/D30010
* science/shelxle: Update 1.0.1256 -> 1.0.1258Yuri Victorovich2021-05-062-4/+4
| | | | Reported by: portscout
* science/agrum: Update 0.20.1 -> 0.20.2Yuri Victorovich2021-05-062-5/+5
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* science/qbox: Update 1.73.1 -> 1.73.2Yuri Victorovich2021-05-062-5/+4
| | | | Reported by: portscout
* science/libcint: Update 4.3.0 -> 4.4.0Yuri Victorovich2021-05-052-6/+13
| | | | Reported by: portscout
* science/py-pymatgen: Update 2022.0.5 -> 2022.0.7Yuri Victorovich2021-05-052-7/+7
| | | | Reported by: portscout
* science/py-moltemplate: Update 2.19.9 -> 2.19.10Yuri Victorovich2021-05-052-4/+4
| | | | Reported by: portscout
* science/shelxle: Update 1.0.1246 -> 1.0.1256Yuri Victorovich2021-05-052-4/+4
| | | | Reported by: portscout
* science/py-pyteomics: Remove PYNUMPYPo-Chuan Hsieh2021-05-021-2/+2
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* science/py-h5py: Remove PYNUMPYPo-Chuan Hsieh2021-05-021-1/+1
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* science/py-asdf: Update to 2.7.4Po-Chuan Hsieh2021-05-022-5/+5
| | | | | | - Update LICENSE_FILE Changes: https://github.com/asdf-format/asdf/releases
* science/rubygem-rgeo-proj4: Update to 3.0.0Po-Chuan Hsieh2021-05-012-5/+4
| | | | Changes: https://github.com/rgeo/rgeo-proj4/blob/master/Hisory.md
* science/py-eccodes: Update to 1.3.2Po-Chuan Hsieh2021-05-012-4/+4
| | | | Changes: https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
* science/gchemutils: drop wrong dependency on gtkglextBaptiste Daroussin2021-05-011-3/+2
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* Clean up some thingsTobias Kortkamp2021-05-011-1/+1
| | | | | | | | | | - Fix typos - Remove duplicate variables - Remove nop variables - Clean up commented PORTREVISION - Add missing USES Reported by: portscan
* science/afni: update to 21.1.03Fernando Apesteguía2021-04-302-4/+4
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* science/shelxle: Update 1.0.1244 -> 1.0.1246Yuri Victorovich2021-04-292-4/+4
| | | | Reported by: portscout
* Unbreak ports after devel/py-gitpython's PORTNAME changeGuangyuan Yang2021-04-291-2/+2
| | | | | | | PR: 255489 Fixes: f133c410c6d97254810f4f0fbd329e42b9eaf3a1 Approved by: lwhsu, portmgr (blanket) Differential Revision: https://reviews.freebsd.org/D30039
* science/py-eccodes: Update to 1.3.1Po-Chuan Hsieh2021-04-292-4/+4
| | | | Changes: https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
* science/eccodes: Update to 2.21.0Po-Chuan Hsieh2021-04-293-16/+180
| | | | Changes: https://confluence.ecmwf.int/display/ECC/Latest+news
* science/siesta: Update 4.0.2 -> 4.1.5Yuri Victorovich2021-04-293-13/+14
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* science/py-moltemplate: Update 2.19.8 -> 2.19.9Yuri Victorovich2021-04-282-4/+4
| | | | Reported by: portscout
* science/libcint: Update 4.1.3 -> 4.3.0Yuri Victorovich2021-04-262-4/+4
| | | | Reported by: portscout
* science/fisicalab: mark BROKENDmitry Marakasov2021-04-261-1/+3
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* science/frontistr adding FrontISTRThierry Thomas2021-04-265-0/+71
| | | | | This is an Open-Source Large-Scale Parallel FEM Program for Nonlinear Structural Analysis.
* science/rubygem-rgeo: Update to 2.3.0Po-Chuan Hsieh2021-04-252-4/+4
| | | | Changes: https://github.com/rgeo/rgeo/blob/master/History.md
* science/py-eccodes: Update to 1.3.0Po-Chuan Hsieh2021-04-253-24/+6
| | | | Changes: https://github.com/ecmwf/eccodes-python/blob/develop/CHANGELOG.rst
* science/py-skrebate: Add py-skrebate 0.62Po-Chuan Hsieh2021-04-254-0/+37
| | | | | | | | | | | | This package includes a scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning. These Relief-Based algorithms (RBAs) are designed for feature weighting/selection as part of a machine learning pipeline (supervised learning). Presently this includes the following core RBAs: ReliefF, SURF, SURF*, MultiSURF*, and MultiSURF. Additionally, an implementation of the iterative TuRF mechanism and VLSRelief is included. WWW: https://github.com/EpistasisLab/scikit-rebate
* science/shelxle: Update 1.0.1242 -> 1.0.1244Yuri Victorovich2021-04-252-4/+4
| | | | Reported by: portscout
* science/py-PyFR: Update 1.10.0 -> 1.12.0Yuri Victorovich2021-04-242-10/+11
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* science/libgridxc: Update 0.8.5 -> 0.9.6Yuri Victorovich2021-04-248-207/+37
| | | | Project moved to GitLab.
* Cleanup LIB_DEPENDSAntoine Brodin2021-04-231-1/+1
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* science/mbdyn: Unbreak build by properly implementing get_nprocs() for FreeBSD.Yuri Victorovich2021-04-227-4/+89
| | | | | | | | It looks like it was only built for one CPU before and didn't fail. Some change in the underlying libraries triggered the build to become multi-CPU and it began failing because get_nprocs() wasn't available for FreeBSD and also was't properly linked to the surrounding code. Reported by: fallout
* Update KDE Gear to 21.04Tobias C. Berner2021-04-223-11/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | KDE Gear 21.04 Thursday, 22 April 2021 Welcome to KDE Gear ⚙️ 21.04! KDE produces literally dozens of apps for work, play, education, and creativity. Kontact, for example, gives you control over all your email, contact, and agenda; Itinerary keeps you up to date with everything you need regarding your trips; the KAlgebra graphing calculator works equally well on your desktop and your phone; Cantor provides you with an intuitive way of analyzing data and graphing the results; and Kdenlive makes cutting and building sophisticated-looking videos not only easy, but fun as well. These are but a few of the apps releasing new updates today. When combined with the KDE’s powerful Plasma desktop, they provide you with most, if not all, the tools you need to be productive in a versatile and flexible Linux^WFreeBSD environment. But you don’t even need to run Linux! Many of the apps in this announcement work on Windows, macOS, and Android as well. This is what convergent means for KDE: use your favorite apps anywhere, on any system, on your work computer, mobile or even on your TV! And, remember: KDE’s apps, the Plasma desktop, Plasma Mobile, Plasma BigScreen and all the rest of KDE’s software are free and open source. No licensing, no hidden costs, no spying. Share them with your friends, install them at work, or use them in your school lab. It is your software to enjoy where and how you want. Full announcement and changelogs: https://kde.org/announcements/gear/21.04/
* science/py-rmf: Update 1.2 -> 1.3Yuri Victorovich2021-04-222-5/+5
| | | | Reported by: portscout
* science/rmf: Update 1.2 -> 1.3Yuri Victorovich2021-04-223-4/+5
| | | | Reported by: portscout
* science/py-rmf: Update 1.1 -> 1.2Yuri Victorovich2021-04-215-29/+39
| | | | Reported by: portscout
* science/rmf: Update 1.1 -> 1.2Yuri Victorovich2021-04-215-23/+33
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* science/qmcpack: Update 3.10.0 -> 3.11.0Yuri Victorovich2021-04-193-15/+6
| | | | Reported by: portscout
* science/agrum: Update 0.19.3 -> 0.20.1Yuri Victorovich2021-04-183-21/+22
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* science/afni: update to 21.1.02Fernando Apesteguía2021-04-183-6/+5
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* science/py-scikit-optimize: Remove PYNUMPYPo-Chuan Hsieh2021-04-181-1/+1
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* science/py-pyteomics: Update to 4.4.2Po-Chuan Hsieh2021-04-182-4/+4
| | | | | Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
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