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* science/netcdf-fortran: Update to 4.5.4Po-Chuan Hsieh2022-03-076-8/+9
| | | | | | | - Update MASTER_SITES - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-fortran/releases
* science/netcdf-cxx: Update MASTER_SITESPo-Chuan Hsieh2022-03-071-2/+1
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* science/netcdf: Update to 4.8.1Po-Chuan Hsieh2022-03-0714-256/+154
| | | | | | | - Update MASTER_SITES - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/Unidata/netcdf-c/releases
* science/cdo: Update to 2.0.4Po-Chuan Hsieh2022-03-075-15/+15
| | | | Changes: https://code.mpimet.mpg.de/projects/cdo/news
* science/py-asdf-transform-schemas: Add py-asdf-transform-schemas 0.2.2Po-Chuan Hsieh2022-03-074-0/+39
| | | | | | | | This package provides ASDF schemas for validating transform tags. Users should not need to install this directly; instead, install an implementation package such as asdf-astropy, which includes asdf-transform-schemas as a dependency. WWW: https://github.com/asdf-format/asdf-transform-schemas
* science/py-asdf-standard: Add py-asdf-standard 1.0.1Po-Chuan Hsieh2022-03-074-0/+39
| | | | | | | | | ASDF standard This document describes the Advanced Scientific Data Format (ASDF), pronounced AZ-diff. WWW: https://github.com/asdf-format/asdf-standard
* devel/py-qt5, devel/py-sip: Update versionsLoïc Bartoletti2022-03-074-2/+4
| | | | | | | | | | | | - Update sip to 6.5.1 - Update PyQt5 to 5.15.6 - Update PyQtChart, PyQtNetworkAuth and PyQtWebengine to 5.15.5 - Update PyQtSip to 12.9.1 - Update PyQtBuilder to 1.12.2 - Add ${_MAKE_JOBS} for pyqt.mk (reported by Tatsuki Makino) PR: 261685 Exp-run by: antoine
* science/R-cran-FAdist: upgrade to 2.4Thierry Thomas2022-03-062-5/+4
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* science/rdkit: Update 2021.09.4 -> 2021.09.5Yuri Victorovich2022-03-062-8/+8
| | | | Reported by: portscout
* science/py-netCDF4: Update version 1.5.7=>1.5.8Muhammad Moinur Rahman2022-03-052-10/+9
| | | | | Relnotes: https://github.com/Unidata/netcdf4-python/releases/tag/v1.5.8rel
* science/afni: update to 22.0.15Fernando Apesteguía2022-03-042-5/+4
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* KDE: Update KDE Gear to 21.12.3Tobias C. Berner2022-03-032-6/+6
| | | | | | | | | | | | | | | | | | | | | Thursday, 3 March 2022 Over 120 individual programs plus dozens of programmer libraries and feature plugins are released simultaneously as part of KDE Gear. Today they all get new bugfix source releases with updated translations, including: * kcron: Improve temporary file handling * kio-extras: SFTP can use random access * kontact: Fix Manager Crash when clicking New Distro and app store packagers should update their application packages. Changelog: https://kde.org/announcements/changelogs/gear/21.12.3/ Release Notes: https://community.kde.org/KDE_Gear/21.12_Release_notes
* science/gramps: Mark DEPRECATEDMuhammad Moinur Rahman2022-02-281-0/+3
| | | | | | | | | | - Requires py-bsddb3 which depends on upstream EOLd db5 which is set to expire on 2022-06-30 in the tree. - If you want this port to stay chase upstream to use py-berkeleydb from https://www.jcea.es/programacion/pybsddb.htm which is already in the tree. PR: 262136
* science/netcdf-fortran: Clean up after 4.5.3 updatePo-Chuan Hsieh2022-02-281-7/+0
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* astro/cfitsio: Update to 4.0.0Po-Chuan Hsieh2022-02-282-2/+2
| | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt
* science/healpix: Fix build with cfitsio 4.0.0+Po-Chuan Hsieh2022-02-281-0/+32
| | | | Obtained from: https://sourceforge.net/p/healpix/code/1189/tree//branches/branch_v380r1183/src/cxx/cxxsupport/fitshandle.cc?diff=50dae5f434309d7d74da16d0:1188
* devel/protobuf: Update to 3.19.4Po-Chuan Hsieh2022-02-281-0/+1
| | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/protocolbuffers/protobuf/releases
* science/py-pyteomics: Update to 4.5.2Po-Chuan Hsieh2022-02-282-4/+4
| | | | | Changes: https://github.com/levitsky/pyteomics/releases https://pyteomics.readthedocs.io/en/latest/changelog.html
* science/py-pygeodesy: Update to 22.1.22Po-Chuan Hsieh2022-02-282-5/+5
| | | | Changes: https://github.com/mrJean1/PyGeodesy/commits/master
* science/py-phonopy: Update 2.12.0 -> 2.13.1Yuri Victorovich2022-02-282-4/+4
| | | | Reported by: portscout
* science/py-moltemplate: Update 2.20.2 -> 2.20.3Yuri Victorovich2022-02-282-4/+4
| | | | Reported by: portscout
* science/py-qcengine: Update 0.21.0 -> 0.22.0Yuri Victorovich2022-02-282-5/+5
| | | | Reported by: portscout
* science/qmcpack: Correct python dependency; Fix tests.Yuri Victorovich2022-02-271-4/+6
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* science/qmcpack: Update 3.12.0-244 -> 3.13.0Yuri Victorovich2022-02-272-6/+5
| | | | Reported by: portscout
* science/mctc-lib: Update 0.2.4 -> 0.2.5Yuri Victorovich2022-02-273-6/+9
| | | | Reported by: portscout
* science/py-PyFR: Update 1.12.3 -> 1.13.0Yuri Victorovich2022-02-263-7/+8
| | | | Reported by: portscout
* science/jmol: Update 14.32.24 -> 14.32.25Yuri Victorovich2022-02-252-4/+4
| | | | Reported by: portscout
* science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224Yuri Victorovich2022-02-252-10/+10
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* math/libqalculate: Update to 4.0.0Jason E. Hale2022-02-251-0/+1
| | | | | | math/qalculate: Update to 4.0.0 Bump PORTREVISION on math/libqalculate consumers due to shlib bump
* math/ipopt: Update 3.12.13 -> 3.14.4Yuri Victorovich2022-02-241-1/+1
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* science/plumed: Update 2.8b -> 2.8.0Yuri Victorovich2022-02-232-5/+4
| | | | Reported by: portscout
* science/jmol: Update 14.32.21 -> 14.32.24Yuri Victorovich2022-02-233-4/+9
| | | | Reported by: portscout
* science/shelxle: Update 1.0.1360 -> 1.0.1365Yuri Victorovich2022-02-232-4/+4
| | | | Reported by: portscout
* science/afni: update to 22.0.11Fernando Apesteguía2022-02-223-4/+5
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* science/py-hoomd-blue: Update 3.0.0-beta.13 -> 3.0.0-beta.14Yuri Victorovich2022-02-213-57/+18
| | | | Reported by: portscout
* math/qhull: Renaming portsStephen Montgomery-Smith2022-02-182-3/+4
| | | | | | | qhull renamed to qhull7. qhull8 renamed to qhull. qhull7 marked deprecated. Dependencies updated.
* science/afni: switch to qhull from math/qhull8Thierry Thomas2022-02-181-1/+2
| | | | Chase my previous commits: afni uses the binary qhull as a runtime dependency.
* science/py-PyNE: Update 0.7.5 -> 0.7.6Yuri Victorovich2022-02-183-16/+20
| | | | Reported by: portscout
* science/{,py-}segyio: Update 1.9.8 -> 1.9.9Yuri Victorovich2022-02-184-8/+9
| | | | Reported by: portscout
* science/grib_api: use openjpeg15 includes in Right Way (tm)Dima Panov2022-02-181-1/+2
| | | | Sponsored by: Netzkommune GmbH
* science/afni: update to 22.0.10Fernando Apesteguía2022-02-172-4/+4
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* science/tfel: upgrade to 4.0.0Thierry Thomas2022-02-164-179/+156
| | | | Release notes at <http://tfel.sourceforge.net/release-notes-4.0.html>.
* science/ascent: Update 0.7.1-66 -> 0.8.0Yuri Victorovich2022-02-132-8/+7
| | | | Reported by: portscout
* science/conduit: Update 0.8.1 -> 0.8.2Yuri Victorovich2022-02-132-8/+9
| | | | Reported by: portscout
* science/jmol: Update 14.32.20 -> 14.32.21Yuri Victorovich2022-02-132-4/+4
| | | | Reported by: portscout
* science/phonopy: Update 2.11.0 -> 2.13.1Yuri Victorovich2022-02-132-5/+5
| | | | Reported by: portscout
* science/hypre: Update 2.23.0 -> 2.24.0Yuri Victorovich2022-02-132-4/+4
| | | | Reported by: portscout
* science/afni: update to 22.0.09Fernando Apesteguía2022-02-122-4/+4
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* science/afni: udpate to 22.0.07Fernando Apesteguía2022-02-112-4/+4
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* science/afni: update to 22.0.06Fernando Apesteguía2022-02-103-4/+5
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