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# ex:ts=8
# New ports collection makefile for: embassy
# Date created: 1.November.2004
# Whom: Fernan Aguero <fernan@iib.unsamn.edu.ar>
#
# $FreeBSD$
#
PORTNAME= embassy
PORTVERSION= 6.2.0
PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/
DIST_SUBDIR= emboss
MAINTAINER= fernan@iib.unsam.edu.ar
COMMENT= A collection of contributed EMBOSS applications
LIB_DEPENDS= nucleus.6:${PORTSDIR}/biology/emboss
PREFIX?= ${LOCALBASE}/emboss
NO_MTREE= yes
USE_SUBMAKE= yes
USE_ICONV= yes
USE_GMAKE= yes
GNU_CONFIGURE= yes
USE_XORG= x11
USE_MOTIF= yes
USE_LDCONFIG= yes
OPTIONS= DOMAINATRIX "Protein domain apps" on \
DOMALIGN "Protein domain apps" on \
DOMSEARCH "Protein domain apps" on \
SIGNATURE "Protein domain apps" on \
STRUCTURE "Protein domain apps" on \
EMNU "EMBOSS simple menu" on \
ESIM4 "Align cDNA/EST to genome" on \
HMMER "HMM alignment and searches" on \
MEMENEW "Motif detection" on \
MSE "A multiple sequence screen editor" on \
MYEMBOSS "Examples for developers of EMBOSS apps" on \
PHYLIPNEW "Phylogeny inference" on \
TOPO "Transmembrane display" on \
VIENNA "RNA folding" on \
MIRA "Whole Genome shotgun and EST assembler" on \
IPRSCAN "InterPro scan" on \
CBSTOOLS "CBS Tools" on
CPPFLAGS+= -I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include
LDFLAGS+= -L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib
CONFIGURE_ENV= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}"
EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY
DOMAINATRIX_VERSION= 0.1.0
EMNU_VERSION= 1.05
ESIM4_VERSION= 1.0.0
HMMER_VERSION= 2.3.2
MEMENEW_VERSION= 4.0.0
MSE_VERSION= 3.0.0
TOPO_VERSION= 2.0.0
PHYLIPNEW_VERSION= 3.69
DOMALIGN_VERSION= 0.1.0
DOMSEARCH_VERSION= 0.1.0
SIGNATURE_VERSION= 0.1.0
STRUCTURE_VERSION= 0.1.0
MYEMBOSS_VERSION= 6.2.0
VIENNA_VERSION= 1.7.2
MIRA_VERSION= 2.8.2
IPRSCAN_VERSION= 4.3.1
CBSTOOLS_VERSION= 1.0.0
EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEMENEW MSE PHYLIPNEW \
TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \
VIENNA MIRA IPRSCAN CBSTOOLS
.include <bsd.port.pre.mk>
.for app in ${EMBASSY_APPS}
.if !defined(WITHOUT_${app})
APPLIST+= ${app}
${app}_WRKSRC= ${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
DISTFILES+= ${${app}_DISTFILE}
PLIST_${app}= ""
.else
PLIST_${app}= "@comment "
.endif
PLIST_SUB+= PLIST_${app}=${PLIST_${app}}
.endfor
do-extract:
.for app in ${APPLIST}
@ ${MKDIR} ${EMBASSY_WRKDIR}
@ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \
${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
@ if [ `id -u` = 0 ]; then \
${CHMOD} -R ug-s ${${app}_WRKSRC}; \
${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
fi
.endfor
post-extract:
@${REINPLACE_CMD} -e 's#emboss_doc##g' ${EMBASSY_WRKDIR}/MIRA-2.8.2/Makefile.in
post-patch:
@${FIND} ${WRKSRC} -name configure | ${XARGS} ${REINPLACE_CMD} -e 's|echo aout|echo elf|'
do-configure:
.for app in ${APPLIST}
@ cd ${${app}_WRKSRC} && \
${SETENV} ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}
.endfor
do-build:
.for app in ${APPLIST}
@ cd ${${app}_WRKSRC} && \
${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS}
.endfor
do-install:
.for app in ${APPLIST}
@ cd ${${app}_WRKSRC} && \
${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
${MAKE_ARGS} ${INSTALL_TARGET}
.endfor
.include <bsd.port.post.mk>
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