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# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= jellyfish
PORTVERSION= 2.2.4
DISTVERSIONPREFIX= v
CATEGORIES= biology
MAINTAINER= bacon4000@gmail.com
COMMENT= Fast, memory-efficient counting of k-mers in DNA
LICENSE= GPLv3+
LICENSE_FILE= ${WRKSRC}/LICENSE
BUILD_DEPENDS= yaggo:${PORTSDIR}/devel/yaggo
GNU_CONFIGURE= yes
USES= autoreconf compiler:c++11-lib gmake \
libtool pkgconfig
USE_LDCONFIG= yes
USE_GITHUB= yes
GH_ACCOUNT= gmarcais
GH_PROJECT= Jellyfish
INSTALL_TARGET= install-strip
BROKEN_FreeBSD_9_i386= multiple code issues on i386 < 10.0-RELEASE
.include <bsd.port.pre.mk>
# SSE code assumes amd64 features
.if ${ARCH} != "amd64"
CONFIGURE_ARGS+=--without-sse
.endif
# configure does not support --with-pkgconfigdir
post-patch:
@${REINPLACE_CMD} \
-e 's|$$(libdir)/pkgconfig|${PREFIX}/libdata/pkgconfig|g' \
${WRKSRC}/Makefile.am
.include <bsd.port.post.mk>
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