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# Created by: Mauricio Herrera Cuadra <mauricio@arareko.net>
# $FreeBSD$
PORTNAME= bioperl-run
PORTVERSION= 1.6.901
CATEGORIES= biology perl5
PKGNAMEPREFIX= p5-
MAINTAINER= ports@FreeBSD.org
COMMENT= Wrapper modules for common bioinformatics tools
LICENSE= ART10 GPLv3
LICENSE_COMB= dual
BUILD_DEPENDS= p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl \
p5-IPC-Run>=0:${PORTSDIR}/devel/p5-IPC-Run \
p5-Algorithm-Diff>=0:${PORTSDIR}/devel/p5-Algorithm-Diff \
p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \
p5-File-Sort>=0:${PORTSDIR}/misc/p5-File-Sort \
p5-Config-Any>=0:${PORTSDIR}/devel/p5-Config-Any
RUN_DEPENDS:= ${BUILD_DEPENDS}
CONFLICTS= p5-bioperl-run-1.[13579]*
USES= perl5
USE_GITHUB= yes
GH_ACCOUNT= bioperl
GH_COMMIT= 96ccd93
GH_TAGNAME= ${GH_COMMIT}
USES= perl5 shebangfix
USE_PERL5= modbuild
SHEBANG_FILES= scripts/bioperl_application_installer.PLS \
scripts/multi_hmmsearch.PLS \
scripts/panalysis.PLS \
scripts/papplmaker.PLS \
scripts/run_neighbor.PLS \
scripts/run_protdist.PLS \
OPTIONS_DEFINE= DOCS
.include <bsd.port.options.mk>
post-build:
cd ${WRKSRC} && ${PERL} ./Build manifest
post-install:
.for i in bioperl_application_installer multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
${CP} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
.endfor
.if ${PORT_OPTIONS:MDOCS}
${MKDIR} ${STAGEDIR}${DOCSDIR}
.for doc in AUTHORS Changes INSTALL.PROGRAMS README
${INSTALL_DATA} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
.endfor
.endif
.include <bsd.port.mk>
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