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# New ports collection makefile for: phrap
# Date created: 21 June 2005
# Whom: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
#
# $FreeBSD$
#
PORTNAME= phrap
PORTVERSION= 0.990329
CATEGORIES= biology
MASTER_SITES= # put the tarball manually
DISTFILES= distrib.tar.Z
DIST_SUBDIR= ${PORTNAME}
MAINTAINER= mzaki@biol.s.u-tokyo.ac.jp
COMMENT= Phrap is a program for assembling shotgun DNA sequence data
RESTRICTED= Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
.if defined(PACKAGE_BUILDING)
IGNORE= distribution files must be obtained via the authors
.endif
NO_WRKSUBDIR= yes
MAKEFILE= makefile
ALL_TARGET= all manyreads
BINARIES= cluster cross_match cross_match.manyreads loco \
phrap phrap.longreads phrap.manyreads swat
SCRIPTS= phrapview
.for f in ${BINARIES} ${SCRIPTS}
PLIST_FILES+= bin/${f}
.endfor
PORTDATA= BLOSUM50 BLOSUM62 PAM250 mat50 mat70 penalty2 vector.seq
PORTDOCS= general.doc phrap.doc swat.doc
.include <bsd.port.pre.mk>
.for f in ${DISTFILES}
.if !exists(${DISTDIR}/${DIST_SUBDIR}/${f})
IGNORE= you must request the source code \(${DISTFILES}\) via e-mail, place it manually in ${DISTDIR}/${DIST_SUBDIR}, and then try it again
.endif
.endfor
do-install:
.for f in ${BINARIES}
@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/
@${CHMOD} a-r ${PREFIX}/bin/${f} # as required by the agreement
.endfor
.for f in ${SCRIPTS}
@${INSTALL_SCRIPT} ${WRKSRC}/${f} ${PREFIX}/bin/
.endfor
@${MKDIR} ${DATADIR}
.for f in ${PORTDATA}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
.endfor
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}
.endfor
.endif
.include <bsd.port.post.mk>
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