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PORTNAME= orange3-single-cell
DISTVERSION= 0.8.2
PORTREVISION= 3
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
COMMENT= Orange add-on for gene expression of single cell data
LICENSE= AGPLv3+
DEPRECATED= Uses EOL Python 2.7 via misc/orange3
EXPIRATION_DATE=2021-06-23
RUN_DEPENDS= orange3>0:misc/orange3 \
${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}astropy>0:astro/py-astropy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}fastdtw>0:math/py-fastdtw@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}joblib>=0.11:devel/py-joblib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}loompy>=2.0.10:biology/py-loompy@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}pandas>=0.23:math/py-pandas@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scikit-learn>0:science/py-scikit-learn@${PY_FLAVOR} \
${PYNUMPY}
# Supports 3.4+ but loompy 3.6+ only.
USES= python:3.7+
USE_GITHUB= yes
GH_ACCOUNT= biolab
USE_PYTHON= distutils autoplist
OPTIONS_DEFINE= DOCS
DOCS_BUILD_DEPENDS= gmake:devel/gmake \
${PYTHON_PKGNAMEPREFIX}sphinx>=0,1:textproc/py-sphinx@${PY_FLAVOR}
pre-build-DOCS-on:
@cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${GMAKE} html htmlhelp SPHINXBUILD=${LOCALBASE}/bin/sphinx-build-${PYTHON_VER}
pre-build-DOCS-off:
@${REINPLACE_CMD} "s|^ include_documentation| #include_documentation|" ${WRKSRC}/setup.py
.include <bsd.port.mk>
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