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# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
# $FreeBSD$
PORTNAME= ssaha
PORTVERSION= 3.1c
PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
MAINTAINER= ports@FreeBSD.org
COMMENT= Very fast matching and alignment of DNA sequences
NO_WRKSUBDIR= yes
BUILD_WRKSRC= ${WRKSRC}/Binary
USES= gmake
USE_GCC= any
MAKE_ENV= CCC="${CXX}" OPTIM="${CXXFLAGS}" THREAD_LIB="-pthread"
MAKEFILE= makefile
ALL_TARGET= ssaha
PLIST_FILES= bin/ssaha %%DATADIR%%/testSSAHA.csh \
${DATA_FILES:S,^,%%DATADIR%%/,}
PLIST_DIRS= %%DATADIR%%
DATA_FILES= test.fasta test_extract.fasta test_filter.fail \
test_filter.fastq test_protein.fasta README
do-install:
(cd ${BUILD_WRKSRC} && ${INSTALL_PROGRAM} ssaha \
${STAGEDIR}${PREFIX}/bin)
@${MKDIR} ${STAGEDIR}${DATADIR}
(cd ${BUILD_WRKSRC} && ${INSTALL_SCRIPT} testSSAHA.csh \
${STAGEDIR}${DATADIR})
.for i in ${DATA_FILES}
(cd ${BUILD_WRKSRC} && ${INSTALL_DATA} ${i} \
${STAGEDIR}${DATADIR})
.endfor
.include <bsd.port.mk>
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