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PORTNAME= ugene
PORTVERSION= 40.1
CATEGORIES= biology science
MAINTAINER= h2+fbsdports@fsfe.org
COMMENT= Integrated bioinformatics toolkit
WWW= https://ugene.net/
LICENSE= GPLv2+
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
BROKEN_aarch64= fails to build: invokes x86 asm
BROKEN_armv7= fails to build: src/SendReportDialog.cpp:435:20: error: invalid output constraint '=a' in asm, see https://github.com/ugeneunipro/ugene/issues/919
BROKEN_riscv64= fails to build: invokes x86 asm
RUN_DEPENDS= bash:shells/bash
USE_GITHUB= yes
GH_ACCOUNT= ugeneunipro
USES= desktop-file-utils gl qmake qt:5 shared-mime-info sqlite xorg
USE_GL= gl glu
USE_QT= buildtools_build linguisttools_build \
core gui network opengl printsupport scripttools script \
sql svg testlib widgets xml \
imageformats_run
USE_XORG= x11 xtst
QMAKE_ARGS= INSTALL_PREFIX="${PREFIX}" UGENE_INSTALL_DATA="${DATADIR}" \
INSTALL_MANDIR="${MAN1PREFIX}/man" \
UGENE_LRELEASE="${LRELEASE}" UGENE_LUPDATE="${LUPDATE}" \
UGENE_USE_BUNDLED_SQLITE=0
ALL_TARGET= release
CXXFLAGS_i386= -msse2
OPTIONS_DEFINE= OPENCL
OPENCL_QMAKE_ON= UGENE_OPENCL_DETECTED=1
.include <bsd.port.pre.mk>
.if ${ARCH} == i386
QMAKE_ARGS+= CONFIG+=x86
.endif
post-patch:
# yes, bash is required, stuff will not execute with sh
@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
${WRKSRC}/src/gen_bin_script.cmd \
${WRKSRC}/etc/shared/ugene ${WRKSRC}/etc/shared/ugened
@${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}/${ARCH}|' \
${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp
@${REINPLACE_CMD} 's, -lbreakpad$$$$D,,' \
${WRKSRC}/src/corelibs/U2Private/U2Private.pri \
${WRKSRC}/src/plugins_checker/plugins_checker.pri \
${WRKSRC}/src/ugenecl/ugenecl.pri \
${WRKSRC}/src/ugeneui/ugeneui.pri
@${REINPLACE_CMD} -e '/ugene\.desktop/s,share,&d,' \
${WRKSRC}/ugene.pri
post-stage:
@cd ${STAGEDIR}${PREFIX} && ${RM} bin/ecp.* lib/ugene/ecp.*
.include <bsd.port.post.mk>
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