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PORTNAME= unikmer
DISTVERSIONPREFIX= v
DISTVERSION= 0.19.1
PORTREVISION= 6
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
COMMENT= Toolkit for nucleic acid k-mer analysis, set operations on k-mers
WWW= https://github.com/shenwei356/unikmer
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
TEST_DEPENDS= csvtk:science/csvtk
USES= go:modules perl5
USE_GITHUB= nodefault
GH_TUPLE= golang:sys:v0.6.0:sys
USE_PERL5= test
GO_MODULE= github.com/shenwei356/unikmer
GO_TARGET= ./${PORTNAME}
PLIST_FILES= bin/${PORTNAME}
pre-patch:
${RM} -r ${WRKSRC}/vendor/golang.org/x/sys
${LN} -s ${WRKDIR}/sys-* ${WRKSRC}/vendor/golang.org/x/sys
do-test: # from the benchmark section in README
@cd ${WRKSRC} && \
${GO_CMD} test . -bench=Bench* -benchmem \
| ${GREP} Bench \
| ${PERL} -pe 's/\s\s+/\t/g' \
| csvtk cut -Ht -f 1,3-5 \
| csvtk add-header -t -n test,time,memory,allocs \
| csvtk pretty -t -r
.include <bsd.port.mk>
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