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| author | Robert Clausecker <fuz@FreeBSD.org> | 2023-05-24 07:09:35 +0000 |
|---|---|---|
| committer | Robert Clausecker <fuz@FreeBSD.org> | 2023-05-25 09:39:33 +0000 |
| commit | 41cce74a9e4c1727c4120517724059f68f27404f (patch) | |
| tree | 4b896801396e73d64fb4ba21ecfbb2297339e14b | |
| parent | 55b63657a7c57ad5ee8fe0766dcb1604f2237e24 (diff) | |
| download | ports-41cce74a9e4c1727c4120517724059f68f27404f.tar.gz ports-41cce74a9e4c1727c4120517724059f68f27404f.zip | |
biology/py-pysam: unbundle biology/htslib
This fixes the build on armv7 by picking up our custom fixed libhts
over the bundled unfixed version. The CFLAGS workaround is now no
longer required either.
Approved by: yuri (maintainer)
Differential Revision: https://reviews.freebsd.org/D40251
| -rw-r--r-- | biology/py-pysam/Makefile | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index 5cd1b27a49a0..10e1d55b786e 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,5 +1,6 @@ PORTNAME= pysam DISTVERSION= 0.20.0 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,12 +12,15 @@ WWW= https://github.com/pysam-developers/pysam LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING +LIB_DEPENDS= libhts.so:biology/htslib + USES= gmake python:3.6-3.9 USE_PYTHON= autoplist distutils cython cython_run pytest -CFLAGS+= -fPIC # workaround for https://github.com/pysam-developers/pysam/issues/1146 - BINARY_ALIAS= make=${GMAKE} +MAKE_ENV= HTSLIB_MODE=external \ + HTSLIB_LIBRARY_DIR=${LOCALBASE}/lib \ + HTSLIB_INCLUDE_DIR=${LOCALBASE}/include post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so |