science/jmol: Add JSmol (Java viewer for chemical structures in 3D) as a port option

PR:		246703
Submitted by:	thierry

3 files changed, 1766 insertions, 2 deletions

diff --git a/science/jmol/Makefile b/science/jmol/Makefile
index 79510561e0a5..6dab54bd4cb8 100644
--- a/science/jmol/Makefile
+++ b/science/jmol/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	Jmol
 DISTVERSION=	14.30.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science java
 MASTER_SITES=	SF/${PORTNAME:tl}/${PORTNAME}/Version%20${DISTVERSION:R}/${PORTNAME}%20${DISTVERSION}/
 DISTFILES=	${PORTNAME}-${DISTVERSION}-full${EXTRACT_SUFX}
@@ -30,7 +30,12 @@ JARS=		${PORTNAME}.jar ${PORTNAME}Data.jar ${PORTNAME}Lib.jar
 PLIST_FILES=	${EXES:S/^/bin\//} \
 		${JARS:S/^/${JAVAJARDIR}\//}
 
-OPTIONS_DEFINE=	DOCS
+OPTIONS_DEFINE=		DOCS JSMOL
+OPTIONS_DEFAULT=	JSMOL
+
+JSMOL_DESC=		Install JSmol
+JSMOL_BUILD_DEPENDS=	unzip>0:archivers/unzip
+JSMOL_VARS=		WWWDIR=${PREFIX}/www/JSmol PLIST=${.CURDIR}/pkg-plist-jsmol
 
 PORTDOCS=	*
 
@@ -39,6 +44,10 @@ DESKTOP_ENTRIES="${PORTNAME}" "" "" "${PORTNAME:tl}" "" false
 post-patch:
 	@${REINPLACE_CMD} 's|<input message="private property file.*||' ${WRKSRC}/build.xml
 
+post-build-JSMOL-on:
+	@${MKDIR} ${WRKDIR}${PREFIX}/www
+	@${UNZIP_CMD} -d ${WRKDIR}${PREFIX}/www ${WRKSRC}/jsmol.zip
+
 do-install:
 .for exe in ${EXES}
 	${INSTALL_SCRIPT} ${WRKDIR}/${exe} ${STAGEDIR}${PREFIX}/bin
@@ -47,6 +56,10 @@ do-install:
 	${INSTALL_DATA} ${WRKSRC}/build/${jar} ${STAGEDIR}${JAVAJARDIR}
 .endfor
 
+do-install-JSMOL-on:
+	${MKDIR} ${STAGEDIR}${WWWDIR}
+	${CP} -r ${WRKDIR}${PREFIX}/www/jsmol/* ${STAGEDIR}${WWWDIR}
+
 do-install-DOCS-on:
 	cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}
 
diff --git a/science/jmol/pkg-descr b/science/jmol/pkg-descr
index 07c9bebd35fc..83dc13c3d347 100644
--- a/science/jmol/pkg-descr
+++ b/science/jmol/pkg-descr
@@ -13,3 +13,4 @@ for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD
 programs for 3D printing (VRML export).
 
 WWW: https://sourceforge.net/projects/jmol/
+WWW: http://jsmol.sourceforge.net/
diff --git a/science/jmol/pkg-plist-jsmol b/science/jmol/pkg-plist-jsmol
new file mode 100644
index 000000000000..ac43f593f277
--- /dev/null
+++ b/science/jmol/pkg-plist-jsmol
@@ -0,0 +1,1750 @@
+%%WWWDIR%%/JSmol.GLmol.min.js
+%%WWWDIR%%/JSmol.lite.js
+%%WWWDIR%%/JSmol.lite.nojq.js
+%%WWWDIR%%/JSmol.min.js
+%%WWWDIR%%/JSmol.min.nojq.js
+%%WWWDIR%%/README-DOWNLOAD.TXT
+%%WWWDIR%%/README.TXT
+%%WWWDIR%%/anim.htm
+%%WWWDIR%%/cip.htm
+%%WWWDIR%%/cover.htm
+%%WWWDIR%%/coverJava.htm
+%%WWWDIR%%/data/04369a.cif
+%%WWWDIR%%/data/1bna_surface.pse
+%%WWWDIR%%/data/1cbs.cif
+%%WWWDIR%%/data/1cbs_2fofc.map
+%%WWWDIR%%/data/1crn.pdb
+%%WWWDIR%%/data/1crn.pdb.gz
+%%WWWDIR%%/data/1crn_surf.png
+%%WWWDIR%%/data/1crn_surf_map.png
+%%WWWDIR%%/data/1crntour.pdb
+%%WWWDIR%%/data/1ehz.pdb.dssr
+%%WWWDIR%%/data/1fss.png
+%%WWWDIR%%/data/1fss.pse
+%%WWWDIR%%/data/1hxw.png
+%%WWWDIR%%/data/1hxw.pngj
+%%WWWDIR%%/data/1m19.pdb.gz
+%%WWWDIR%%/data/2bxaH.pdb
+%%WWWDIR%%/data/3hz7.pdb.gz
+%%WWWDIR%%/data/AgFUPMOS.cif
+%%WWWDIR%%/data/Al2O3.png
+%%WWWDIR%%/data/Crspectra.jdx
+%%WWWDIR%%/data/CuO2CCHF2.magres
+%%WWWDIR%%/data/Sr2Nb2O7_working.gif
+%%WWWDIR%%/data/Sr2Nb2O7_working.png
+%%WWWDIR%%/data/Sr2Nb2O7_working2.gif
+%%WWWDIR%%/data/Sr2Nb2O7_working2.png
+%%WWWDIR%%/data/Ti2O3.cif
+%%WWWDIR%%/data/aceticacid.spartan
+%%WWWDIR%%/data/acetophenone.jdx
+%%WWWDIR%%/data/aquation20.jdx
+%%WWWDIR%%/data/astex.cmds.txt
+%%WWWDIR%%/data/bbPlane.pse
+%%WWWDIR%%/data/benzene.c3xml
+%%WWWDIR%%/data/benzenevib.spardir/Document
+%%WWWDIR%%/data/benzenevib.spardir/M0001/Calculations
+%%WWWDIR%%/data/benzenevib.spardir/M0001/Commands
+%%WWWDIR%%/data/benzenevib.spardir/M0001/Geometry
+%%WWWDIR%%/data/benzenevib.spardir/M0001/Molecule
+%%WWWDIR%%/data/benzenevib.spardir/M0001/_spartan
+%%WWWDIR%%/data/benzenevib.spardir/M0001/archive
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+%%WWWDIR%%/data/benzenevib.spardir/M0001/proparc
+%%WWWDIR%%/data/benzenevib.spardir/M0001/ret_code
+%%WWWDIR%%/data/benzenevib.spardir/M0001/voutput
+%%WWWDIR%%/data/benzenevib.spardir/SpreadSheet/SheetData
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+%%WWWDIR%%/data/benzenevib.spardir/_spartandir
+%%WWWDIR%%/data/benzenevib.spardir/output
+%%WWWDIR%%/data/benzenevib.spardir/sheet
+%%WWWDIR%%/data/bob.png
+%%WWWDIR%%/data/bonattite.png
+%%WWWDIR%%/data/bonattite_model.png
+%%WWWDIR%%/data/browse.png
+%%WWWDIR%%/data/buckyball.mol
+%%WWWDIR%%/data/buckyball2D.mol
+%%WWWDIR%%/data/c13nmr_assigned.jdx
+%%WWWDIR%%/data/c60af.mol
+%%WWWDIR%%/data/c6h6.smol
+%%WWWDIR%%/data/caffeine.jvxl
+%%WWWDIR%%/data/caffeine.mol
+%%WWWDIR%%/data/caffeine.vdw.jvxl
+%%WWWDIR%%/data/calcite.cif
+%%WWWDIR%%/data/ch3cl.smol
+%%WWWDIR%%/data/chairflip.png
+%%WWWDIR%%/data/chalcanthite.png
+%%WWWDIR%%/data/chalcanthite_model.png
+%%WWWDIR%%/data/cl2o.gamess
+%%WWWDIR%%/data/co2.smol
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+%%WWWDIR%%/data/cx1.jdx
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+%%WWWDIR%%/data/flexfit.spt
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+%%WWWDIR%%/data/k04041.cif
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+%%WWWDIR%%/data/methanol.spartan.bin
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+%%WWWDIR%%/data/n-butane_M0001.jxyz
+%%WWWDIR%%/data/n.mol
+%%WWWDIR%%/data/nacl.cif
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+%%WWWDIR%%/flot/TODO
+%%WWWDIR%%/flot/jmol-flot.png
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