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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2023-02-24 23:23:25 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2023-02-24 23:23:25 +0000 |
| commit | 5ce41514802cd442c01388c30a97e1fde16d836f (patch) | |
| tree | 306de5ef063323a2d70300b28b7357926676819e | |
| parent | f9e56d1b6e1952f49adda0e800c7410b6b466dbc (diff) | |
| download | ports-5ce41514802cd442c01388c30a97e1fde16d836f.tar.gz ports-5ce41514802cd442c01388c30a97e1fde16d836f.zip | |
biology/htslib: Update to 1.17
Numerous enhancements and fixes
Changes: https://github.com/samtools/htslib/releases
Reported by: portscout
| -rw-r--r-- | biology/htslib/Makefile | 2 | ||||
| -rw-r--r-- | biology/htslib/distinfo | 6 | ||||
| -rw-r--r-- | biology/htslib/files/patch-Makefile | 37 |
3 files changed, 13 insertions, 32 deletions
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 383f90e08114..9f85da45917a 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -1,5 +1,5 @@ PORTNAME= htslib -DISTVERSION= 1.16 +DISTVERSION= 1.17 CATEGORIES= biology devel # Github generated distfiles are incomplete, so use custom tarball MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 88b848aeb2fb..24c398cacc3c 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1672094487 -SHA256 (htslib-1.16.tar.bz2) = 606b7c7aff73734cf033ecd156f40529fa5792f54524952a28938ca0890d7924 -SIZE (htslib-1.16.tar.bz2) = 4466776 +TIMESTAMP = 1677245487 +SHA256 (htslib-1.17.tar.bz2) = 763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f +SIZE (htslib-1.17.tar.bz2) = 4619884 diff --git a/biology/htslib/files/patch-Makefile b/biology/htslib/files/patch-Makefile index 7f91465d2ccd..eb6fb7f85901 100644 --- a/biology/htslib/files/patch-Makefile +++ b/biology/htslib/files/patch-Makefile @@ -1,33 +1,14 @@ ---- Makefile.orig 2021-03-20 15:53:14 UTC +--- Makefile.orig 2023-02-24 13:35:28 UTC +++ Makefile -@@ -53,13 +53,14 @@ man5dir = $(mandir)/man5 - man7dir = $(mandir)/man7 - pkgconfigdir= $(prefix)/libdata/pkgconfig - --MKDIR_P = mkdir -p --INSTALL = install -p --INSTALL_DATA = $(INSTALL) -m 644 --INSTALL_DIR = $(MKDIR_P) -m 755 --INSTALL_LIB = $(INSTALL_DATA) --INSTALL_MAN = $(INSTALL_DATA) +@@ -60,9 +60,9 @@ INSTALL = install -p + INSTALL_DATA = $(INSTALL) -m 644 + INSTALL_DIR = $(MKDIR_P) -m 755 + LIB_PERM = 644 +-INSTALL_LIB = $(INSTALL) -m $(LIB_PERM) ++INSTALL_LIB = $(BSD_INSTALL_LIB) + INSTALL_MAN = $(INSTALL_DATA) -INSTALL_PROGRAM = $(INSTALL) -+# Use ports BSD_INSTALL_PROGRAM to strip if WITH_DEBUG is not set -+MKDIR_P = mkdir -p -+INSTALL = install -p -+INSTALL_DATA = ${BSD_INSTALL_DATA} -+INSTALL_DIR = $(MKDIR_P) -+INSTALL_LIB = ${BSD_INSTALL_LIB} -+INSTALL_MAN = ${BSD_INSTALL_MAN} -+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM} ++INSTALL_PROGRAM = $(BSD_INSTALL_PROGRAM) # Set by config.mk if plugins are enabled plugindir = -@@ -102,7 +103,7 @@ BUILT_THRASH_PROGRAMS = \ - test/thrash_threads6 \ - test/thrash_threads7 - --all: lib-static lib-shared $(BUILT_PROGRAMS) plugins $(BUILT_TEST_PROGRAMS) \ -+all: lib-static lib-shared $(BUILT_PROGRAMS) plugins \ - htslib_static.mk htslib-uninstalled.pc - - ALL_CPPFLAGS = -I. $(CPPFLAGS) |