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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2024-01-05 09:32:05 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2024-01-05 09:38:14 +0000 |
| commit | 883c0d3b620714610b65cab9f81abcc6c60b9f36 (patch) | |
| tree | 401d9f77a6d17265863a6f7df4f72f18e3660d9e | |
| parent | d3a762b09a3002c33f98332d3218a7d379412e14 (diff) | |
| download | ports-883c0d3b620714610b65cab9f81abcc6c60b9f36.tar.gz ports-883c0d3b620714610b65cab9f81abcc6c60b9f36.zip | |
biology/ncbi-cxx-toolkit: update 27.0.0 → 28.0.0
3 files changed, 6 insertions, 17 deletions
diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 252a5ea5a484..524c59417088 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,7 +1,6 @@ PORTNAME= ncbi-cxx-toolkit DISTVERSIONPREFIX= release- -DISTVERSION= 27.0.0 -PORTREVISION= 1 +DISTVERSION= 28.0.0 CATEGORIES= biology science devel MAINTAINER= yuri@FreeBSD.org @@ -13,7 +12,8 @@ LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE BROKEN_armv6= platform not defined for FreeBSD arm, see https://github.com/ncbi/ncbi-cxx-toolkit-public/issues/2 -LIB_DEPENDS= libcdd.so:math/cddlib \ +LIB_DEPENDS= libbz2.so:archivers/bzip2 \ + libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre \ libunwind.so:devel/libunwind \ diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 61f897e153de..d43fffbfce8d 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1687817071 -SHA256 (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = c8fb3f99c6fce4f170b381f3a7789c76a2ff1c23c094c9852e2e3de1fdc57277 -SIZE (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = 57187775 +TIMESTAMP = 1704429509 +SHA256 (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = f0300db41849bbaf690c1dfb9080f3e441fc617a004283acfb2b7b25b32ff885 +SIZE (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = 57007980 diff --git a/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app b/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app deleted file mode 100644 index 8781ac4b7d09..000000000000 --- a/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app +++ /dev/null @@ -1,11 +0,0 @@ ---- src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app.orig 2023-06-26 23:22:57 UTC -+++ src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app -@@ -2,7 +2,7 @@ - - APP = pubmed_citmatch - SRC = pubmed_citmatch --LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch $(SEQ_LIBS) \ -+LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch seqset $(SEQ_LIBS) \ - pubmed medlars pub medline biblio general xser xconnect xutil xncbi - - LIBS = $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS) |