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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2020-01-13 04:06:14 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2020-01-13 04:06:14 +0000 |
| commit | b9c91f23ea0896fdb9120ab02774239690152f03 (patch) | |
| tree | 9e99a33701c1d5363a0d61f49f270c7436506990 | |
| parent | 3057377081098038338c54e3b17e26b8202be597 (diff) | |
| download | ports-b9c91f23ea0896fdb9120ab02774239690152f03.tar.gz ports-b9c91f23ea0896fdb9120ab02774239690152f03.zip | |
biology/abyss: Update 2.1.5 -> 2.2.3
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=522851
| -rw-r--r-- | biology/abyss/Makefile | 13 | ||||
| -rw-r--r-- | biology/abyss/distinfo | 8 | ||||
| -rw-r--r-- | biology/abyss/pkg-plist | 1 |
3 files changed, 8 insertions, 14 deletions
diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile index 3993ac1d062d..6a09c0dbc74c 100644 --- a/biology/abyss/Makefile +++ b/biology/abyss/Makefile @@ -1,13 +1,8 @@ # $FreeBSD$ PORTNAME= abyss -DISTVERSION= 2.1.5 -PORTREVISION= 6 +DISTVERSION= 2.2.3 CATEGORIES= biology -MASTER_SITES= http://www.bcgsc.ca/platform/bioinfo/software/${PORTNAME}/releases/${DISTVERSION}/ - -PATCH_SITES= https://github.com/bcgsc/${PORTNAME}/commit/ -PATCHFILES= 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5.patch:-p1 MAINTAINER= yuri@FreeBSD.org COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler @@ -24,11 +19,13 @@ LIB_DEPENDS= libffi.so:devel/libffi \ RUN_DEPENDS= bash:shells/bash \ gmake:devel/gmake -USES= compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite -SHEBANG_FILES= bin/${PORTNAME}-* +USES= autoreconf compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite +SHEBANG_FILES= bin/${PORTNAME}-* DataBase/abyss-db-txt SHEBANG_LANG= make make_OLD_CMD= /usr/bin/make make_CMD= ${PREFIX}/bin/gmake +USE_GITHUB= yes +GH_ACCOUNT= bcgsc GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo index 41338e6eb31f..3b41f00e1afc 100644 --- a/biology/abyss/distinfo +++ b/biology/abyss/distinfo @@ -1,5 +1,3 @@ -TIMESTAMP = 1561103807 -SHA256 (abyss-2.1.5.tar.gz) = 65bfc8241e6ff5adf7601ae4ae93a75e3db86d6bff5d593c75aaff7f0ef41757 -SIZE (abyss-2.1.5.tar.gz) = 1201318 -SHA256 (25eb9d2a914fb211fdfe04fcda5593f29fd23ff5.patch) = 93ad66c42610c4fba8cfbe256a2ab689bf4a76974c3b97a9e1094863614ad934 -SIZE (25eb9d2a914fb211fdfe04fcda5593f29fd23ff5.patch) = 1701 +TIMESTAMP = 1578886491 +SHA256 (bcgsc-abyss-2.2.3_GH0.tar.gz) = c7b93290b2ccffcf2f3ca42262621c636108f6dbc21f5684ebeeb4f682200675 +SIZE (bcgsc-abyss-2.2.3_GH0.tar.gz) = 1203318 diff --git a/biology/abyss/pkg-plist b/biology/abyss/pkg-plist index 94ec1d8d98df..9d33e624fff7 100644 --- a/biology/abyss/pkg-plist +++ b/biology/abyss/pkg-plist @@ -45,7 +45,6 @@ bin/abyss-overlap bin/abyss-paired-dbg bin/abyss-pe bin/abyss-samtoafg -bin/abyss-samtobreak bin/abyss-scaffold bin/abyss-sealer bin/abyss-stack-size |