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authorYasuhiro Kimura <yasu@FreeBSD.org>2024-03-22 07:25:44 +0000
committerYasuhiro Kimura <yasu@FreeBSD.org>2024-03-22 07:29:47 +0000
commiteb44cf3c6f2638afa81b13177c442ae96f58f236 (patch)
tree2b87fb780ecec467a9fc8c74bceb5fd678e3e488
parent73265dd40101352fc8d0d14b8081f41f7c3bd281 (diff)
downloadports-eb44cf3c6f2638afa81b13177c442ae96f58f236.tar.gz
ports-eb44cf3c6f2638afa81b13177c442ae96f58f236.zip
biology/minimap2: Move man page to share/man
Approved by: portmgr (blanket)
-rw-r--r--biology/minimap2/Makefile1
-rw-r--r--biology/minimap2/files/patch-Makefile.simde6
-rw-r--r--biology/minimap2/pkg-plist2
3 files changed, 5 insertions, 4 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile
index d403413cc324..df9552ac6ca0 100644
--- a/biology/minimap2/Makefile
+++ b/biology/minimap2/Makefile
@@ -1,6 +1,7 @@
PORTNAME= minimap2
DISTVERSIONPREFIX= v
DISTVERSION= 2.27
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/minimap2/files/patch-Makefile.simde b/biology/minimap2/files/patch-Makefile.simde
index 5d5e0ccf482c..aac7981c6b10 100644
--- a/biology/minimap2/files/patch-Makefile.simde
+++ b/biology/minimap2/files/patch-Makefile.simde
@@ -1,4 +1,4 @@
---- Makefile.simde.orig 2021-11-18 22:11:48 UTC
+--- Makefile.simde.orig 2024-03-12 17:20:07 UTC
+++ Makefile.simde
@@ -1,13 +1,26 @@
-CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra
@@ -21,7 +21,7 @@
LIBS= -lm -lz -lpthread
+PREFIX?= /usr/local
-+MAN1DIR?= ${PREFIX}/man/man1
++MAN1DIR?= ${PREFIX}/share/man/man1
+DATADIR?= ${PREFIX}/share/minimap2
+MKDIR?= mkdir
@@ -32,7 +32,7 @@
ifneq ($(arm_neon),) # if arm_neon is defined
ifeq ($(aarch64),) #if aarch64 is not defined
CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
-@@ -26,7 +39,7 @@ ifneq ($(tsan),)
+@@ -26,7 +39,7 @@ endif
LIBS+=-fsanitize=thread
endif
diff --git a/biology/minimap2/pkg-plist b/biology/minimap2/pkg-plist
index 1d11d4c99c2f..742d1eb1b3f7 100644
--- a/biology/minimap2/pkg-plist
+++ b/biology/minimap2/pkg-plist
@@ -1,7 +1,7 @@
bin/minimap2
bin/minimap2-lite
bin/sdust
-man/man1/minimap2.1.gz
+share/man/man1/minimap2.1.gz
%%DATADIR%%/test/MT-human.fa
%%DATADIR%%/test/MT-orang.fa
%%DATADIR%%/test/q-inv.fa