New port: astro/oskar: SKA Radio telescope simulator

9 files changed, 725 insertions, 0 deletions

diff --git a/astro/Makefile b/astro/Makefile
index 311f9e61c1f9..d328fa874c52 100644
--- a/astro/Makefile
+++ b/astro/Makefile
@@ -48,6 +48,7 @@
     SUBDIR += nightfall
     SUBDIR += opencpn
     SUBDIR += openuniverse
+    SUBDIR += oskar
     SUBDIR += osmosis
     SUBDIR += p5-Astro
     SUBDIR += p5-Astro-ADS
diff --git a/astro/oskar/Makefile b/astro/oskar/Makefile
new file mode 100644
index 000000000000..a111a43cf528
--- /dev/null
+++ b/astro/oskar/Makefile
@@ -0,0 +1,24 @@
+# $FreeBSD$
+
+PORTNAME=	OSKAR
+DISTVERSION=	2.7.0
+CATEGORIES=	astro
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	SKA Radio telescope simulator
+
+LICENSE=	GPLv2
+xLICENSE_FILES=	${WRKSRC}/../COPYING
+
+LIB_DEPENDS=	libcfitsio.so:astro/cfitsio
+
+USES=		cmake:outsource localbase:ldflags python qt:5 shebangfix
+SHEBANG_FILES=	apps/oskar_convert_cst_to_scalar.py
+USE_GITHUB=	yes
+GH_ACCOUNT=	OxfordSKA
+USE_QT=		core gui network widgets buildtools_build qmake_build
+USE_LDCONFIG=	yes
+
+CMAKE_ARGS=	-DFREEBSD_FILESDIR:STRING=${FILESDIR}
+
+.include <bsd.port.mk>
diff --git a/astro/oskar/distinfo b/astro/oskar/distinfo
new file mode 100644
index 000000000000..b8ccf57aa840
--- /dev/null
+++ b/astro/oskar/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1532320268
+SHA256 (OxfordSKA-OSKAR-2.7.0_GH0.tar.gz) = 91bf49437bbfaae2e7e846799a32db990de0b569fbe185446ac0e9a2b54c84c7
+SIZE (OxfordSKA-OSKAR-2.7.0_GH0.tar.gz) = 4523221
diff --git a/astro/oskar/files/fcvt.h b/astro/oskar/files/fcvt.h
new file mode 100644
index 000000000000..d7a1e8a58ef1
--- /dev/null
+++ b/astro/oskar/files/fcvt.h
@@ -0,0 +1,125 @@
+//
+// fcvt.c
+//
+// Floating point to string conversion routines
+//
+// Copyright (C) 2002 Michael Ringgaard. All rights reserved.
+//
+// Redistribution and use in source and binary forms, with or without
+// modification, are permitted provided that the following conditions
+// are met:
+// 
+// 1. Redistributions of source code must retain the above copyright 
+//    notice, this list of conditions and the following disclaimer.  
+// 2. Redistributions in binary form must reproduce the above copyright
+//    notice, this list of conditions and the following disclaimer in the
+//    documentation and/or other materials provided with the distribution.  
+// 3. Neither the name of the project nor the names of its contributors
+//    may be used to endorse or promote products derived from this software
+//    without specific prior written permission. 
+// 
+// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+// ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+// ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
+// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+// OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+// HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF 
+// SUCH DAMAGE.
+// 
+
+#include <math.h>
+#define CVTBUFSIZE 64
+
+//
+// cvt.c - IEEE floating point formatting routines for FreeBSD
+// from GNU libc-4.6.27
+//
+
+static char *cvt(double arg, int ndigits, int *decpt, int *sign, char *buf, int eflag) {
+  int r2;
+  double fi, fj;
+  char *p, *p1;
+
+  if (ndigits < 0) ndigits = 0;
+  if (ndigits >= CVTBUFSIZE - 1) ndigits = CVTBUFSIZE - 2;
+  r2 = 0;
+  *sign = 0;
+  p = &buf[0];
+  if (arg < 0) {
+    *sign = 1;
+    arg = -arg;
+  }
+  arg = modf(arg, &fi);
+  p1 = &buf[CVTBUFSIZE];
+
+  if (fi != 0) {
+    p1 = &buf[CVTBUFSIZE];
+    while (fi != 0) {
+      fj = modf(fi / 10, &fi);
+      *--p1 = (int)((fj + .03) * 10) + '0';
+      r2++;
+    }
+    while (p1 < &buf[CVTBUFSIZE]) *p++ = *p1++;
+  } else if (arg > 0) {
+    while ((fj = arg * 10) < 1) {
+      arg = fj;
+      r2--;
+    }
+  }
+  p1 = &buf[ndigits];
+  if (eflag == 0) p1 += r2;
+  *decpt = r2;
+  if (p1 < &buf[0]) {
+    buf[0] = '\0';
+    return buf;
+  }
+  while (p <= p1 && p < &buf[CVTBUFSIZE]) {
+    arg *= 10;
+    arg = modf(arg, &fj);
+    *p++ = (int) fj + '0';
+  }
+  if (p1 >= &buf[CVTBUFSIZE]) {
+    buf[CVTBUFSIZE - 1] = '\0';
+    return buf;
+  }
+  p = p1;
+  *p1 += 5;
+  while (*p1 > '9') {
+    *p1 = '0';
+    if (p1 > buf) {
+      ++*--p1;
+    } else {
+      *p1 = '1';
+      (*decpt)++;
+      if (eflag == 0) {
+        if (p > buf) *p = '0';
+        p++;
+      }
+    }
+  }
+  *p = '\0';
+  return buf;
+}
+
+inline char *ecvt(double arg, int ndigits, int *decpt, int *sign) {
+  char cvtbuf[CVTBUFSIZE];
+  return cvt(arg, ndigits, decpt, sign, cvtbuf, 1);
+}
+
+inline char *ecvtbuf(double arg, int ndigits, int *decpt, int *sign, char *buf) {
+  return cvt(arg, ndigits, decpt, sign, buf, 1);
+}
+
+inline char *fcvt(double arg, int ndigits, int *decpt, int *sign) {
+  char cvtbuf[CVTBUFSIZE];
+  return cvt(arg, ndigits, decpt, sign, cvtbuf, 0);
+}
+
+inline char *fcvtbuf(double arg, int ndigits, int *decpt, int *sign, char *buf) {
+  return cvt(arg, ndigits, decpt, sign, buf, 0);
+}
+
diff --git a/astro/oskar/files/patch-CMakeLists.txt b/astro/oskar/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..006ac48aed1e
--- /dev/null
+++ b/astro/oskar/files/patch-CMakeLists.txt
@@ -0,0 +1,10 @@
+--- CMakeLists.txt.orig	2018-07-23 04:35:44 UTC
++++ CMakeLists.txt
+@@ -54,6 +54,7 @@ include_directories(
+     ${PROJECT_SOURCE_DIR}/extern/cfitsio-3.41
+     ${PROJECT_SOURCE_DIR}/extern/Random123
+     ${PROJECT_SOURCE_DIR}/extern/Random123/features
++    ${FREEBSD_FILESDIR}
+ )
+ set(GTEST_INCLUDE_DIR ${PROJECT_SOURCE_DIR}/extern/gtest-1.7.0/include/gtest)
+ 
diff --git a/astro/oskar/files/patch-extern_CMakeLists.txt b/astro/oskar/files/patch-extern_CMakeLists.txt
new file mode 100644
index 000000000000..9639c6f9153c
--- /dev/null
+++ b/astro/oskar/files/patch-extern_CMakeLists.txt
@@ -0,0 +1,8 @@
+--- extern/CMakeLists.txt.orig	2018-07-23 04:41:52 UTC
++++ extern/CMakeLists.txt
+@@ -1,4 +1,4 @@
+ # src/extern/CMakeLists.txt
+ 
+ add_subdirectory(gtest-1.7.0)
+-add_subdirectory(cfitsio-3.41)
++#add_subdirectory(cfitsio-3.41)
diff --git a/astro/oskar/files/patch-oskar_settings_src_oskar__settings__utility__string.cpp b/astro/oskar/files/patch-oskar_settings_src_oskar__settings__utility__string.cpp
new file mode 100644
index 000000000000..cb0f816c0f70
--- /dev/null
+++ b/astro/oskar/files/patch-oskar_settings_src_oskar__settings__utility__string.cpp
@@ -0,0 +1,10 @@
+--- oskar/settings/src/oskar_settings_utility_string.cpp.orig	2018-07-23 04:34:42 UTC
++++ oskar/settings/src/oskar_settings_utility_string.cpp
+@@ -39,6 +39,7 @@
+ #include <cmath>
+ #include <cstdarg>
+ #include <string>
++#include "fcvt.h"
+ 
+ std::string oskar_settings_utility_string_reduce(const std::string& str,
+                                                  const std::string& fill,
diff --git a/astro/oskar/pkg-descr b/astro/oskar/pkg-descr
new file mode 100644
index 000000000000..78810613f4ff
--- /dev/null
+++ b/astro/oskar/pkg-descr
@@ -0,0 +1,5 @@
+OSKAR has been designed to produce simulated visibility data from radio
+telescopes containing aperture arrays, such as those envisaged for the
+Square Kilometre Array.
+
+WWW: https://github.com/OxfordSKA/OSKAR
diff --git a/astro/oskar/pkg-plist b/astro/oskar/pkg-plist
new file mode 100644
index 000000000000..2e5478788ba8
--- /dev/null
+++ b/astro/oskar/pkg-plist
@@ -0,0 +1,539 @@
+bin/oskar
+bin/oskar_binary_file_query
+bin/oskar_convert_cst_to_scalar.py
+bin/oskar_convert_ecef_to_enu
+bin/oskar_convert_geodetic_to_ecef
+bin/oskar_filter_sky_model_clusters
+bin/oskar_fit_element_data
+bin/oskar_fits_image_to_sky_model
+bin/oskar_imager
+bin/oskar_sim_beam_pattern
+bin/oskar_sim_interferometer
+bin/oskar_vis_add
+bin/oskar_vis_add_noise
+bin/oskar_vis_summary
+bin/oskar_vis_to_ascii_table
+bin/oskar_vis_to_ms
+bin/oskar_vis_upgrade_format
+include/oskar/apps/oskar_app_registrar.h
+include/oskar/apps/oskar_app_settings.h
+include/oskar/apps/oskar_apps.h
+include/oskar/apps/oskar_settings_log.h
+include/oskar/apps/oskar_settings_to_beam_pattern.h
+include/oskar/apps/oskar_settings_to_imager.h
+include/oskar/apps/oskar_settings_to_interferometer.h
+include/oskar/apps/oskar_settings_to_sky.h
+include/oskar/apps/oskar_settings_to_telescope.h
+include/oskar/apps/oskar_sim_tec_screen.h
+include/oskar/beam_pattern/oskar_beam_pattern.h
+include/oskar/beam_pattern/oskar_beam_pattern_accessors.h
+include/oskar/beam_pattern/oskar_beam_pattern_check_init.h
+include/oskar/beam_pattern/oskar_beam_pattern_create.h
+include/oskar/beam_pattern/oskar_beam_pattern_free.h
+include/oskar/beam_pattern/oskar_beam_pattern_reset_cache.h
+include/oskar/beam_pattern/oskar_beam_pattern_run.h
+include/oskar/binary/oskar_binary.h
+include/oskar/binary/oskar_binary_create.h
+include/oskar/binary/oskar_binary_data_types.h
+include/oskar/binary/oskar_binary_free.h
+include/oskar/binary/oskar_binary_macros.h
+include/oskar/binary/oskar_binary_query.h
+include/oskar/binary/oskar_binary_read.h
+include/oskar/binary/oskar_binary_write.h
+include/oskar/binary/oskar_crc.h
+include/oskar/binary/oskar_endian.h
+include/oskar/convert/oskar_convert_apparent_ha_dec_to_enu_directions.h
+include/oskar/convert/oskar_convert_apparent_ra_dec_to_az_el.h
+include/oskar/convert/oskar_convert_apparent_ra_dec_to_enu_directions.h
+include/oskar/convert/oskar_convert_brightness_to_jy.h
+include/oskar/convert/oskar_convert_cellsize_to_fov.h
+include/oskar/convert/oskar_convert_cirs_ra_dec_to_enu_directions.h
+include/oskar/convert/oskar_convert_cirs_relative_directions_to_enu_directions.h
+include/oskar/convert/oskar_convert_cirs_relative_directions_to_enu_directions_cuda.h
+include/oskar/convert/oskar_convert_date_time_to_mjd.h
+include/oskar/convert/oskar_convert_ecef_to_baseline_uvw.h
+include/oskar/convert/oskar_convert_ecef_to_enu.h
+include/oskar/convert/oskar_convert_ecef_to_geodetic_spherical.h
+include/oskar/convert/oskar_convert_ecef_to_station_uvw.h
+include/oskar/convert/oskar_convert_ecef_to_station_uvw_cuda.h
+include/oskar/convert/oskar_convert_enu_directions_to_az_el.h
+include/oskar/convert/oskar_convert_enu_directions_to_cirs_relative_directions.h
+include/oskar/convert/oskar_convert_enu_directions_to_cirs_relative_directions_cuda.h
+include/oskar/convert/oskar_convert_enu_directions_to_relative_directions.h
+include/oskar/convert/oskar_convert_enu_directions_to_relative_directions_cuda.h
+include/oskar/convert/oskar_convert_enu_directions_to_relative_directions_inline.h
+include/oskar/convert/oskar_convert_enu_directions_to_theta_phi.h
+include/oskar/convert/oskar_convert_enu_directions_to_theta_phi_cuda.h
+include/oskar/convert/oskar_convert_enu_to_ecef.h
+include/oskar/convert/oskar_convert_enu_to_offset_ecef.h
+include/oskar/convert/oskar_convert_fov_to_cellsize.h
+include/oskar/convert/oskar_convert_galactic_to_fk5.h
+include/oskar/convert/oskar_convert_geodetic_spherical_to_ecef.h
+include/oskar/convert/oskar_convert_healpix_ring_to_theta_phi.h
+include/oskar/convert/oskar_convert_lon_lat_to_relative_directions.h
+include/oskar/convert/oskar_convert_lon_lat_to_relative_directions_cuda.h
+include/oskar/convert/oskar_convert_lon_lat_to_xyz.h
+include/oskar/convert/oskar_convert_ludwig3_to_theta_phi_components.h
+include/oskar/convert/oskar_convert_ludwig3_to_theta_phi_components_cuda.h
+include/oskar/convert/oskar_convert_mjd_to_gast_fast.h
+include/oskar/convert/oskar_convert_mjd_to_gmst.h
+include/oskar/convert/oskar_convert_mjd_ut1_to_era.h
+include/oskar/convert/oskar_convert_mjd_utc_to_mjd_tt.h
+include/oskar/convert/oskar_convert_offset_ecef_to_ecef.h
+include/oskar/convert/oskar_convert_relative_directions_to_enu_directions.h
+include/oskar/convert/oskar_convert_relative_directions_to_enu_directions_cuda.h
+include/oskar/convert/oskar_convert_relative_directions_to_enu_directions_inline.h
+include/oskar/convert/oskar_convert_relative_directions_to_lon_lat.h
+include/oskar/convert/oskar_convert_station_uvw_to_baseline_uvw.h
+include/oskar/convert/oskar_convert_station_uvw_to_baseline_uvw_cuda.h
+include/oskar/convert/oskar_convert_theta_phi_to_enu_directions.h
+include/oskar/convert/oskar_convert_theta_phi_to_healpix_ring.h
+include/oskar/convert/oskar_convert_xyz_to_lon_lat.h
+include/oskar/convert/oskar_equation_of_equinoxes_fast.h
+include/oskar/convert/oskar_evaluate_diurnal_aberration.h
+include/oskar/correlate/oskar_auto_correlate.h
+include/oskar/correlate/oskar_auto_correlate_cuda.h
+include/oskar/correlate/oskar_auto_correlate_omp.h
+include/oskar/correlate/oskar_auto_correlate_scalar_cuda.h
+include/oskar/correlate/oskar_auto_correlate_scalar_omp.h
+include/oskar/correlate/oskar_cross_correlate.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_cuda.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_omp.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_scalar_cuda.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_scalar_omp.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_time_smearing_cuda.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_time_smearing_omp.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_time_smearing_scalar_cuda.h
+include/oskar/correlate/oskar_cross_correlate_gaussian_time_smearing_scalar_omp.h
+include/oskar/correlate/oskar_cross_correlate_point_cuda.h
+include/oskar/correlate/oskar_cross_correlate_point_omp.h
+include/oskar/correlate/oskar_cross_correlate_point_scalar_cuda.h
+include/oskar/correlate/oskar_cross_correlate_point_scalar_omp.h
+include/oskar/correlate/oskar_cross_correlate_point_time_smearing_cuda.h
+include/oskar/correlate/oskar_cross_correlate_point_time_smearing_omp.h
+include/oskar/correlate/oskar_cross_correlate_point_time_smearing_scalar_cuda.h
+include/oskar/correlate/oskar_cross_correlate_point_time_smearing_scalar_omp.h
+include/oskar/correlate/oskar_evaluate_auto_power.h
+include/oskar/correlate/oskar_evaluate_auto_power_c.h
+include/oskar/correlate/oskar_evaluate_auto_power_cuda.h
+include/oskar/correlate/oskar_evaluate_cross_power.h
+include/oskar/correlate/oskar_evaluate_cross_power_cuda.h
+include/oskar/correlate/oskar_evaluate_cross_power_omp.h
+include/oskar/imager/oskar_grid_correction.h
+include/oskar/imager/oskar_grid_functions_pillbox.h
+include/oskar/imager/oskar_grid_functions_spheroidal.h
+include/oskar/imager/oskar_grid_simple.h
+include/oskar/imager/oskar_grid_weights.h
+include/oskar/imager/oskar_grid_wproj.h
+include/oskar/imager/oskar_imager.h
+include/oskar/imager/oskar_imager_accessors.h
+include/oskar/imager/oskar_imager_check_init.h
+include/oskar/imager/oskar_imager_create.h
+include/oskar/imager/oskar_imager_finalise.h
+include/oskar/imager/oskar_imager_free.h
+include/oskar/imager/oskar_imager_linear_to_stokes.h
+include/oskar/imager/oskar_imager_reset_cache.h
+include/oskar/imager/oskar_imager_rotate_coords.h
+include/oskar/imager/oskar_imager_rotate_vis.h
+include/oskar/imager/oskar_imager_run.h
+include/oskar/imager/oskar_imager_update.h
+include/oskar/interferometer/oskar_WorkJonesZ.h
+include/oskar/interferometer/oskar_evaluate_jones_E.h
+include/oskar/interferometer/oskar_evaluate_jones_K.h
+include/oskar/interferometer/oskar_evaluate_jones_K_cuda.h
+include/oskar/interferometer/oskar_evaluate_jones_R.h
+include/oskar/interferometer/oskar_evaluate_jones_R_cuda.h
+include/oskar/interferometer/oskar_evaluate_jones_Z.h
+include/oskar/interferometer/oskar_interferometer.h
+include/oskar/interferometer/oskar_jones.h
+include/oskar/interferometer/oskar_jones_accessors.h
+include/oskar/interferometer/oskar_jones_create.h
+include/oskar/interferometer/oskar_jones_create_copy.h
+include/oskar/interferometer/oskar_jones_free.h
+include/oskar/interferometer/oskar_jones_get_station_pointer.h
+include/oskar/interferometer/oskar_jones_join.h
+include/oskar/interferometer/oskar_jones_set_real_scalar.h
+include/oskar/interferometer/oskar_jones_set_size.h
+include/oskar/log/oskar_log.h
+include/oskar/log/oskar_log_accessors.h
+include/oskar/log/oskar_log_create.h
+include/oskar/log/oskar_log_error.h
+include/oskar/log/oskar_log_file_data.h
+include/oskar/log/oskar_log_file_exists.h
+include/oskar/log/oskar_log_free.h
+include/oskar/log/oskar_log_line.h
+include/oskar/log/oskar_log_message.h
+include/oskar/log/oskar_log_section.h
+include/oskar/log/oskar_log_system_clock_data.h
+include/oskar/log/oskar_log_system_clock_string.h
+include/oskar/log/oskar_log_value.h
+include/oskar/log/oskar_log_warning.h
+include/oskar/log/oskar_log_write.h
+include/oskar/math/CMakeLists.txt
+include/oskar/math/oskar_add_inline.h
+include/oskar/math/oskar_angular_distance.h
+include/oskar/math/oskar_bearing_angle.h
+include/oskar/math/oskar_cmath.h
+include/oskar/math/oskar_dft_c2r.h
+include/oskar/math/oskar_dft_c2r_2d_cuda.h
+include/oskar/math/oskar_dft_c2r_2d_omp.h
+include/oskar/math/oskar_dft_c2r_3d_cuda.h
+include/oskar/math/oskar_dft_c2r_3d_omp.h
+include/oskar/math/oskar_dftw.h
+include/oskar/math/oskar_dftw_c2c_2d_cuda.h
+include/oskar/math/oskar_dftw_c2c_2d_omp.h
+include/oskar/math/oskar_dftw_c2c_3d_cuda.h
+include/oskar/math/oskar_dftw_c2c_3d_omp.h
+include/oskar/math/oskar_dftw_m2m_2d_cuda.h
+include/oskar/math/oskar_dftw_m2m_2d_omp.h
+include/oskar/math/oskar_dftw_m2m_3d_cuda.h
+include/oskar/math/oskar_dftw_m2m_3d_indexed_input_cuda.h
+include/oskar/math/oskar_dftw_m2m_3d_omp.h
+include/oskar/math/oskar_dftw_o2c_2d_cuda.h
+include/oskar/math/oskar_dftw_o2c_2d_omp.h
+include/oskar/math/oskar_dftw_o2c_3d_cuda.h
+include/oskar/math/oskar_dftw_o2c_3d_omp.h
+include/oskar/math/oskar_ellipse_radius.h
+include/oskar/math/oskar_evaluate_image_lm_grid.h
+include/oskar/math/oskar_evaluate_image_lmn_grid.h
+include/oskar/math/oskar_evaluate_image_lon_lat_grid.h
+include/oskar/math/oskar_fftpack_cfft.h
+include/oskar/math/oskar_fftpack_cfft_f.h
+include/oskar/math/oskar_fftphase.h
+include/oskar/math/oskar_find_closest_match.h
+include/oskar/math/oskar_fit_ellipse.h
+include/oskar/math/oskar_floating_point_compare.h
+include/oskar/math/oskar_gaussian_circular.h
+include/oskar/math/oskar_gaussian_circular_cuda.h
+include/oskar/math/oskar_healpix_npix_to_nside.h
+include/oskar/math/oskar_kahan_sum.h
+include/oskar/math/oskar_lapack_subset.h
+include/oskar/math/oskar_linspace.h
+include/oskar/math/oskar_matrix_multiply.h
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